FvH4_1g15210

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000039
Physical Location & Seq
Forward (+)
8630280 .. 8634578
4299 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15210.t3

Sequence Viewer

Length: 2568 bp
ATGGCCAATCCAGTAGATGTTTTCGCCGGGGCTGGTGGAGGATTACTGTTCAGTGTGCTCTATGAAGCCCTCAAGGAGCTGACCATCAAGTATTTGCTGTTCAAGCATGTCCTCAAAAGCGTCAAATCCACACTCAAATCCCTGGAGAACGTGACTCAAGAGATTGCAAAACTCAACGATGATCTGGATCGGCCGAAGGAAGAAATGGCTGGCCTGAAAACCCAACTCGACGAGGGCAAAGTGCTCGTTGACAAGTGCCGCAAGGTTCGTGCGTGGAGGGTGGACAAGACGTACAAGTACTCCAGGAAACTTATTGGCTGGAATGACAGTCTTAAAGAACAGTATGAGATACTCAACGTTTTTGCACTGAGAAATGGGTTGGAGACCTTGAAAACGGTGAAGGGAACAGAGAAGACAGTTAACCAAATCGAATCGAGCAATGTCACTATAAAGGAGGGAGTGGAGGATCTTCAGATCAACAATGAAGATTTAAAGATTGCGGTGAACCGGGTGGAAGCGATTACTTTGAATATAGAGGCTGCGATGAAGCAGCCACAAAAGGAAGCTGAAATTGAAGCTTGGGGTGAAGTACCTGACCTTCCAACTCTTACAGTTGGATTGGATGGGCCTCTGAATGAACTGAAGATGATGATGTTCAACGATGAAGTGTCAATGGTTGTGCTGACCGCTCCTGGAGGGTGTGGAAAAACCACTTTGGCAACGAAGTTCTGTCGAGACAAGAAAGTCCAAGAGAAATTCAAGAACAATATCTTCTTTGTCACTGTTTCCAAAACGCCAAACTTCTGCCTTATTGTACAAGAGCTATACAAAAGCAAGGGTAACCTGCAGGTACCTACTTTTAAAGACGACGAAAATGCAGTAAAGTGGCTGCAGACGTTTGTGAAGGAACAAGGACAAGACCCTTTACTAGTAGTCCTGGATGATGTTTGGTCTGGATCAGAATACTTACTTCACAAGTTCGACTTCAAAATGCCTAATTACAAGGTTTTAGTGACATCAAGATCTGAATTTCCAGGATGTGGCTCTCCATATCATTTGCAGTCATTGGATTTTGACAATGCAATGACACTCTTTCATCATGAAGCATCCTTGGGAGAAAAGACTTTGGATATTCCACAAGATATTATAAGAAAGGTAGTAGAGGGCTGCAAGGGATTTCCACTTGCTATAACAGTGGCCGCAAAATCACTTTGCGGACGGCCTATAGAGGATTGGGAGAAAAGACTTGTTGAATGGTCCAAAGGTTCTTCGATTCTCGATTCCGAGATTCAATTGCTTCTTCGCCTCCAAACCAGTTTAGATGTCTCGAACAAGGAAATGATTATGGTCAGAGAATGTTTCTTAGACCTAGGGTCATTTCCAGAAGATAAAAGAATTCCTGTTGCTGCCCTCATTGATATCTGGACGGAGTCTTATGATTCACTGGATGAAGACATTTTATGTGTTGCAAACCTCCACCAGATCACCAACCGAAGTCTGGCTACTCTTGTAGTCACAAGAAAGGACAAGCTGCAGGGGGATGGATACTACACTGAGCATTTTGTTACCCAGCATGATCTGCTTCGAGAGCTGGCTATCTATGAGTCAACACTAGAGGACACCGAACAGAGAGAAAGACTGATCATAAACATATCCAAAGACAATTTTCCCAAGTGGTGGAGGGAACAGAAGTATCAATGCATGAAGGCTCGCCTGTTATCTATCTCAACTGATGGAGCATTTTCAACAAACTGGCCTGACATGGAACTACCAGAAGCTGAGGTTCTAGTCTTGAATTTTCAGACCAAGAACTATGCATTACCCCCATTTGTGGAGAAAATGGTGAAGTTGAAAGTATTGATACTCACAAGTTATGGTATTGTACCTTCAGAAGTAACAAACTTCCAGTTACTCTGTACTTCATCAAATCTGAAGAGAATGAGATTAGAACGCATCTCAATTCCATCCATAGCCAAGCACCCCATTCAATTCAGTAGTCTACAGAAGATTTCTTTGTTCATGTGTAATATCGGTCAAGCTTTCAGCGACGGATCAATCCAACTTTCACATGCATGGCCAAATCTAGTGGAAATGAACATTGACTATTGCAATGACTTGGTGGCATTGCCTGCTGACACCAGTGACTTAATTCTTCTAAAGAAGCTCAGCATCACCAACAATCATAAGCTAATTGCCTTGCCTGAAGATATTGGAAAGCTGGCCAAATTGGAACTATTGAGGCTAAGGTCTTGTTCAGGCTTAGAGGAATTGCCAGGTTCAACTGGGAACCTGAAAAAGCTAAACTTCCTTGATATATCTTACTGCTTCAGCATTAAGGAGTTGCCTGAAAATTTCGGAGAACTGAGCAGCTTAAGAAAGCTTAACATGAGAGACTGCTCAAGACTGACAGAGCTGCCTCTATCAGTTCCAAGTCTGGAGCATTTACAAGTGATAGGTGATGATGATACAAAAAGTTTATGGCAACCCTTCTTACCTATCAAAGGCACAAACATACAGTTGGCCAAAGATAATGTCAACCTAAACTGGCTCCACAAATATCAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

856

Amino Acids

97.08

Weight (kDa)

5.7

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 6 - 134 3.4e-23 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 211 - 369 6.9e-16 NB-ARC domain
LRR_14 PF23598 713 - 802 2.1e-10 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1148
AasI GACNNNNNNGTC 1 cut(s) 743
Acc36I ACCTGC 2 cut(s) 838, 852
Acc65I GGTACC 1 cut(s) 850
AccB1I GGYRCC 1 cut(s) 850
AccB7I CCANNNNNTGG 2 cut(s) 1040, 1677
AccBSI CCGCTC 1 cut(s) 689
AccI GTMKAC 1 cut(s) 1999
AciI CCGC 5 cut(s) 259, 500, 687, 1200, 1215
AclI AACGTT 1 cut(s) 357
AclWI GGATC 4 cut(s) 195, 474, 964, 2059
AcoI YGGCCR 6 cut(s) 3, 191, 1197, 2075, 2220, 2520
AcsI RAATTY 5 cut(s) 755, 1028, 1395, 1795, 2350
AcuI CTGAAG 6 cut(s) 455, 662, 1872, 1952, 2223, 2311
AfaI GTAC 7 cut(s) 293, 299, 591, 816, 852, 1884, 1918
AfiI CCNNNNNNNGG 5 cut(s) 1040, 1498, 1677, 1831, 2501
AflII CTTAAG 1 cut(s) 2371
AhdI GACNNNNNGTC 1 cut(s) 1372
AhlI ACTAGT 1 cut(s) 928
AjnI CCWGG 6 cut(s) 141, 302, 691, 936, 1033, 2272
Alw21I GWGCWC 2 cut(s) 60, 246
Alw26I GTCTC 4 cut(s) 377, 729, 1330, 2385
AlwI GGATC 4 cut(s) 195, 474, 964, 2059
AlwNI CAGNNNCTG 1 cut(s) 1778
ApeKI GCWGC 8 cut(s) 539, 550, 889, 1167, 1406, 1531, 2367, 2413
ApoI RAATTY 5 cut(s) 755, 1028, 1395, 1795, 2350
ArsI GACNNNNNNTTYG 2 cut(s) 2517, 2549
Asp718I GGTACC 1 cut(s) 850
AspA2I CCTAGG 1 cut(s) 1369
AspS9I GGNCC 2 cut(s) 626, 1257
AsuC2I CCSGG 2 cut(s) 28, 509
AsuHPI GGTGA 7 cut(s) 409, 514, 596, 1477, 1855, 2164, 2468
AvaII GGWCC 1 cut(s) 1257
AvrII CCTAGG 1 cut(s) 1369
BaeI ACNNNNGTAYC 2 cut(s) 1676, 1709
BalI TGGCCA 4 cut(s) 5, 2077, 2222, 2522
BanI GGYRCC 1 cut(s) 850
BarI GAAGNNNNNNTAC 6 cut(s) 582, 614, 1486, 1518, 1870, 1902
BbsI GAAGAC 2 cut(s) 419, 1458
Bbv12I GWGCWC 2 cut(s) 60, 246
BbvCI CCTCAGC 1 cut(s) 1779
BbvI GCAGC 8 cut(s) 526, 562, 876, 1154, 1393, 1518, 2379, 2400
BccI CCATC 5 cut(s) 92, 617, 1535, 1727, 1972
BceAI ACGGC 1 cut(s) 1235
BcgI CGANNNNNNTGC 4 cut(s) 226, 260, 857, 891
BciT130I CCWGG 6 cut(s) 143, 304, 693, 938, 1035, 2274
BciVI GTATCC 1 cut(s) 1538
BclI TGATCA 1 cut(s) 1641
BcnI CCSGG 2 cut(s) 28, 509
BcoDI GTCTC 4 cut(s) 377, 729, 1330, 2385
BcuI ACTAGT 1 cut(s) 928
BfaI CTAG 5 cut(s) 929, 1370, 1613, 1787, 2084
BfmI CTRYAG 5 cut(s) 845, 890, 1224, 1532, 2000
BfrI CTTAAG 1 cut(s) 2371
BfuAI ACCTGC 2 cut(s) 838, 852
BfuI GTATCC 1 cut(s) 1538
BglII AGATCT 1 cut(s) 1022
BlnI CCTAGG 1 cut(s) 1369
BlpI GCTNAGC 1 cut(s) 2165
BmcAI AGTACT 1 cut(s) 299
Bme1390I CCNGG 8 cut(s) 28, 143, 304, 509, 693, 938, 1035, 2274
Bme18I GGWCC 1 cut(s) 1257
BmeRI GACNNNNNGTC 1 cut(s) 1372
BmgT120I GGNCC 2 cut(s) 626, 1257
BmiI GGNNCC 3 cut(s) 852, 2288, 2549
BmrFI CCNGG 8 cut(s) 28, 143, 304, 509, 693, 938, 1035, 2274
BmrI ACTGGG 1 cut(s) 2292
BmsI GCATC 3 cut(s) 1115, 1962, 2178
BmuI ACTGGG 1 cut(s) 2292
BpiI GAAGAC 2 cut(s) 419, 1458
BpmI CTGGAG 4 cut(s) 164, 286, 714, 2456
Bpu10I CCTNAGC 2 cut(s) 1779, 2243
Bpu1102I GCTNAGC 1 cut(s) 2165
BpuEI CTTGAG 3 cut(s) 56, 141, 2383
BpuMI CCSGG 2 cut(s) 28, 509
BsaBI GATNNNNATC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 4 cut(s) 27, 141, 1110, 1369
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 5 cut(s) 1040, 1498, 1677, 1831, 2501
Bse1I ACTGG 8 cut(s) 11, 1314, 1449, 1757, 1906, 2139, 2287, 2549
Bse3DI GCAATG 4 cut(s) 445, 1089, 2116, 2123
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 6 cut(s) 143, 304, 693, 938, 1035, 2274
BseDI CCNNGG 4 cut(s) 27, 141, 1110, 1369
BseGI GGATG 7 cut(s) 628, 946, 1043, 1106, 1453, 1546, 1964
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 5 cut(s) 1040, 1498, 1677, 1831, 2501
BseMI GCAATG 4 cut(s) 445, 1089, 2116, 2123
BseMII CTCAG 5 cut(s) 359, 1545, 1770, 2179, 2354
BseNI ACTGG 8 cut(s) 11, 1314, 1449, 1757, 1906, 2139, 2287, 2549
BseX3I CGGCCG 1 cut(s) 191
BseXI GCAGC 8 cut(s) 526, 562, 876, 1154, 1393, 1518, 2379, 2400
BseYI CCCAGC 1 cut(s) 1569
Bsh1285I CGRYCG 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 850
BsiEI CGRYCG 1 cut(s) 194
BsiHKAI GWGCWC 2 cut(s) 60, 246
BsiSI CCGG 2 cut(s) 27, 508
BslI CCNNNNNNNGG 5 cut(s) 1040, 1498, 1677, 1831, 2501
BsmAI GTCTC 4 cut(s) 377, 729, 1330, 2385
Bso31I GGTCTC 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 60, 246
Bsp1407I TGTACA 1 cut(s) 814
Bsp1720I GCTNAGC 1 cut(s) 2165
BspACI CCGC 5 cut(s) 259, 500, 687, 1200, 1215
BspCNI CTCAG 5 cut(s) 360, 1546, 1771, 2178, 2355
BspHI TCATGA 1 cut(s) 1099
BspLI GGNNCC 3 cut(s) 852, 2288, 2549
BspMAI CTGCAG 3 cut(s) 849, 894, 1536
BspMI ACCTGC 2 cut(s) 838, 852
BspPI GGATC 4 cut(s) 195, 474, 964, 2059
BspT107I GGYRCC 1 cut(s) 850
BspTI CTTAAG 1 cut(s) 2371
BspTNI GGTCTC 1 cut(s) 377
BsrBI CCGCTC 1 cut(s) 689
BsrDI GCAATG 4 cut(s) 445, 1089, 2116, 2123
BsrGI TGTACA 1 cut(s) 814
BsrI ACTGG 8 cut(s) 11, 1314, 1449, 1757, 1906, 2139, 2287, 2549
BssECI CCNNGG 4 cut(s) 27, 141, 1110, 1369
BssT1I CCWWGG 2 cut(s) 1110, 1369
Bst2UI CCWGG 6 cut(s) 143, 304, 693, 938, 1035, 2274
Bst4CI ACNGT 9 cut(s) 48, 329, 342, 397, 418, 613, 784, 1195, 2517
Bst6I CTCTTC 1 cut(s) 1928
BstAFI CTTAAG 1 cut(s) 2371
BstAPI GCANNNNNTGC 2 cut(s) 1579, 2129
BstAUI TGTACA 1 cut(s) 814
BstC8I GCNNGC 5 cut(s) 211, 1593, 1711, 2130, 2220
BstDEI CTNAG 8 cut(s) 368, 1363, 1554, 1779, 2165, 2243, 2260, 2363
BstEII GGTNACC 1 cut(s) 839
BstENI CCTNNNNNAGG 1 cut(s) 2499
BstF5I GGATG 7 cut(s) 628, 946, 1043, 1106, 1453, 1546, 1964
BstMAI GTCTC 4 cut(s) 377, 729, 1330, 2385
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 4 cut(s) 103, 1579, 1588, 2129
BstNI CCWGG 6 cut(s) 143, 304, 693, 938, 1035, 2274
BstNSI RCATGY 2 cut(s) 110, 2072
BstPI GGTNACC 1 cut(s) 839
BstSCI CCNGG 8 cut(s) 26, 141, 302, 507, 691, 936, 1033, 2272
BstSFI CTRYAG 5 cut(s) 845, 890, 1224, 1532, 2000
BstV1I GCAGC 8 cut(s) 526, 562, 876, 1154, 1393, 1518, 2379, 2400
BstV2I GAAGAC 2 cut(s) 419, 1458
BstX2I RGATCY 2 cut(s) 466, 1022
BstYI RGATCY 2 cut(s) 466, 1022
BstZI CGGCCG 1 cut(s) 191
BsuI GTATCC 1 cut(s) 1538
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 7 cut(s) 628, 946, 1043, 1106, 1453, 1546, 1964
BtsIMutI CAGTG 7 cut(s) 58, 365, 780, 1200, 1442, 1551, 2146
BveI ACCTGC 2 cut(s) 838, 852
Cac8I GCNNGC 5 cut(s) 211, 1593, 1711, 2130, 2220
CaiI CAGNNNCTG 1 cut(s) 1778
CciI TCATGA 1 cut(s) 1099
Cfr13I GGNCC 2 cut(s) 626, 1257
CseI GACGC 1 cut(s) 109
Csp6I GTAC 7 cut(s) 292, 298, 590, 815, 851, 1883, 1917
CspCI CAANNNNNGTGG 2 cut(s) 2067, 2102
CviAII CATG 9 cut(s) 107, 1100, 1574, 1702, 1762, 2020, 2069, 2073, 2386
CviQI GTAC 7 cut(s) 292, 298, 590, 815, 851, 1883, 1917
DdeI CTNAG 8 cut(s) 368, 1363, 1554, 1779, 2165, 2243, 2260, 2363
DraI TTTAAA 2 cut(s) 492, 862
DrdI GACNNNNNNGTC 1 cut(s) 743
DriI GACNNNNNGTC 1 cut(s) 1372
DseDI GACNNNNNNGTC 1 cut(s) 743
EaeI YGGCCR 6 cut(s) 3, 191, 1197, 2075, 2220, 2520
EagI CGGCCG 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 1928
Eam1105I GACNNNNNGTC 1 cut(s) 1372
EarI CTCTTC 1 cut(s) 1928
EclXI CGGCCG 1 cut(s) 191
Eco130I CCWWGG 2 cut(s) 1110, 1369
Eco31I GGTCTC 1 cut(s) 377
Eco32I GATATC 1 cut(s) 1420
Eco47I GGWCC 1 cut(s) 1257
Eco52I CGGCCG 1 cut(s) 191
Eco57I CTGAAG 6 cut(s) 455, 662, 1872, 1952, 2223, 2311
Eco91I GGTNACC 1 cut(s) 839
EcoNI CCTNNNNNAGG 1 cut(s) 2499
EcoO65I GGTNACC 1 cut(s) 839
EcoRI GAATTC 1 cut(s) 1395
EcoRII CCWGG 6 cut(s) 141, 302, 691, 936, 1033, 2272
EcoRV GATATC 1 cut(s) 1420
EcoT14I CCWWGG 2 cut(s) 1110, 1369
EcoT22I ATGCAT 3 cut(s) 1703, 1819, 2074
ErhI CCWWGG 2 cut(s) 1110, 1369
FaeI CATG 9 cut(s) 110, 1103, 1577, 1705, 1765, 2023, 2072, 2076, 2389
FalI AAGNNNNNCTT 4 cut(s) 968, 1000, 2288, 2320
FatI CATG 9 cut(s) 106, 1099, 1573, 1701, 1761, 2019, 2068, 2072, 2385
FbaI TGATCA 1 cut(s) 1641
FblI GTMKAC 1 cut(s) 1999
FokI GGATG 7 cut(s) 635, 953, 1050, 1093, 1460, 1553, 1951
FspBI CTAG 5 cut(s) 929, 1370, 1613, 1787, 2084
GsaI CCCAGC 1 cut(s) 1573
GsuI CTGGAG 4 cut(s) 164, 286, 714, 2456
HapII CCGG 2 cut(s) 27, 508
HgaI GACGC 1 cut(s) 109
Hin1II CATG 9 cut(s) 110, 1103, 1577, 1705, 1765, 2023, 2072, 2076, 2389
HincII GTYRAC 4 cut(s) 250, 421, 1608, 2536
HindII GTYRAC 4 cut(s) 250, 421, 1608, 2536
HindIII AAGCTT 3 cut(s) 576, 2037, 2378
HinfI GANTC 8 cut(s) 154, 431, 1273, 1280, 1288, 1430, 1439, 1604
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 2 cut(s) 27, 508
HphI GGTGA 7 cut(s) 409, 514, 596, 1477, 1855, 2164, 2468
Hpy166II GTNNAC 7 cut(s) 250, 283, 421, 505, 1608, 2000, 2536
Hpy8I GTNNAC 7 cut(s) 250, 283, 421, 505, 1608, 2000, 2536
Hpy99I CGWCG 3 cut(s) 233, 872, 2051
HpyAV CCTTC 7 cut(s) 190, 394, 608, 898, 1699, 1896, 2497
HpyCH4III ACNGT 9 cut(s) 48, 329, 342, 397, 418, 613, 784, 1195, 2517
HpyCH4IV ACGT 4 cut(s) 150, 290, 357, 896
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 1579, 1588, 2129
HpyF3I CTNAG 8 cut(s) 368, 1363, 1554, 1779, 2165, 2243, 2260, 2363
HpySE526I ACGT 4 cut(s) 150, 290, 357, 896
Hsp92II CATG 9 cut(s) 110, 1103, 1577, 1705, 1765, 2023, 2072, 2076, 2389
KpnI GGTACC 1 cut(s) 854
Ksp22I TGATCA 1 cut(s) 1641
KspAI GTTAAC 1 cut(s) 421
LmnI GCTCC 5 cut(s) 76, 694, 1736, 2437, 2553
Lsp1109I GCAGC 8 cut(s) 526, 562, 876, 1154, 1393, 1518, 2379, 2400
LweI GCATC 3 cut(s) 1115, 1962, 2178
MaeI CTAG 5 cut(s) 929, 1370, 1613, 1787, 2084
MaeII ACGT 4 cut(s) 150, 290, 357, 896
MbiI CCGCTC 1 cut(s) 689
MfeI CAATTG 1 cut(s) 1292
MflI RGATCY 2 cut(s) 466, 1022
MhlI GDGCHC 2 cut(s) 60, 246
MlsI TGGCCA 4 cut(s) 5, 2077, 2222, 2522
MluNI TGGCCA 4 cut(s) 5, 2077, 2222, 2522
MlyI GAGTC 3 cut(s) 148, 1439, 1613
MmeI TCCRAC 4 cut(s) 360, 595, 626, 2083
Mox20I TGGCCA 4 cut(s) 5, 2077, 2222, 2522
Mph1103I ATGCAT 3 cut(s) 1703, 1819, 2074
MscI TGGCCA 4 cut(s) 5, 2077, 2222, 2522
MseI TTAA 8 cut(s) 333, 420, 491, 861, 2147, 2334, 2372, 2382
MslI CAYNNNNRTG 1 cut(s) 2071
Msp20I TGGCCA 4 cut(s) 5, 2077, 2222, 2522
MspCI CTTAAG 1 cut(s) 2371
MspI CCGG 2 cut(s) 27, 508
MspR9I CCNGG 8 cut(s) 28, 143, 304, 509, 693, 938, 1035, 2274
MunI CAATTG 1 cut(s) 1292
MvaI CCWGG 6 cut(s) 143, 304, 693, 938, 1035, 2274
MwoI GCNNNNNNNGC 4 cut(s) 103, 1579, 1588, 2129
NciI CCSGG 2 cut(s) 28, 509
NlaIII CATG 9 cut(s) 110, 1103, 1577, 1705, 1765, 2023, 2072, 2076, 2389
NlaIV GGNNCC 3 cut(s) 852, 2288, 2549
NmuCI GTSAC 6 cut(s) 151, 442, 778, 1012, 1513, 2141
NsiI ATGCAT 3 cut(s) 1703, 1819, 2074
NspI RCATGY 2 cut(s) 110, 2072
PagI TCATGA 1 cut(s) 1099
PfeI GAWTC 5 cut(s) 431, 1273, 1280, 1288, 1439
PflFI GACNNNGTC 1 cut(s) 1429
PflMI CCANNNNNTGG 2 cut(s) 1040, 1677
PfoI TCCNGGA 4 cut(s) 302, 691, 936, 1033
PleI GAGTC 3 cut(s) 148, 1438, 1612
PpsI GAGTC 3 cut(s) 148, 1438, 1612
PsiI TTATAA 1 cut(s) 1148
Psp1406I AACGTT 1 cut(s) 357
Psp6I CCWGG 6 cut(s) 141, 302, 691, 936, 1033, 2272
PspEI GGTNACC 1 cut(s) 839
PspFI CCCAGC 1 cut(s) 1569
PspGI CCWGG 6 cut(s) 141, 302, 691, 936, 1033, 2272
PspN4I GGNNCC 3 cut(s) 852, 2288, 2549
PspPI GGNCC 2 cut(s) 626, 1257
PsrI GAACNNNNNNTAC 2 cut(s) 83, 115
PstI CTGCAG 3 cut(s) 849, 894, 1536
PstNI CAGNNNCTG 1 cut(s) 1778
PsuI RGATCY 2 cut(s) 466, 1022
PsyI GACNNNGTC 1 cut(s) 1429
RsaI GTAC 7 cut(s) 293, 299, 591, 816, 852, 1884, 1918
RsaNI GTAC 7 cut(s) 292, 298, 590, 815, 851, 1883, 1917
RseI CAYNNNNRTG 1 cut(s) 2071
SaqAI TTAA 8 cut(s) 333, 420, 491, 861, 2147, 2334, 2372, 2382
Sau96I GGNCC 2 cut(s) 626, 1257
SbfI CCTGCAGG 1 cut(s) 849
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 3 cut(s) 148, 1439, 1613
ScrFI CCNGG 8 cut(s) 28, 143, 304, 509, 693, 938, 1035, 2274
SdaI CCTGCAGG 1 cut(s) 849
SduI GDGCHC 2 cut(s) 60, 246
SfaNI GCATC 3 cut(s) 1115, 1962, 2178
SfcI CTRYAG 5 cut(s) 845, 890, 1224, 1532, 2000
SinI GGWCC 1 cut(s) 1257
SmiMI CAYNNNNRTG 1 cut(s) 2071
SmlI CTYRAG 4 cut(s) 71, 156, 2371, 2398
SmoI CTYRAG 4 cut(s) 71, 156, 2371, 2398
SpeI ACTAGT 1 cut(s) 928
Sse8387I CCTGCAGG 1 cut(s) 849
SsiI CCGC 5 cut(s) 259, 500, 687, 1200, 1215
SspMI CTAG 5 cut(s) 929, 1370, 1613, 1787, 2084
StyD4I CCNGG 8 cut(s) 26, 141, 302, 507, 691, 936, 1033, 2272
StyI CCWWGG 2 cut(s) 1110, 1369
TaaI ACNGT 9 cut(s) 48, 329, 342, 397, 418, 613, 784, 1195, 2517
TaiI ACGT 4 cut(s) 153, 293, 360, 899
TaqI TCGA 9 cut(s) 228, 429, 434, 733, 981, 1271, 1278, 1328, 1585
TaqII GACCGA 1 cut(s) 2021
TatI WGTACW 3 cut(s) 297, 814, 1916
TauI GCSGC 2 cut(s) 261, 1202
TfiI GAWTC 5 cut(s) 431, 1273, 1280, 1288, 1439
Tru1I TTAA 8 cut(s) 333, 420, 491, 861, 2147, 2334, 2372, 2382
Tru9I TTAA 8 cut(s) 333, 420, 491, 861, 2147, 2334, 2372, 2382
TscAI CASTG 7 cut(s) 58, 372, 787, 1200, 1449, 1558, 2146
TseFI GTSAC 6 cut(s) 151, 442, 778, 1012, 1513, 2141
TseI GCWGC 8 cut(s) 539, 550, 889, 1167, 1406, 1531, 2367, 2413
Tsp45I GTSAC 6 cut(s) 151, 442, 778, 1012, 1513, 2141
TspGWI ACGGA 2 cut(s) 1442, 2064
TspRI CASTG 7 cut(s) 58, 372, 787, 1200, 1449, 1558, 2146
Tth111I GACNNNGTC 1 cut(s) 1429
Van91I CCANNNNNTGG 2 cut(s) 1040, 1677
Vha464I CTTAAG 1 cut(s) 2371
VpaK11BI GGWCC 1 cut(s) 1257
XagI CCTNNNNNAGG 1 cut(s) 2499
XapI RAATTY 5 cut(s) 755, 1028, 1395, 1795, 2350
XceI RCATGY 2 cut(s) 110, 2072
XcmI CCANNNNNNNNNTGG 1 cut(s) 1495
XmaJI CCTAGG 1 cut(s) 1369
XmiI GTMKAC 1 cut(s) 1999
XspI CTAG 5 cut(s) 929, 1370, 1613, 1787, 2084
ZrmI AGTACT 1 cut(s) 299
Zsp2I ATGCAT 3 cut(s) 1703, 1819, 2074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.