RchiOBHm_Chr1g0326431

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000039
Physical Location & Seq
Reverse (-)
14972220 .. 14985791
13572 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55606

Sequence Viewer

Length: 4566 bp
ATGGCGGACCTTGTGGCAGGGGGTGCTATAGGAGTACCATTTATTGTGCTGTATGAAGTCATTAAAGAAGCGATGGTCAAGAGTACGATGTTTAAACCCCTGCTTGTGGAGCTGTATTCGATAATGAACCATTTGGAACCACTGGTGGAGGAGGTAGGTAAGTATGGTAGAGAGTTAAATCGTCGAGAGAATGAGCTTAAAGACTTCAAAACACAAATGGAGAAGGGCATCGAGCTTATTCACAAGTGCTCAAATCCTAATCGGTTGCAAATCTACAAAAAGTATAGATACAGCAAAGAACTTCTTGAATTAAAGAACTTTCTTCAGAATCTGCTATCTATTCTGTCAGTGCAACAAGCAAGGGATGTGAAGGAGAAGTACTTGGTTGCAATGAAAGACGAGATGAATATTATGAAGGACTCCTTGGATGAGCTCAGAAATATAGAGGTAAAGCACCAAACAGACTTTGAAGTACCTGAGCTTCCTGCGTTGACAGTTGGATTTGATCTGCCTCTCAGAGAATTAAAGAAGAAGCTTCTTAAGAATGATAAAGTGTCAATGCTTGTGCTCACTGCTCCAGGAGGATGTGGAAAAACCACATTGGCAACTATGTTTTGTCAAGATGAGCAAGTCAAAGATATATTCAAGGACAATATCTTCTTTTTCACTGTTTCAAAGATGTTGAACTTCAACCTCATTGTACAACGACTACAGCAACGCAATGCTACCGAAGTACCTACTTTCCAAGACGAAGCAACTGCCCTCAAGTGGCTGCATAAATTTCTGGAGGAAGGACAGACACCTATGCTGTTGGTCCTGGATGACGTTTGGCCGGAATCAAGATCTCTTCTTGAAAAGTTTGATGAAGTGAAGGTGCCAAATTTTAAGATTTTGGTGACATCAAGATCACATTTTCCAGGATATGGTTCTCTACATCGTCTAAATTATTTATTGGATGAGGAAGATGCAATGAATCTTTTTCGCCATTCAGCCTCCCTGGGAGATGAAAGCTCCAATGTTCGATGGAACAGTCTTGCTGCAAAGATAGTAAAGCACTGTAAGGGACATCCACTTGCCATTAAAGTGGTTGGAAGATCACTTCGTGGAAAATCGTTTGAGTTCTGGCTTAAAAGTGCAGAGCAGTTGTCTCAAGGTGATTCTGAAATTGAAGTGCTTCTTGTGCTTCACCGTAGCTTGGATGCTTTGGATGAAAACGAAGCTCTCATCAAGGAATGTTTTGTAGACCTTGGTTCATTTCCTGAAGACCAAAAAATCCCAGTTGCTGCCCTCATTGATATGTGGGCAGAGTTATATGAAGAGCTAGATAAAGATTTTTTGGCCTTGGAGATTCTGCAAAAGCTTGCCACTCGAAGCCTGGCTGATCTTGTAGTCAGTAGGAACGAGAATGCGGAGGATGATGGCTACTACAGTGAACATTTTGTGACCCAACATGATCTTCTTAGAGAGCTGGCTATCTACCAAACAAAACTAGACCCAAATAGAAAAAGACTGGATGATGGCTACTACAGTGAACATTTTGTGACCCAACATGATCTTCTTAGAGAGCTGGCTATCTACCAAACAAAACTAGACCCAAATAGAAAAAGACTGTTTATTGGAAGCAGCAGAGACAATCTGCCCAAGTCCTTGACAGAACAGAAGCATCGACCTATCAAGCCTCGCCTAGTATCTATCTCTTCTGATGGGATGTTCTCAACAATTTGGCATAACATTGAACTAGCTGAGGTTGAGGTTCTAGTTTTGAATTTCAACAGAGAGAACTATGCTTTGCCCGAATTTGTGGAGAAAATGGAGAACCTGAAGGTTCTAATAGTCAGAAATCATGGTTCCTTGCCTGCTGAATTGAGTAATTTTCACCTACTGGATTCTTTACCAAATCTGAAGAGAATCAGACTAGAGAACGTTTCAATTCCTTCCATAACCAAGCATCCCATACAGTTGAAGAGTCTAAAGAAGATCTCTTTATTCATGTGTAGCATTGGTCAAGCTTTCAGCAATTGTTCCTTCCAAATTTCAGATGCATTTCCATATTTAGAGGAAATGAATATTGACTACAGCAAGGATTTGTTGGAATTGCCTGACGAGCTCTGCAATCTGATTTGGCTGAAAAAGCTCAGTATCACAAACTGTCATAAGCTATCCGTCTTGCCTTATGAGATTGGAGGGCTGATTAACTTAGAAGTTTTGAGGCTAAGGGCTTGTACAAACTTGGAAATACTTCCAAGATCTATCAAACACCTGAAGAAGCTAAATGTTCTTGACATAGCTAACTGTGTCAGCATTGTGGAGTTGTCTGAAGACATTGGCGAACTAAGCAGTTTAAGAAAGATCAACATGAGACAGTGCTCTAGATTGCAAGAGCTACCACTATCAGTTTGGGATCTTAAGCAACTAGAGAAAGTGATATGTGATGAGGACGTACGAGGGTTGTGGGAACCCTTCCTACCCAGACTCCCCAACGTAAGGGTGGTGATCATGAAAGAAAAATTTACCCTAGATTGGCTCCAAAATCCCACGGTACCTGTACGTCCAGCTGTTCCTGAACGCCCAACTATTCCTGAACGCCAGGCTGTTCCTGAACGCCCACCAGTTCTTGAAGGTCCACCAGTTCCTGTTGGGTTGGATTTGCCTTTAAAGGATTTGAAGAAATTTTTTCTTAAGGAAGGTAAGTCAAGGCTCGTGCTTATTGCTAATGGAGGACTGGGGAAAACTACGTTGGCGAGAAAGTTTTTTGAAGATCAGGACGTCAAAGGTATATTCAAGAAGAATATGTTCTTTGTTGTTGCTTCAAGTAAGCCCAGTTTGGAAGCTATTGTCCGAGAATTATATCGACAAAAGCAAGAACAAGCAGTACCGAAGAAGATTCGCGACTATAAAGTTGCAGTTCAATTGCTGGAAGACCTTCTAGAGGAAGCGGGAGAAGACCCTTTGCTGTTGGTACTGGATGATGTTTGGTCTCCCAAACTTCTTGATCTATTTAACAATTTCAAAATGCCAAATTACAAGTTTCTGGTGACATCAAGATCTCAATTTGAAAATTTTGGTGAAACATATCCTTTAGAGCCTTTGAATCGTGAACATACAATGGTACTTTTTCGTGATTTAGCCCACTTGGGAGAGAAGATTTCTCTTTTAGAAGAAGTTCAAGAAAAGATTTGGAAGATATGCAAGGGCTATCCACTTATCATTAAAGTATTTGCAACATCAATTTGCAAACAGCCTATGGAGAATTGGCAAAAATTTGTAATGAAAATGTCTGGAGCTTCTGTTTTGGATTCTGAGACTGAAGTGCTCATCTGCCTCCAAAGAAGCTTAGATCCTCTGGATAAAATCACCAGGCAATGTTTCATGGACCTTGGTTCATTCCCTGAAGACGAAAAAATCTCTGCTGCTGCCCTTATTGATATGTGGTCAGAGCTCTATCCTGAGCTAATTGAGGATACTTGCATTGAGAACCTCTACAAGCTGAGGAGCCGGAGTCTGGTTGATCTTCAAGTCACAGGAAAGGAGAGGATACAACGGGATGGCTACTACACTGAACACTTTGTCATCCAGCATGACGTGCTTAGACAACTGGCGATCTTCGAAGCGAGACTAGAACCAATTGAACAGAGACAAAGACTGAATATTACAGACACATCTAGCAATCTACCCATTGGCCAAGAAAAAGAAGAAGAACCAAATTCAACTCTTCAGCCCATCAAGACTCGCCTATTATCTATCTCTTCTGATGGTGTGTTCTCAACGAAATGGAATACTGTACAATTACCAGAAATTGAGGTGCTCCTTCTGAATATTAAGTCGAGTCGTAACTATGCGTTACCTCAATTTCTGGAGAGAACATCCAGATTAAAGGTTCTAATAGTCACAAAGTATGGTCGTGATTCTGCTGAGTTGAGTAATTTTCAACTACTGGGTTTGTTACCAAATCTGAAGAGAATCAGATTAGAGACTATTTTAACTCCTTCCATAACCAAGAACCTCACTCAACTGAAGAGTCTTGAGAAGATAACTTTGTCCTGGTGCGACGATATTGATAAAGCTTTCAGCAGCTCTTCCATCCAAATTCCACATGCATTTCCGAAGCTAGTGGAATTAAACATCGACAATTGCAACGATTTAGTGAAATTGCCTGCCGAACTCTGTGATCTTGTTTCTCTAAAGAAACTCAGTGTTACCGAGTGTTATAATCTGGTTACCATACCAGAAGCAATTGGAAAGTTGGTCAAATTAGAATTGCTGAGGCTAAGACGCTGTACGGAGTTGCAACAGCTTCCAGAATCGCTTCACAGCCTCCCAGAGCTGAACTTCCTTGACATAGCTGATTGCGTCAGCATGAAGAAGTTGCCTCAGAACATCGGAGCACTGAGCAGTTTAGAAAAGCTTGACATGAGAAAATGCTCTGGACTGGAAAAGCTTCCTTCATCAGTTATAAATCTTCGTAAGTTACGGGAAGTGATATGCGATGAAGAGAAAAAAAAGTTATGGGGACGCTATTTGGACTTTATGGAAAACCTAAGGAAGGTGGGTCCAGTGGAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

1521

Amino Acids

175.04

Weight (kDa)

6.11

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 2 - 134 1.5e-27 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 172 - 304 2e-14 NB-ARC domain
LRR_14 PF23598 701 - 766 6.3e-07 Leucine-rich repeat region
NB-ARC PF00931 888 - 1017 5.4e-11 NB-ARC domain
LRR_14 PF23598 1365 - 1451 9.4e-07 Leucine-rich repeat region
LRR_14 PF23598 1437 - 1514 4.9e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 4209, 4454
AatII GACGTC 1 cut(s) 2769
Acc65I GGTACC 1 cut(s) 2539
AccB1I GGYRCC 2 cut(s) 874, 2539
AccB7I CCANNNNNTGG 1 cut(s) 923
AccI GTMKAC 1 cut(s) 1242
AccII CGCG 1 cut(s) 2889
AciI CCGC 3 cut(s) 5, 1409, 2936
AclI AACGTT 1 cut(s) 1923
AclWI GGATC 2 cut(s) 2409, 3332
AcoI YGGCCR 2 cut(s) 830, 3679
AcyI GRCGYC 1 cut(s) 2766
AdeI CACNNNGTG 1 cut(s) 1103
AfiI CCNNNNNNNGG 9 cut(s) 106, 768, 923, 1195, 2484, 2520, 2929, 3502, 4543
AflII CTTAAG 3 cut(s) 539, 2405, 2678
AjiI CACGTC 1 cut(s) 3583
AjnI CCWGG 8 cut(s) 577, 816, 916, 996, 1374, 2586, 3356, 4040
AjuI GAANNNNNNNTTGG 8 cut(s) 407, 439, 1440, 1472, 1539, 1571, 2720, 2752
Alw21I GWGCWC 9 cut(s) 251, 435, 570, 2109, 2369, 3315, 3441, 3807, 4387
Alw26I GTCTC 8 cut(s) 1152, 1623, 2353, 2982, 3296, 3607, 3628, 3965
AlwI GGATC 2 cut(s) 2409, 3332
AlwNI CAGNNNCTG 3 cut(s) 331, 1283, 2633
AoxI GGCC 3 cut(s) 830, 1338, 3679
ApeKI GCWGC 7 cut(s) 772, 1037, 1283, 1623, 3410, 3413, 4071
Asp700I GAANNNNTTC 7 cut(s) 1173, 2238, 2792, 2922, 3162, 4305, 4437
Asp718I GGTACC 1 cut(s) 2539
AspS9I GGNCC 5 cut(s) 7, 814, 2621, 3373, 4550
AsuHPI GGTGA 8 cut(s) 907, 1166, 1178, 1868, 2503, 3046, 3077, 3346
AsuII TTCGAA 1 cut(s) 3606
AvaII GGWCC 5 cut(s) 7, 814, 2621, 3373, 4550
AxyI CCTNAGG 1 cut(s) 4538
BaeI ACNNNNGTAYC 2 cut(s) 717, 750
BalI TGGCCA 1 cut(s) 3681
BanI GGYRCC 2 cut(s) 874, 2539
BanII GRGCYC 3 cut(s) 435, 2109, 3441
BarI GAAGNNNNNNTAC 4 cut(s) 362, 394, 465, 497
BauI CACGAG 1 cut(s) 2699
BbsI GAAGAC 5 cut(s) 1269, 2325, 2925, 2949, 3399
Bbv12I GWGCWC 9 cut(s) 251, 435, 570, 2109, 2369, 3315, 3441, 3807, 4387
BbvCI CCTCAGC 3 cut(s) 1743, 3488, 4262
BbvI GCAGC 7 cut(s) 759, 1024, 1270, 1635, 3397, 3400, 4083
BccI CCATC 9 cut(s) 67, 1017, 1412, 1511, 1697, 3539, 3728, 3746, 4088
BcgI CGANNNNNNTGC 2 cut(s) 740, 774
BciT130I CCWGG 8 cut(s) 579, 818, 918, 998, 1376, 2588, 3358, 4042
BciVI GTATCC 2 cut(s) 3454, 3528
BclI TGATCA 1 cut(s) 2493
BcoDI GTCTC 8 cut(s) 1152, 1623, 2353, 2982, 3296, 3607, 3628, 3965
BfmI CTRYAG 5 cut(s) 27, 710, 1426, 1525, 2074
BfrI CTTAAG 3 cut(s) 539, 2405, 2678
BfuI GTATCC 2 cut(s) 3454, 3528
BglII AGATCT 4 cut(s) 842, 1977, 2246, 3044
BisI GCNGC 7 cut(s) 773, 1038, 1284, 1624, 3411, 3414, 4072
BlsI GCNGC 7 cut(s) 774, 1039, 1285, 1625, 3412, 3415, 4073
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 8 cut(s) 579, 818, 918, 998, 1376, 2588, 3358, 4042
Bme18I GGWCC 5 cut(s) 7, 814, 2621, 3373, 4550
BmgBI CACGTC 1 cut(s) 3583
BmgT120I GGNCC 5 cut(s) 7, 814, 2621, 3373, 4550
BmiI GGNNCC 8 cut(s) 138, 876, 1849, 2457, 2525, 2541, 3494, 4551
BmrFI CCNGG 8 cut(s) 579, 818, 918, 998, 1376, 2588, 3358, 4042
BmrI ACTGGG 4 cut(s) 1271, 2732, 2814, 3944
BmsI GCATC 6 cut(s) 237, 955, 1189, 1672, 1957, 2029
BmuI ACTGGG 4 cut(s) 1271, 2732, 2814, 3944
BpiI GAAGAC 5 cut(s) 1269, 2325, 2925, 2949, 3399
BpmI CTGGAG 4 cut(s) 561, 806, 3300, 3875
Bpu10I CCTNAGC 6 cut(s) 477, 1743, 2213, 3447, 3488, 4262
Bpu14I TTCGAA 1 cut(s) 3606
BpuEI CTTGAG 3 cut(s) 749, 1134, 4043
BsaHI GRCGYC 1 cut(s) 2766
BsaI GGTCTC 1 cut(s) 2982
BsaJI CCNNGG 7 cut(s) 423, 996, 997, 1246, 1341, 2535, 3376
BsaXI ACNNNNNCTCC 6 cut(s) 2457, 2487, 3273, 3303, 3484, 3514
Bsc4I CCNNNNNNNGG 9 cut(s) 106, 768, 923, 1195, 2484, 2520, 2929, 3502, 4543
Bse21I CCTNAGG 1 cut(s) 4538
Bse3DI GCAATG 4 cut(s) 396, 727, 975, 3368
BseBI CCWGG 8 cut(s) 579, 818, 918, 998, 1376, 2588, 3358, 4042
BseDI CCNNGG 7 cut(s) 423, 996, 997, 1246, 1341, 2535, 3376
BseLI CCNNNNNNNGG 9 cut(s) 106, 768, 923, 1195, 2484, 2520, 2929, 3502, 4543
BseMI GCAATG 4 cut(s) 396, 727, 975, 3368
BseRI GAGGAG 2 cut(s) 164, 3505
BseXI GCAGC 7 cut(s) 759, 1024, 1270, 1635, 3397, 3400, 4083
BsgI GTGCAG 1 cut(s) 1155
Bsh1236I CGCG 1 cut(s) 2889
BshFI GGCC 3 cut(s) 832, 1340, 3681
BshNI GGYRCC 2 cut(s) 874, 2539
BsiHKAI GWGCWC 9 cut(s) 251, 435, 570, 2109, 2369, 3315, 3441, 3807, 4387
BsiSI CCGG 2 cut(s) 833, 3496
BsiWI CGTACG 1 cut(s) 2440
BslFI GGGAC 2 cut(s) 1077, 4524
BslI CCNNNNNNNGG 9 cut(s) 106, 768, 923, 1195, 2484, 2520, 2929, 3502, 4543
BsmAI GTCTC 8 cut(s) 1152, 1623, 2353, 2982, 3296, 3607, 3628, 3965
BsmFI GGGAC 2 cut(s) 1077, 4524
BsmI GAATGC 1 cut(s) 1411
BsnI GGCC 3 cut(s) 832, 1340, 3681
Bso31I GGTCTC 1 cut(s) 2982
Bsp119I TTCGAA 1 cut(s) 3606
Bsp1286I GDGCHC 9 cut(s) 251, 435, 570, 2109, 2369, 3315, 3441, 3807, 4387
Bsp1407I TGTACA 3 cut(s) 700, 2222, 3781
Bsp68I TCGCGA 1 cut(s) 2889
BspACI CCGC 3 cut(s) 5, 1409, 2936
BspANI GGCC 3 cut(s) 832, 1340, 3681
BspFNI CGCG 1 cut(s) 2889
BspHI TCATGA 1 cut(s) 2496
BspLI GGNNCC 8 cut(s) 138, 876, 1849, 2457, 2525, 2541, 3494, 4551
BspPI GGATC 2 cut(s) 2409, 3332
BspQI GCTCTTC 2 cut(s) 1311, 4081
BspT104I TTCGAA 1 cut(s) 3606
BspT107I GGYRCC 2 cut(s) 874, 2539
BspTI CTTAAG 3 cut(s) 539, 2405, 2678
BspTNI GGTCTC 1 cut(s) 2982
BsrDI GCAATG 4 cut(s) 396, 727, 975, 3368
BsrGI TGTACA 3 cut(s) 700, 2222, 3781
BssECI CCNNGG 7 cut(s) 423, 996, 997, 1246, 1341, 2535, 3376
BssNI GRCGYC 1 cut(s) 2766
BssSI CACGAG 1 cut(s) 2699
BssT1I CCWWGG 4 cut(s) 423, 1246, 1341, 3376
Bst2BI CACGAG 1 cut(s) 2699
Bst2UI CCWGG 8 cut(s) 579, 818, 918, 998, 1376, 2588, 3358, 4042
BstACI GRCGYC 1 cut(s) 2766
BstAFI CTTAAG 3 cut(s) 539, 2405, 2678
BstAPI GCANNNNNTGC 2 cut(s) 23, 3583
BstAUI TGTACA 3 cut(s) 700, 2222, 3781
BstBI TTCGAA 1 cut(s) 3606
BstC8I GCNNGC 5 cut(s) 1362, 1470, 1569, 1857, 4155
BstDSI CCRYGG 1 cut(s) 2535
BstEII GGTNACC 1 cut(s) 4216
BstENI CCTNNNNNAGG 2 cut(s) 2927, 4541
BstFNI CGCG 1 cut(s) 2889
BstMAI GTCTC 8 cut(s) 1152, 1623, 2353, 2982, 3296, 3607, 3628, 3965
BstMWI GCNNNNNNNGC 7 cut(s) 23, 109, 1180, 2104, 2131, 2334, 3583
BstNI CCWGG 8 cut(s) 579, 818, 918, 998, 1376, 2588, 3358, 4042
BstNSI RCATGY 1 cut(s) 4097
BstPI GGTNACC 1 cut(s) 4216
BstSCI CCNGG 8 cut(s) 577, 816, 916, 996, 1374, 2586, 3356, 4040
BstSFI CTRYAG 5 cut(s) 27, 710, 1426, 1525, 2074
BstUI CGCG 1 cut(s) 2889
BstV1I GCAGC 7 cut(s) 759, 1024, 1270, 1635, 3397, 3400, 4083
BstV2I GAAGAC 5 cut(s) 1269, 2325, 2925, 2949, 3399
BstX2I RGATCY 6 cut(s) 842, 1977, 2246, 2401, 3044, 3337
BstXI CCANNNNNNTGG 1 cut(s) 1084
BstYI RGATCY 6 cut(s) 842, 1977, 2246, 2401, 3044, 3337
Bsu36I CCTNAGG 1 cut(s) 4538
BsuI GTATCC 2 cut(s) 3454, 3528
BsuRI GGCC 3 cut(s) 832, 1340, 3681
BtgI CCRYGG 1 cut(s) 2535
BtgZI GCGATG 2 cut(s) 86, 4500
BtrI CACGTC 1 cut(s) 3583
BtsI GCAGTG 1 cut(s) 570
BtuMI TCGCGA 1 cut(s) 2889
Cac8I GCNNGC 5 cut(s) 1362, 1470, 1569, 1857, 4155
CaiI CAGNNNCTG 3 cut(s) 331, 1283, 2633
CciI TCATGA 1 cut(s) 2496
Cfr13I GGNCC 5 cut(s) 7, 814, 2621, 3373, 4550
CseI GACGC 3 cut(s) 4281, 4339, 4521
DraI TTTAAA 2 cut(s) 94, 2655
DraIII CACNNNGTG 1 cut(s) 1103
EaeI YGGCCR 2 cut(s) 830, 3679
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 3 cut(s) 433, 2107, 3439
Eco130I CCWWGG 4 cut(s) 423, 1246, 1341, 3376
Eco24I GRGCYC 3 cut(s) 435, 2109, 3441
Eco31I GGTCTC 1 cut(s) 2982
Eco47I GGWCC 5 cut(s) 7, 814, 2621, 3373, 4550
Eco53kI GAGCTC 3 cut(s) 433, 2107, 3439
Eco81I CCTNAGG 1 cut(s) 4538
Eco91I GGTNACC 1 cut(s) 4216
EcoICRI GAGCTC 3 cut(s) 433, 2107, 3439
EcoNI CCTNNNNNAGG 2 cut(s) 2927, 4541
EcoO65I GGTNACC 1 cut(s) 4216
EcoRII CCWGG 8 cut(s) 577, 816, 916, 996, 1374, 2586, 3356, 4040
EcoT14I CCWWGG 4 cut(s) 423, 1246, 1341, 3376
EcoT22I ATGCAT 2 cut(s) 2044, 4099
EcoT38I GRGCYC 3 cut(s) 435, 2109, 3441
ErhI CCWWGG 4 cut(s) 423, 1246, 1341, 3376
FalI AAGNNNNNCTT 6 cut(s) 288, 320, 407, 439, 1161, 1193
FaqI GGGAC 2 cut(s) 1077, 4524
FauI CCCGC 1 cut(s) 2929
FbaI TGATCA 1 cut(s) 2493
FblI GTMKAC 1 cut(s) 1242
Fnu4HI GCNGC 7 cut(s) 773, 1038, 1284, 1624, 3411, 3414, 4072
FriOI GRGCYC 3 cut(s) 435, 2109, 3441
Fsp4HI GCNGC 7 cut(s) 773, 1038, 1284, 1624, 3411, 3414, 4072
GluI GCNGC 7 cut(s) 773, 1038, 1284, 1624, 3411, 3414, 4072
GsuI CTGGAG 4 cut(s) 561, 806, 3300, 3875
HaeIII GGCC 3 cut(s) 832, 1340, 3681
HapII CCGG 2 cut(s) 833, 3496
HgaI GACGC 3 cut(s) 4281, 4339, 4521
Hin1I GRCGYC 1 cut(s) 2766
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HindIII AAGCTT 7 cut(s) 533, 1358, 2007, 3331, 4062, 4403, 4436
HpaII CCGG 2 cut(s) 833, 3496
HphI GGTGA 8 cut(s) 907, 1166, 1178, 1868, 2503, 3046, 3077, 3346
Hpy166II GTNNAC 6 cut(s) 492, 1243, 1433, 1532, 2624, 3098
Hpy8I GTNNAC 6 cut(s) 492, 1243, 1433, 1532, 2624, 3098
Hpy99I CGWCG 2 cut(s) 186, 4052
HpyCH4IV ACGT 8 cut(s) 825, 1923, 2439, 2481, 2548, 2735, 2766, 3582
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 109, 1180, 2104, 2131, 2334, 3583
HpySE526I ACGT 8 cut(s) 825, 1923, 2439, 2481, 2548, 2735, 2766, 3582
Hsp92I GRCGYC 1 cut(s) 2766
KpnI GGTACC 1 cut(s) 2543
Ksp22I TGATCA 1 cut(s) 2493
LguI GCTCTTC 2 cut(s) 1311, 4081
LmnI GCTCC 8 cut(s) 109, 580, 1016, 2529, 3281, 3492, 3810, 4382
Lsp1109I GCAGC 7 cut(s) 759, 1024, 1270, 1635, 3397, 3400, 4083
LweI GCATC 6 cut(s) 237, 955, 1189, 1672, 1957, 2029
MaeII ACGT 8 cut(s) 825, 1923, 2439, 2481, 2548, 2735, 2766, 3582
MfeI CAATTG 5 cut(s) 2017, 2909, 3624, 4129, 4233
MflI RGATCY 6 cut(s) 842, 1977, 2246, 2401, 3044, 3337
MhlI GDGCHC 9 cut(s) 251, 435, 570, 2109, 2369, 3315, 3441, 3807, 4387
MlsI TGGCCA 1 cut(s) 3681
MluNI TGGCCA 1 cut(s) 3681
MlyI GAGTC 7 cut(s) 413, 1975, 2466, 3508, 3721, 3835, 4027
MmeI TCCRAC 4 cut(s) 478, 1069, 2070, 2622
Mox20I TGGCCA 1 cut(s) 3681
Mph1103I ATGCAT 2 cut(s) 2044, 4099
MroXI GAANNNNTTC 7 cut(s) 1173, 2238, 2792, 2922, 3162, 4305, 4437
MscI TGGCCA 1 cut(s) 3681
MslI CAYNNNNRTG 2 cut(s) 1082, 1295
Msp20I TGGCCA 1 cut(s) 3681
MspA1I CMGCKG 1 cut(s) 2555
MspCI CTTAAG 3 cut(s) 539, 2405, 2678
MspI CCGG 2 cut(s) 833, 3496
MspR9I CCNGG 8 cut(s) 579, 818, 918, 998, 1376, 2588, 3358, 4042
MssI GTTTAAAC 1 cut(s) 94
MunI CAATTG 5 cut(s) 2017, 2909, 3624, 4129, 4233
Mva1269I GAATGC 1 cut(s) 1411
MvaI CCWGG 8 cut(s) 579, 818, 918, 998, 1376, 2588, 3358, 4042
MvnI CGCG 1 cut(s) 2889
MwoI GCNNNNNNNGC 7 cut(s) 23, 109, 1180, 2104, 2131, 2334, 3583
NlaIV GGNNCC 8 cut(s) 138, 876, 1849, 2457, 2525, 2541, 3494, 4551
NmuCI GTSAC 6 cut(s) 895, 1441, 1540, 3034, 3517, 3886
NruI TCGCGA 1 cut(s) 2889
NsiI ATGCAT 2 cut(s) 2044, 4099
NspI RCATGY 1 cut(s) 4097
NspV TTCGAA 1 cut(s) 3606
PagI TCATGA 1 cut(s) 2496
PasI CCCWGGG 1 cut(s) 997
PciSI GCTCTTC 2 cut(s) 1311, 4081
PctI GAATGC 1 cut(s) 1411
PdmI GAANNNNTTC 7 cut(s) 1173, 2238, 2792, 2922, 3162, 4305, 4437
Pfl23II CGTACG 1 cut(s) 2440
PflMI CCANNNNNTGG 1 cut(s) 923
PfoI TCCNGGA 3 cut(s) 577, 816, 916
PkrI GCNGC 7 cut(s) 774, 1039, 1285, 1625, 3412, 3415, 4073
PleI GAGTC 7 cut(s) 413, 1974, 2466, 3507, 3721, 3834, 4026
PmeI GTTTAAAC 1 cut(s) 94
PpsI GAGTC 7 cut(s) 413, 1974, 2466, 3507, 3721, 3834, 4026
PsiI TTATAA 2 cut(s) 4209, 4454
Psp124BI GAGCTC 3 cut(s) 435, 2109, 3441
Psp1406I AACGTT 1 cut(s) 1923
Psp6I CCWGG 8 cut(s) 577, 816, 916, 996, 1374, 2586, 3356, 4040
PspEI GGTNACC 1 cut(s) 4216
PspGI CCWGG 8 cut(s) 577, 816, 916, 996, 1374, 2586, 3356, 4040
PspLI CGTACG 1 cut(s) 2440
PspN4I GGNNCC 8 cut(s) 138, 876, 1849, 2457, 2525, 2541, 3494, 4551
PspPI GGNCC 5 cut(s) 7, 814, 2621, 3373, 4550
PsrI GAACNNNNNNTAC 4 cut(s) 2448, 2480, 2856, 2888
PstNI CAGNNNCTG 3 cut(s) 331, 1283, 2633
PsuI RGATCY 6 cut(s) 842, 1977, 2246, 2401, 3044, 3337
PvuII CAGCTG 1 cut(s) 2555
RruI TCGCGA 1 cut(s) 2889
RseI CAYNNNNRTG 2 cut(s) 1082, 1295
SacI GAGCTC 3 cut(s) 435, 2109, 3441
SapI GCTCTTC 2 cut(s) 1311, 4081
SatI GCNGC 7 cut(s) 773, 1038, 1284, 1624, 3411, 3414, 4072
Sau96I GGNCC 5 cut(s) 7, 814, 2621, 3373, 4550
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 7 cut(s) 413, 1975, 2466, 3508, 3721, 3835, 4027
ScrFI CCNGG 8 cut(s) 579, 818, 918, 998, 1376, 2588, 3358, 4042
SduI GDGCHC 9 cut(s) 251, 435, 570, 2109, 2369, 3315, 3441, 3807, 4387
SfaNI GCATC 6 cut(s) 237, 955, 1189, 1672, 1957, 2029
SfcI CTRYAG 5 cut(s) 27, 710, 1426, 1525, 2074
SfuI TTCGAA 1 cut(s) 3606
SinI GGWCC 5 cut(s) 7, 814, 2621, 3373, 4550
SmiMI CAYNNNNRTG 2 cut(s) 1082, 1295
SmlI CTYRAG 6 cut(s) 539, 764, 1149, 2405, 2678, 4022
SmoI CTYRAG 6 cut(s) 539, 764, 1149, 2405, 2678, 4022
SsiI CCGC 3 cut(s) 5, 1409, 2936
SspI AATATT 4 cut(s) 409, 2068, 3649, 3817
SstI GAGCTC 3 cut(s) 435, 2109, 3441
StyD4I CCNGG 8 cut(s) 577, 816, 916, 996, 1374, 2586, 3356, 4040
StyI CCWWGG 4 cut(s) 423, 1246, 1341, 3376
TaiI ACGT 8 cut(s) 828, 1926, 2442, 2484, 2551, 2738, 2769, 3585
TatI WGTACW 4 cut(s) 378, 700, 2222, 3781
TseFI GTSAC 6 cut(s) 895, 1441, 1540, 3034, 3517, 3886
TseI GCWGC 7 cut(s) 772, 1037, 1283, 1623, 3410, 3413, 4071
Tsp45I GTSAC 6 cut(s) 895, 1441, 1540, 3034, 3517, 3886
TspGWI ACGGA 2 cut(s) 2152, 4295
Van91I CCANNNNNTGG 1 cut(s) 923
Vha464I CTTAAG 3 cut(s) 539, 2405, 2678
VpaK11BI GGWCC 5 cut(s) 7, 814, 2621, 3373, 4550
XagI CCTNNNNNAGG 2 cut(s) 2927, 4541
XbaI TCTAGA 2 cut(s) 2369, 2926
XceI RCATGY 1 cut(s) 4097
XcmI CCANNNNNNNNNTGG 3 cut(s) 1372, 2394, 2485
XmiI GTMKAC 1 cut(s) 1242
XmnI GAANNNNTTC 7 cut(s) 1173, 2238, 2792, 2922, 3162, 4305, 4437
ZraI GACGTC 1 cut(s) 2767
ZrmI AGTACT 1 cut(s) 380
Zsp2I ATGCAT 2 cut(s) 2044, 4099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.