Rmu_sc0003787.1_g000014

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003787.1
OG0000039
Physical Location & Seq
Reverse (-)
64529 .. 68756
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003787.1_g000014.1.cds

Sequence Viewer

Length: 2607 bp
atggccgtggtgagggactttgttctagacaaagcattcgaagccgtgtatgttggcgttcaagacctgatcgtcaagaatttcatttttaagtctctcttcaacgacgtcaaatccaggctcgaccattgggcaccactaatcaataaccagaaaatggatcgcccagagaaggaactggaagctttaaaggaagttatggagaagggccaagagctcgtcaacaagtgctcaacgattacgcgatggagccccttcaaaaagtacaagtacgccaggaaacttctccaatggcaggaatctctcaaaagcccgttggagacactgaaaatgcaagaagcgctgcgtgtaatgaagatcgataagctggttgatgatattcatcacatgatgctgaaacaacaacccgcagaaagttcaagtagtacacggctcgaacttccaccacttccacggcttatagttggactggatggtcctttgaatgatttgaaggaaaagcttcttgcgagtggcggacggcttcttggaggttccagctccggtcggtggtttgagagcgtagggtttgggcaatgggtcttgggccctgcctttgcattgggcctaatagttcaattcacctatgttctcactctcaatcgagtttgggcttcttgggggtggtctgtcttgctcttttgtcctgcatctgtccctagcatgttgctgtggatagtaaagcgttgcaacggatttccactagctattacagtggttggaagatcactttctgggcaacctatagaggtctggagaaaaagagtttctgaatggtctaaagattcttctattctagatgttgagacggaattgtttctctgtctccaaagcagcttagatgctttggataaaagactagcaattgtcaaagattgttacctggacctgggatcttttcctgaagacaaattaatccgagttgatgacctcattgatatgtgggcagagttatatgatatagatgatgacagtgtgtgctttgcaaatgtctatgaacttgccaataggaatctggctaatctggttgacagaaggtacagctatatgaagatggagggggaggatttctacgggcaacggtttgtcacccaacatgatttgcttagagagttagctatttacaatgctaagctagaaccggtagagcaaagaaaaagaatgaccatagaaataaggggaaacaaaatccccaagtggtggagagaacaaaaatgtcaccctatcaaggctcgcttgttatctattactacaactactgacttcgatatggaatggcccaacttgcaactaccagaagcagaagtttttgtcttgcattttcagagcccaagcaggtacagcttgcccgcgtttgtacagaaaatggataaattgaaggtactggtaatagacggcggtgacgaattaataaattttgaactactcggtttgttaccaaatctaaagagaatcagtttaattcgtctccgaattggtttcttgacccacaagcccatacaactgaaaagtctaaagaagatatctttcacgtcatgtgacacgaggggtatcggcgaaggagttttcagaatgtcggatgcatttccgaatttggaggaattaaacattcagttcgattatatggataaagaatttcttgcggagtgctgcaatctgattcatttaaagaagattagtatcgtcagccgtactgggctacgtgacttgcccgaagaaatcggaaatttggtcaacttagaagtactgaggctaaggtcttgtacagacttcgatatggaatggcccaacttgcaactaccagaagcagaagtttttgtcttgcattttcagagcccaagtaggtacagcttgcccgcgtttgtacagaaaatggataaattgaaggtactggtaatagacggcgatgacgaattaataaattttgaactactcggtttgttaccaaatctaaagagaatcagtttaattcgtctccgaattggtttcttaacccacaagcccatacaactgaaaagtctaaagaagatatctttcacgtcatgtgacacgaggggtatcggcgaaggagttttcagaatgtcggatgcatttccgaatttggaggaattaaacattcagttcgattatatggataaagaatttcttgcggagtgctgcaatctgattcatttaaagaagattagtatcgtcagccgtattgggctacgtgacttgcccgaagaaatcggaaatttggtcaacttagaagtattgaggctaaggtctggtatttgtctttcaaagcttcccagttccatcagcaacctcaaaaagttaaacttccttgacatatctgaatgcgccagcattgagttgcctaaaaacattggtgaattgagcagtttaagaaaggtggacatgagggattgctacagagtgaaagagctgcctccatcagtttcggatcttcatcagttagaggaagtgatatgcaacgatgaagaccaaggcagtttatgggaaacctttctacccaccctcacaaacctacgcgtggtggtgattcgtcgaacccaaccaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

868

Amino Acids

99.84

Weight (kDa)

6.53

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 71, 474
AatII GACGTC 1 cut(s) 111
Acc36I ACCTGC 1 cut(s) 1365
AccB1I GGYRCC 1 cut(s) 133
AccB7I CCANNNNNTGG 2 cut(s) 157, 1239
AccII CGCG 4 cut(s) 244, 1391, 1898, 2574
AciI CCGC 7 cut(s) 408, 516, 1389, 1437, 1682, 1896, 2189
AclWI GGATC 3 cut(s) 168, 940, 2493
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 9 cut(s) 79, 1453, 1630, 1673, 1765, 1960, 2137, 2180, 2272
AcuI CTGAAG 1 cut(s) 963
AcyI GRCGYC 1 cut(s) 108
AfeI AGCGCT 1 cut(s) 342
AfiI CCNNNNNNNGG 9 cut(s) 12, 157, 172, 295, 549, 928, 1239, 1267, 2575
AflIII ACRYGT 1 cut(s) 2572
AgeI ACCGGT 1 cut(s) 1180
AjiI CACGTC 2 cut(s) 1572, 2079
AjnI CCWGG 4 cut(s) 116, 275, 921, 927
Alw21I GWGCWC 2 cut(s) 219, 233
Alw26I GTCTC 6 cut(s) 99, 314, 839, 869, 1511, 2018
AlwI GGATC 3 cut(s) 168, 940, 2493
Aor51HI AGCGCT 1 cut(s) 342
AoxI GGCC 6 cut(s) 3, 208, 586, 604, 1316, 1823
ApaI GGGCCC 1 cut(s) 590
ApeKI GCWGC 5 cut(s) 343, 873, 1689, 2196, 2467
ApoI RAATTY 9 cut(s) 79, 1453, 1630, 1673, 1765, 1960, 2137, 2180, 2272
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AseI ATTAAT 3 cut(s) 953, 1448, 1955
AsiGI ACCGGT 1 cut(s) 1180
Asp700I GAANNNNTTC 3 cut(s) 501, 855, 2547
AspLEI GCGC 2 cut(s) 343, 2384
AspS9I GGNCC 8 cut(s) 208, 476, 586, 587, 604, 925, 1317, 1824
AsuHPI GGTGA 7 cut(s) 22, 613, 1120, 1250, 1451, 2423, 2593
AsuII TTCGAA 1 cut(s) 39
AvaII GGWCC 2 cut(s) 476, 925
BaeGI GKGCMC 2 cut(s) 136, 590
BanI GGYRCC 1 cut(s) 133
BanII GRGCYC 5 cut(s) 219, 254, 590, 1370, 1877
BauI CACGAG 2 cut(s) 1582, 2089
BbsI GAAGAC 2 cut(s) 951, 2529
Bbv12I GWGCWC 2 cut(s) 219, 233
BbvI GCAGC 5 cut(s) 330, 885, 1676, 2183, 2454
BccI CCATC 5 cut(s) 240, 467, 1087, 2345, 2482
BceAI ACGGC 8 cut(s) 29, 446, 470, 536, 1450, 1713, 1957, 2220
BciT130I CCWGG 4 cut(s) 118, 277, 923, 929
BcoDI GTCTC 6 cut(s) 99, 314, 839, 869, 1511, 2018
BfaI CTAG 6 cut(s) 26, 699, 743, 836, 899, 1175
BfmI CTRYAG 2 cut(s) 783, 2452
BfoI RGCGCY 1 cut(s) 344
BfuAI ACCTGC 1 cut(s) 1365
BisI GCNGC 5 cut(s) 344, 874, 1690, 2197, 2468
BlpI GCTNAGC 1 cut(s) 1170
BlsI GCNGC 5 cut(s) 345, 875, 1691, 2198, 2469
BmcAI AGTACT 1 cut(s) 1785
Bme1390I CCNGG 4 cut(s) 118, 277, 923, 929
Bme18I GGWCC 2 cut(s) 476, 925
BmgBI CACGTC 2 cut(s) 1572, 2079
BmgT120I GGNCC 8 cut(s) 208, 476, 586, 587, 604, 925, 1317, 1824
BmiI GGNNCC 4 cut(s) 135, 251, 535, 588
BmrFI CCNGG 4 cut(s) 118, 277, 923, 929
BmrI ACTGGG 2 cut(s) 1743, 2325
BmsI GCATC 5 cut(s) 381, 698, 871, 1609, 2116
BmuI ACTGGG 2 cut(s) 1743, 2325
BpiI GAAGAC 2 cut(s) 951, 2529
BpmI CTGGAG 1 cut(s) 814
Bpu10I CCTNAGC 2 cut(s) 1793, 2300
Bpu1102I GCTNAGC 1 cut(s) 1170
Bpu14I TTCGAA 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 360
BsaAI YACGTR 2 cut(s) 1742, 2249
BsaBI GATNNNNATC 4 cut(s) 381, 1718, 2225, 2490
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 4 cut(s) 6, 452, 928, 2527
BsaWI WCCGGW 2 cut(s) 542, 1180
Bsc4I CCNNNNNNNGG 9 cut(s) 12, 157, 172, 295, 549, 928, 1239, 1267, 2575
Bse118I RCCGGY 1 cut(s) 1180
Bse1I ACTGG 6 cut(s) 183, 474, 1428, 1738, 1935, 2331
Bse3DI GCAATG 1 cut(s) 581
Bse8I GATNNNNATC 4 cut(s) 381, 1718, 2225, 2490
BseBI CCWGG 4 cut(s) 118, 277, 923, 929
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 4 cut(s) 6, 452, 928, 2527
BseGI GGATG 3 cut(s) 478, 1624, 2131
BseJI GATNNNNATC 4 cut(s) 381, 1718, 2225, 2490
BseLI CCNNNNNNNGG 9 cut(s) 12, 157, 172, 295, 549, 928, 1239, 1267, 2575
BseMI GCAATG 1 cut(s) 581
BseMII CTCAG 1 cut(s) 1778
BseNI ACTGG 6 cut(s) 183, 474, 1428, 1738, 1935, 2331
BseSI GKGCMC 2 cut(s) 136, 590
BseXI GCAGC 5 cut(s) 330, 885, 1676, 2183, 2454
Bsh1236I CGCG 4 cut(s) 244, 1391, 1898, 2574
Bsh1285I CGRYCG 1 cut(s) 547
BshFI GGCC 6 cut(s) 5, 210, 588, 606, 1318, 1825
BshNI GGYRCC 1 cut(s) 133
BshTI ACCGGT 1 cut(s) 1180
BshVI ATCGAT 1 cut(s) 360
BsiEI CGRYCG 1 cut(s) 547
BsiHKAI GWGCWC 2 cut(s) 219, 233
BsiSI CCGG 2 cut(s) 543, 1181
BslFI GGGAC 2 cut(s) 29, 680
BslI CCNNNNNNNGG 9 cut(s) 12, 157, 172, 295, 549, 928, 1239, 1267, 2575
BsmAI GTCTC 6 cut(s) 99, 314, 839, 869, 1511, 2018
BsmBI CGTCTC 3 cut(s) 839, 1511, 2018
BsmFI GGGAC 2 cut(s) 29, 680
BsmI GAATGC 2 cut(s) 35, 2384
BsnI GGCC 6 cut(s) 5, 210, 588, 606, 1318, 1825
Bsp119I TTCGAA 1 cut(s) 39
Bsp120I GGGCCC 1 cut(s) 586
Bsp1286I GDGCHC 7 cut(s) 136, 219, 233, 254, 590, 1370, 1877
Bsp1407I TGTACA 3 cut(s) 1396, 1802, 1903
Bsp143I GATC 6 cut(s) 69, 160, 357, 764, 932, 2485
Bsp1720I GCTNAGC 1 cut(s) 1170
BspACI CCGC 7 cut(s) 408, 516, 1389, 1437, 1682, 1896, 2189
BspANI GGCC 6 cut(s) 5, 210, 588, 606, 1318, 1825
BspCNI CTCAG 1 cut(s) 1779
BspDI ATCGAT 1 cut(s) 360
BspFNI CGCG 4 cut(s) 244, 1391, 1898, 2574
BspLI GGNNCC 4 cut(s) 135, 251, 535, 588
BspMI ACCTGC 1 cut(s) 1365
BspPI GGATC 3 cut(s) 168, 940, 2493
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 581
BsrFI RCCGGY 1 cut(s) 1180
BsrGI TGTACA 3 cut(s) 1396, 1802, 1903
BsrI ACTGG 6 cut(s) 183, 474, 1428, 1738, 1935, 2331
BssAI RCCGGY 1 cut(s) 1180
BssECI CCNNGG 4 cut(s) 6, 452, 928, 2527
BssMI GATC 6 cut(s) 69, 160, 357, 764, 932, 2485
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 2 cut(s) 1582, 2089
BssT1I CCWWGG 1 cut(s) 2527
Bst2BI CACGAG 2 cut(s) 1582, 2089
Bst2UI CCWGG 4 cut(s) 118, 277, 923, 929
Bst4CI ACNGT 3 cut(s) 754, 1013, 1122
Bst6I CTCTTC 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 108
BstAUI TGTACA 3 cut(s) 1396, 1802, 1903
BstBAI YACGTR 2 cut(s) 1742, 2249
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 6 cut(s) 1273, 1385, 1389, 1892, 1896, 2386
BstDEI CTNAG 8 cut(s) 877, 1145, 1170, 1777, 1787, 1793, 2284, 2300
BstDSI CCRYGG 2 cut(s) 6, 452
BstF5I GGATG 3 cut(s) 478, 1624, 2131
BstFNI CGCG 4 cut(s) 244, 1391, 1898, 2574
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 2 cut(s) 343, 2384
BstKTI GATC 6 cut(s) 72, 163, 360, 767, 935, 2488
BstMAI GTCTC 6 cut(s) 99, 314, 839, 869, 1511, 2018
BstMBI GATC 6 cut(s) 69, 160, 357, 764, 932, 2485
BstMCI CGRYCG 1 cut(s) 547
BstMWI GCNNNNNNNGC 5 cut(s) 41, 340, 1324, 1380, 1831
BstNI CCWGG 4 cut(s) 118, 277, 923, 929
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 4 cut(s) 116, 275, 921, 927
BstSFI CTRYAG 2 cut(s) 783, 2452
BstSLI GKGCMC 2 cut(s) 136, 590
BstUI CGCG 4 cut(s) 244, 1391, 1898, 2574
BstV1I GCAGC 5 cut(s) 330, 885, 1676, 2183, 2454
BstV2I GAAGAC 2 cut(s) 951, 2529
BstX2I RGATCY 2 cut(s) 932, 2485
BstYI RGATCY 2 cut(s) 932, 2485
Bsu15I ATCGAT 1 cut(s) 360
BsuRI GGCC 6 cut(s) 5, 210, 588, 606, 1318, 1825
BsuTUI ATCGAT 1 cut(s) 360
BtgI CCRYGG 2 cut(s) 6, 452
BtgZI GCGATG 2 cut(s) 259, 1959
BtrI CACGTC 2 cut(s) 1572, 2079
BtsCI GGATG 3 cut(s) 478, 1624, 2131
BtsIMutI CAGTG 3 cut(s) 323, 759, 1018
BveI ACCTGC 1 cut(s) 1365
Cac8I GCNNGC 6 cut(s) 1273, 1385, 1389, 1892, 1896, 2386
CfoI GCGC 2 cut(s) 343, 2384
Cfr10I RCCGGY 1 cut(s) 1180
Cfr13I GGNCC 8 cut(s) 208, 476, 586, 587, 604, 925, 1317, 1824
ClaI ATCGAT 1 cut(s) 360
CspAI ACCGGT 1 cut(s) 1180
CviAII CATG 6 cut(s) 388, 703, 1136, 1575, 2082, 2440
DdeI CTNAG 8 cut(s) 877, 1145, 1170, 1777, 1787, 1793, 2284, 2300
DpnI GATC 6 cut(s) 71, 162, 359, 766, 934, 2487
DpnII GATC 6 cut(s) 69, 160, 357, 764, 932, 2485
DraI TTTAAA 3 cut(s) 189, 1707, 2214
DrdI GACNNNNNNGTC 2 cut(s) 71, 474
DseDI GACNNNNNNGTC 2 cut(s) 71, 474
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EciI GGCGGA 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 2527
Eco24I GRGCYC 5 cut(s) 219, 254, 590, 1370, 1877
Eco32I GATATC 2 cut(s) 1563, 2070
Eco47I GGWCC 2 cut(s) 476, 925
Eco47III AGCGCT 1 cut(s) 342
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 963
EcoICRI GAGCTC 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 587
EcoRII CCWGG 4 cut(s) 116, 275, 921, 927
EcoRV GATATC 2 cut(s) 1563, 2070
EcoT14I CCWWGG 1 cut(s) 2527
EcoT22I ATGCAT 2 cut(s) 1624, 2131
EcoT38I GRGCYC 5 cut(s) 219, 254, 590, 1370, 1877
ErhI CCWWGG 1 cut(s) 2527
Esp3I CGTCTC 3 cut(s) 839, 1511, 2018
FaeI CATG 6 cut(s) 391, 706, 1139, 1578, 2085, 2443
FaqI GGGAC 2 cut(s) 29, 680
FatI CATG 6 cut(s) 387, 702, 1135, 1574, 2081, 2439
FauI CCCGC 3 cut(s) 415, 1396, 1903
Fnu4HI GCNGC 5 cut(s) 344, 874, 1690, 2197, 2468
FokI GGATG 3 cut(s) 485, 1631, 2138
FriOI GRGCYC 5 cut(s) 219, 254, 590, 1370, 1877
Fsp4HI GCNGC 5 cut(s) 344, 874, 1690, 2197, 2468
FspBI CTAG 6 cut(s) 26, 699, 743, 836, 899, 1175
GlaI GCGC 2 cut(s) 342, 2383
GluI GCNGC 5 cut(s) 344, 874, 1690, 2197, 2468
GsuI CTGGAG 1 cut(s) 814
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 6 cut(s) 5, 210, 588, 606, 1318, 1825
HapII CCGG 2 cut(s) 543, 1181
HhaI GCGC 2 cut(s) 343, 2384
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 6 cut(s) 391, 706, 1139, 1578, 2085, 2443
Hin6I GCGC 2 cut(s) 341, 2382
HinP1I GCGC 2 cut(s) 341, 2382
HincII GTYRAC 4 cut(s) 223, 1069, 1774, 2281
HindII GTYRAC 4 cut(s) 223, 1069, 1774, 2281
HindIII AAGCTT 3 cut(s) 183, 500, 2324
HinfI GANTC 8 cut(s) 299, 824, 1051, 1491, 1699, 1998, 2206, 2584
HpaII CCGG 2 cut(s) 543, 1181
HphI GGTGA 7 cut(s) 22, 613, 1120, 1250, 1451, 2423, 2593
Hpy166II GTNNAC 6 cut(s) 223, 428, 1069, 1774, 2281, 2437
Hpy188III TCNNGA 7 cut(s) 26, 62, 76, 793, 836, 941, 1522
Hpy8I GTNNAC 6 cut(s) 223, 428, 1069, 1774, 2281, 2437
Hpy99I CGWCG 2 cut(s) 110, 2592
HpyAV CCTTC 9 cut(s) 166, 199, 265, 487, 1068, 1411, 1592, 1918, 2099
HpyCH4III ACNGT 3 cut(s) 754, 1013, 1122
HpyCH4IV ACGT 5 cut(s) 108, 1571, 1741, 2078, 2248
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 340, 1324, 1380, 1831
HpyF3I CTNAG 8 cut(s) 877, 1145, 1170, 1777, 1787, 1793, 2284, 2300
HpySE526I ACGT 5 cut(s) 108, 1571, 1741, 2078, 2248
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 6 cut(s) 391, 706, 1139, 1578, 2085, 2443
HspAI GCGC 2 cut(s) 341, 2382
Kzo9I GATC 6 cut(s) 69, 160, 357, 764, 932, 2485
LmnI GCTCC 2 cut(s) 249, 545
Lsp1109I GCAGC 5 cut(s) 330, 885, 1676, 2183, 2454
LweI GCATC 5 cut(s) 381, 698, 871, 1609, 2116
MaeI CTAG 6 cut(s) 26, 699, 743, 836, 899, 1175
MaeII ACGT 5 cut(s) 108, 1571, 1741, 2078, 2248
MalI GATC 6 cut(s) 71, 162, 359, 766, 934, 2487
MboI GATC 6 cut(s) 69, 160, 357, 764, 932, 2485
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 2 cut(s) 932, 2485
MhlI GDGCHC 7 cut(s) 136, 219, 233, 254, 590, 1370, 1877
MluI ACGCGT 1 cut(s) 2572
MmeI TCCRAC 5 cut(s) 297, 445, 739, 1596, 2103
Mph1103I ATGCAT 2 cut(s) 1624, 2131
MroXI GAANNNNTTC 3 cut(s) 501, 855, 2547
MslI CAYNNNNRTG 1 cut(s) 977
MspI CCGG 2 cut(s) 543, 1181
MspR9I CCNGG 4 cut(s) 118, 277, 923, 929
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 2 cut(s) 35, 2384
MvaI CCWGG 4 cut(s) 118, 277, 923, 929
MvnI CGCG 4 cut(s) 244, 1391, 1898, 2574
MwoI GCNNNNNNNGC 5 cut(s) 41, 340, 1324, 1380, 1831
NdeII GATC 6 cut(s) 69, 160, 357, 764, 932, 2485
NlaIII CATG 6 cut(s) 391, 706, 1139, 1578, 2085, 2443
NlaIV GGNNCC 4 cut(s) 135, 251, 535, 588
NmuCI GTSAC 7 cut(s) 1126, 1256, 1439, 1577, 1742, 2084, 2249
NsiI ATGCAT 2 cut(s) 1624, 2131
NspI RCATGY 1 cut(s) 706
NspV TTCGAA 1 cut(s) 39
PcsI WCGNNNNNNNCGW 2 cut(s) 1440, 1947
PctI GAATGC 2 cut(s) 35, 2384
PdmI GAANNNNTTC 3 cut(s) 501, 855, 2547
PfeI GAWTC 8 cut(s) 299, 824, 1051, 1491, 1699, 1998, 2206, 2584
PflMI CCANNNNNTGG 2 cut(s) 157, 1239
PinAI ACCGGT 1 cut(s) 1180
PkrI GCNGC 5 cut(s) 345, 875, 1691, 2198, 2469
Ppu21I YACGTR 2 cut(s) 1742, 2249
PshBI ATTAAT 3 cut(s) 953, 1448, 1955
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 4 cut(s) 116, 275, 921, 927
PspGI CCWGG 4 cut(s) 116, 275, 921, 927
PspN4I GGNNCC 4 cut(s) 135, 251, 535, 588
PspOMI GGGCCC 1 cut(s) 586
PspPI GGNCC 8 cut(s) 208, 476, 586, 587, 604, 925, 1317, 1824
PsuI RGATCY 2 cut(s) 932, 2485
RseI CAYNNNNRTG 1 cut(s) 977
SacI GAGCTC 1 cut(s) 219
SatI GCNGC 5 cut(s) 344, 874, 1690, 2197, 2468
Sau3AI GATC 6 cut(s) 69, 160, 357, 764, 932, 2485
Sau96I GGNCC 8 cut(s) 208, 476, 586, 587, 604, 925, 1317, 1824
ScaI AGTACT 1 cut(s) 1785
ScrFI CCNGG 4 cut(s) 118, 277, 923, 929
SduI GDGCHC 7 cut(s) 136, 219, 233, 254, 590, 1370, 1877
SfaNI GCATC 5 cut(s) 381, 698, 871, 1609, 2116
SfcI CTRYAG 2 cut(s) 783, 2452
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 2 cut(s) 476, 925
SmiMI CAYNNNNRTG 1 cut(s) 977
SsiI CCGC 7 cut(s) 408, 516, 1389, 1437, 1682, 1896, 2189
SspMI CTAG 6 cut(s) 26, 699, 743, 836, 899, 1175
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 4 cut(s) 116, 275, 921, 927
StyI CCWWGG 1 cut(s) 2527
TaaI ACNGT 3 cut(s) 754, 1013, 1122
TaiI ACGT 5 cut(s) 111, 1574, 1744, 2081, 2251
TatI WGTACW 6 cut(s) 264, 425, 1396, 1783, 1802, 1903
TfiI GAWTC 8 cut(s) 299, 824, 1051, 1491, 1699, 1998, 2206, 2584
TscAI CASTG 3 cut(s) 330, 759, 1018
TseFI GTSAC 7 cut(s) 1126, 1256, 1439, 1577, 1742, 2084, 2249
TseI GCWGC 5 cut(s) 343, 873, 1689, 2196, 2467
Tsp45I GTSAC 7 cut(s) 1126, 1256, 1439, 1577, 1742, 2084, 2249
TspDTI ATGAA 9 cut(s) 73, 368, 371, 1050, 1103, 1691, 2198, 2480, 2535
TspGWI ACGGA 2 cut(s) 747, 863
TspRI CASTG 3 cut(s) 330, 759, 1018
Van91I CCANNNNNTGG 2 cut(s) 157, 1239
VpaK11BI GGWCC 2 cut(s) 476, 925
VspI ATTAAT 3 cut(s) 953, 1448, 1955
XapI RAATTY 9 cut(s) 79, 1453, 1630, 1673, 1765, 1960, 2137, 2180, 2272
XbaI TCTAGA 2 cut(s) 25, 835
XceI RCATGY 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 1051
XmnI GAANNNNTTC 3 cut(s) 501, 855, 2547
XspI CTAG 6 cut(s) 26, 699, 743, 836, 899, 1175
ZraI GACGTC 1 cut(s) 109
ZrmI AGTACT 1 cut(s) 1785
Zsp2I ATGCAT 2 cut(s) 1624, 2131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.