Rh2BG176300

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000039
Physical Location & Seq
Forward (+)
15620149 .. 15630678
10530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG176300.1

Sequence Viewer

Length: 3369 bp
ATGAATTTGGACAACATTGAACTGGCAGAGGTTGAAGTTCTAGTTTTGAATTTTGACGCACAGAACTATGCTTTACCCGAATTTGTGGTCAAGATGGACAAACTGAAGGTTTTAATAGTCAGAAATCATGGTTTTTTACCTGCAGAATTGTGCAACATTCAACTGCTGGGTTCTTTATCAAATCTGAAGAGAATAAGATTAGAGCGCATTTCAATTTCTTCCATAACCAAGAATCTCATACAGTTGAAGAGTGTAAAGAAGATATCTCTATTCATGTGCAACATTGGTCAAGCTTTCAGCAATTGTTCCCTTCAAATATCAGATGCATTGCCATATTTAGAGGAAATGAACATTGACTATTGCAATGATTTGGTGGAGTTGCCTGCCGCACTGTGTGCTCTGGTTAACCTAAAGAAGCTCAGTATAACCAACTCGCATAAGCTATCTGCCTTGCCTGAAGAGATTGGAAAGCTGGTCAATTTAGAAGTATTGAGGCTGAGGTCTTGTACAGACTTGGCAAAGTTGCCAGACTCGACTAGGAACCTAGAGAAGTTAAACTTTCTAGACATAGCTGATTGCTTCAGCATTCGGGAATTGCCTGAAGACTTTGGTGGAATGAGCAGTTTAAAAAAGATCAACATGAGAATGTGTTCAAGATTGCAAGAGCTGCCTTCATCAGTTGTGGATCTTGAGCAGTTGCAGGAAGTGCCTGATCGACAATATAGAGGTTGTTGTATAGAATCAAGAATGGACAACCTTGTTGCAGGGGGTGCTATGGGTGTACCATTTAATGCGCTCTATGATGTCATTAAGCAAGTGGTGGTCAAGACTAAGATGTTTAAGCCTCTCCTCAAAGATCTTGACTCAACGATAAATTCTTTGAAACCACTGATCGATGAGATGAAAAAGTGCAATAAGGTGTTGGATCATCCAGAGAATGAACTTAAAGGATTTGAAGTACAAATGCAGAAGGGTGCGGTGCTCATTCCCAAGTGCTCTAAGGTTAGATGGTGGAATATTTGCAAAAAGTATAAATACACCAACCAACTTGTTGGATTAAACAGCTCTCTTCGGAGTTTGTATGATATATTAGAAGTGCAAGTAGCTAGAGATATGAAGAATACGCTGGTTGAAGTAAGAAATATAGGGACGGCTGTCCAGCATACTGATACAACAATAACGGAAGTTGCAGCGAATGTGCAACAGAACTTGGCTGCGACAAATGATATTGAGATGGTGGTCCATCAGACTGATGTAACAACCTTGCAAGTGGCAAGGCATGTGAGAAATATAGATGTTGTAGTTCAGCGTACTGATGAAACAAGCTTGCAAGTAGCAAGGGATGTGAGAAACATAGCGACAGTGGTACAGCGGATTGATGACAATGTTGTGTTACTGGTACACAATCAGAAAATAGACCAGGTTCGAGGTTGGGGTGCAGTACCTGTAGGTGCACCATTTACAGTTGGAGTGGATATGCCTTTGAGGGAATTGAAGATTAAGCTTCTTAAGGATGAGAAAGTAACAATGCTTGTGCTCACTGCTCCAGGAGGATGTGGGAAAACCACTTTAGCAATAAAGTTTTGTGAAGATTACGAAGTCAAAGACAAATTTAAGGACAATATCTTCTTTGTCACTGTCTCAAAGAAGTCCGATGACCTTGTTGTACAAGAGCTTTATCACTGCAGGGGTTCTAAAATTCCTACTTTGCACGGTGAAGTTGATGTGGTTAAGTGGCTACAGCAATTCCGGATTGGAGTAGGAAAGAATCCTGTACTTTTTGTCTTGGATGATGTTTGGTCTGGATCGGAATCCCTTCTTCAGAAGTTTGATGATTTCAAAATGCCAAATTCCAAGATTTTGGTGACATCAAGATTTAGATTTCCAAGATTTGGTACTCAACATATTCTAGAACCATTGAATATTGAAGATGCAGCAACTCTTTTCAAACATTCAGCATCCCTTGGAGATGGAAGCTGTTATGTTCCTGAAGATATTATGAGAAAGATAATAGAGCATTTCAAAGGATCTCCACTTGCCATTAGAGTGGTTGGAAGATCTCTTTGTGGAAAACCTGTAGAGTCCTGGCTGAAAAGAGCATCTACACTAAAAGGTGCTTCTATTCTTAATTCTGAGGCTACATTGCTAGATGGCCTTCAGAGTTGTTTAGACGCCTTGAATGAAGAAGATCATATCTTGAAGGAATGCTTCTTAGACCTGGGTTCATTTCCTGAAGACCAAAGGATCTCTGCTGCTGCTCTCATTGATATGTGGGCAGAACACGAGCTTGCTGCTCGAAGTCTGGCTAATCTTCTAATCACAAGGAAGGAGAAGATGGAGGCAGATGGGTACTACAGTGAACACTTCATTACTCAGCATGATTTGCTTAGACAGTTGGCTATCTACCAGCCAAAGCTAGATGCAAAGAATAAAAGACGGATCATAGACAAATGGGGAGACAATCTACCTGAGTGCTTGACAGGACAGAAGCATCAACCCATCAAGGCCCGCCTATTATCTATCTCCTCCGATGGAGTGTTCTCGACAAATTTGGACAACATTGAACTGGCAGAGGTTGAAGTTCTAGTTTTGAATTTTGACACACAGAACTATGCTTTACCCGAATTTGTGGTTAAGATGGACAAACTGAAGGTTTTAATAGTCACAAATCATGGTTTTTTACCTGCTGAATTGTGCAACATTCAACTGCTGGGTTCTTTGTCAAATCTGAGGAGAATCAGATTAGAGCGCATTTCAATTTCTTCCATAACCAAGAATCTCATACAGTTGAAGAGTGTAAAGAAGATATCTCTATTCATGTGCAACATTGGTCAAGCTTTCAGCAATTGTTCCCTTCAAATATCAGATGCATTGCCATATTTAGAGGAAATGAACATTGACTACTGCAATGATTTGGTGGAGTTGCCTGCCGCTCTCTGTGCTCTGGTTAACCTAAAGAAGCTCAGCATAGCCAACTCGCATAAGCTATCTGCCTTGCCTGAAGAGATTGGAAAGCTGGTCAATTTAGAAGTATTGCGGCTAAGGTCTTGTACAGACTTGGCAAAGTTGCCAGACTCAACTAGGAACCTAAAGAAGTTAAAGTTTCTAGACATAGCTGATTGCTTCAGCATTCGGGAATTGCCTGAAGACTTTGGTGGAATGACCAGTTTAAAGAAGATCAACATGAGAAAGTGTTCAAGATTGCAAGAGCTGCCTTCATCGGTTTTGGATCTTGAGCAGTTACAGGAAGTGGTATGTGATGAAGACACAGGTGATTTATGGGAACTCTTCTCACCCCATCTCAGAAACCTCCATATAAAGCTGGTCAAAGAGAATGTCAACCTGAATTGGCTACATAAGCTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

1122

Amino Acids

126.59

Weight (kDa)

6.65

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 131 - 235 1.5e-12 Leucine-rich repeat region
RPW8 PF05659 252 - 386 1e-32 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 494 - 626 1.3e-10 NB-ARC domain
LRR_14 PF23598 978 - 1083 1.9e-13 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 148, 2692
AccB7I CCANNNNNTGG 1 cut(s) 1892
AccBSI CCGCTC 1 cut(s) 2933
AccIII TCCGGA 1 cut(s) 1749
AciI CCGC 6 cut(s) 387, 977, 1372, 2509, 2931, 3037
AclWI GGATC 7 cut(s) 693, 933, 1813, 2035, 2252, 2447, 3237
AcyI GRCGYC 1 cut(s) 2172
AdeI CACNNNGTG 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 1892
AflII CTTAAG 1 cut(s) 1508
AjnI CCWGG 4 cut(s) 1419, 1546, 2084, 2217
Alw21I GWGCWC 6 cut(s) 400, 984, 998, 1456, 1539, 2944
Alw26I GTCTC 2 cut(s) 1645, 2451
Alw44I GTGCAC 1 cut(s) 1452
AlwI GGATC 7 cut(s) 693, 933, 1813, 2035, 2252, 2447, 3237
AlwNI CAGNNNCTG 1 cut(s) 1445
Aor13HI TCCGGA 1 cut(s) 1749
AoxI GGCC 2 cut(s) 2152, 2505
ApaLI GTGCAC 1 cut(s) 1452
ApeKI GCWGC 8 cut(s) 667, 1190, 1214, 1934, 2252, 2255, 2291, 3211
ArsI GACNNNNNNTTYG 4 cut(s) 72, 104, 3321, 3353
Asp700I GAANNNNTTC 3 cut(s) 649, 1815, 3193
AspLEI GCGC 3 cut(s) 207, 796, 2751
AspS9I GGNCC 2 cut(s) 1240, 2506
AsuHPI GGTGA 4 cut(s) 1727, 1876, 3284, 3285
AvaII GGWCC 1 cut(s) 1240
BaeGI GKGCMC 1 cut(s) 1456
BaeI ACNNNNGTAYC 2 cut(s) 2341, 2374
BauI CACGAG 1 cut(s) 2282
BbsI GAAGAC 4 cut(s) 609, 2241, 3153, 3270
Bbv12I GWGCWC 6 cut(s) 400, 984, 998, 1456, 1539, 2944
BbvCI CCTCAGC 1 cut(s) 497
BbvI GCAGC 8 cut(s) 654, 1201, 1202, 1946, 2239, 2242, 2278, 3198
BceAI ACGGC 1 cut(s) 1167
BcgI CGANNNNNNTGC 2 cut(s) 2273, 2307
BciT130I CCWGG 4 cut(s) 1421, 1548, 2086, 2219
BcoDI GTCTC 2 cut(s) 1645, 2451
BfmI CTRYAG 6 cut(s) 141, 1446, 1684, 1739, 2076, 2353
BfrI CTTAAG 1 cut(s) 1508
BfuAI ACCTGC 2 cut(s) 148, 2692
BglII AGATCT 2 cut(s) 856, 2057
BlpI GCTNAGC 1 cut(s) 2963
Bme1390I CCNGG 4 cut(s) 1421, 1548, 2086, 2219
Bme18I GGWCC 1 cut(s) 1240
BmgT120I GGNCC 2 cut(s) 1240, 2506
BmiI GGNNCC 2 cut(s) 542, 3086
BmrFI CCNGG 4 cut(s) 1421, 1548, 2086, 2219
BmsI GCATC 7 cut(s) 313, 1921, 1967, 2108, 2410, 2500, 2857
BoxI GACNNNNGTC 1 cut(s) 1154
BpiI GAAGAC 4 cut(s) 609, 2241, 3153, 3270
BpmI CTGGAG 1 cut(s) 1530
Bpu10I CCTNAGC 2 cut(s) 497, 3041
Bpu1102I GCTNAGC 1 cut(s) 2963
BpuEI CTTGAG 2 cut(s) 710, 3254
Bsa29I ATCGAT 1 cut(s) 894
BsaBI GATNNNNATC 1 cut(s) 1810
BsaHI GRCGYC 1 cut(s) 2172
BsaJI CCNNGG 2 cut(s) 1963, 2218
BsaWI WCCGGW 1 cut(s) 1749
Bsc4I CCNNNNNNNGG 1 cut(s) 1892
Bse1I ACTGG 4 cut(s) 27, 1401, 2571, 3165
Bse3DI GCAATG 5 cut(s) 326, 370, 2141, 2870, 2914
Bse8I GATNNNNATC 1 cut(s) 1810
BseAI TCCGGA 1 cut(s) 1749
BseBI CCWGG 4 cut(s) 1421, 1548, 2086, 2219
BseCI ATCGAT 1 cut(s) 894
BseDI CCNNGG 2 cut(s) 1963, 2218
BseGI GGATG 6 cut(s) 928, 1348, 1519, 1559, 1795, 1958
BseJI GATNNNNATC 1 cut(s) 1810
BseLI CCNNNNNNNGG 1 cut(s) 1892
BseMI GCAATG 5 cut(s) 326, 370, 2141, 2870, 2914
BseMII CTCAG 8 cut(s) 433, 488, 2124, 2387, 2460, 2720, 2977, 3316
BseNI ACTGG 4 cut(s) 27, 1401, 2571, 3165
BseRI GAGGAG 3 cut(s) 839, 2515, 2746
BseSI GKGCMC 1 cut(s) 1456
BseXI GCAGC 8 cut(s) 654, 1201, 1202, 1946, 2239, 2242, 2278, 3198
BseYI CCCAGC 2 cut(s) 166, 2710
BsgI GTGCAG 1 cut(s) 1458
BshFI GGCC 2 cut(s) 2154, 2507
BshVI ATCGAT 1 cut(s) 894
BsiHKAI GWGCWC 6 cut(s) 400, 984, 998, 1456, 1539, 2944
BsiSI CCGG 1 cut(s) 1750
BslFI GGGAC 1 cut(s) 1162
BslI CCNNNNNNNGG 1 cut(s) 1892
BsmAI GTCTC 2 cut(s) 1645, 2451
BsmFI GGGAC 1 cut(s) 1162
BsmI GAATGC 3 cut(s) 585, 2210, 3129
BsnI GGCC 2 cut(s) 2154, 2507
Bsp1286I GDGCHC 6 cut(s) 400, 984, 998, 1456, 1539, 2944
Bsp13I TCCGGA 1 cut(s) 1749
Bsp1407I TGTACA 3 cut(s) 506, 1666, 3050
Bsp1720I GCTNAGC 1 cut(s) 2963
BspACI CCGC 6 cut(s) 387, 977, 1372, 2509, 2931, 3037
BspANI GGCC 2 cut(s) 2154, 2507
BspCNI CTCAG 8 cut(s) 432, 489, 2125, 2386, 2461, 2721, 2976, 3315
BspDI ATCGAT 1 cut(s) 894
BspEI TCCGGA 1 cut(s) 1749
BspLI GGNNCC 2 cut(s) 542, 3086
BspMAI CTGCAG 2 cut(s) 145, 1688
BspMI ACCTGC 2 cut(s) 148, 2692
BspPI GGATC 7 cut(s) 693, 933, 1813, 2035, 2252, 2447, 3237
BspTI CTTAAG 1 cut(s) 1508
BsrBI CCGCTC 1 cut(s) 2933
BsrDI GCAATG 5 cut(s) 326, 370, 2141, 2870, 2914
BsrGI TGTACA 3 cut(s) 506, 1666, 3050
BsrI ACTGG 4 cut(s) 27, 1401, 2571, 3165
BssECI CCNNGG 2 cut(s) 1963, 2218
BssNI GRCGYC 1 cut(s) 2172
BssSI CACGAG 1 cut(s) 2282
BssT1I CCWWGG 1 cut(s) 1963
Bst2BI CACGAG 1 cut(s) 2282
Bst2UI CCWGG 4 cut(s) 1421, 1548, 2086, 2219
Bst4CI ACNGT 9 cut(s) 243, 393, 1363, 1465, 1639, 1715, 2357, 2394, 2787
Bst6I CTCTTC 7 cut(s) 182, 242, 453, 1074, 2786, 2997, 3293
BstACI GRCGYC 1 cut(s) 2172
BstAFI CTTAAG 1 cut(s) 1508
BstAPI GCANNNNNTGC 6 cut(s) 395, 667, 706, 770, 2383, 3211
BstAUI TGTACA 3 cut(s) 506, 1666, 3050
BstC8I GCNNGC 5 cut(s) 384, 1328, 2289, 2509, 2928
BstF5I GGATG 6 cut(s) 928, 1348, 1519, 1559, 1795, 1958
BstHHI GCGC 3 cut(s) 207, 796, 2751
BstMAI GTCTC 2 cut(s) 1645, 2451
BstMWI GCNNNNNNNGC 8 cut(s) 395, 667, 706, 770, 2383, 2939, 3211, 3358
BstNI CCWGG 4 cut(s) 1421, 1548, 2086, 2219
BstNSI RCATGY 1 cut(s) 1283
BstPAI GACNNNNGTC 1 cut(s) 1154
BstSCI CCNGG 4 cut(s) 1419, 1546, 2084, 2217
BstSFI CTRYAG 6 cut(s) 141, 1446, 1684, 1739, 2076, 2353
BstSLI GKGCMC 1 cut(s) 1456
BstV1I GCAGC 8 cut(s) 654, 1201, 1202, 1946, 2239, 2242, 2278, 3198
BstV2I GAAGAC 4 cut(s) 609, 2241, 3153, 3270
BstX2I RGATCY 6 cut(s) 685, 856, 2027, 2057, 2244, 3229
BstXI CCANNNNNNTGG 3 cut(s) 1052, 1861, 2047
BstYI RGATCY 6 cut(s) 685, 856, 2027, 2057, 2244, 3229
Bsu15I ATCGAT 1 cut(s) 894
BsuRI GGCC 2 cut(s) 2154, 2507
BsuTUI ATCGAT 1 cut(s) 894
BtsCI GGATG 6 cut(s) 928, 1348, 1519, 1559, 1795, 1958
BtsI GCAGTG 2 cut(s) 1539, 1681
BtsIMutI CAGTG 7 cut(s) 389, 887, 1368, 1539, 1635, 1681, 2362
BveI ACCTGC 2 cut(s) 148, 2692
Cac8I GCNNGC 5 cut(s) 384, 1328, 2289, 2509, 2928
CaiI CAGNNNCTG 1 cut(s) 1445
CfoI GCGC 3 cut(s) 207, 796, 2751
Cfr13I GGNCC 2 cut(s) 1240, 2506
ClaI ATCGAT 1 cut(s) 894
CseI GACGC 2 cut(s) 65, 2180
CsiI ACCWGGT 1 cut(s) 1419
CviAII CATG 8 cut(s) 128, 274, 640, 1280, 2378, 2672, 2818, 3184
DraI TTTAAA 2 cut(s) 627, 3171
DraIII CACNNNGTG 1 cut(s) 395
Eam1104I CTCTTC 7 cut(s) 182, 242, 453, 1074, 2786, 2997, 3293
EarI CTCTTC 7 cut(s) 182, 242, 453, 1074, 2786, 2997, 3293
Eco130I CCWWGG 1 cut(s) 1963
Eco32I GATATC 2 cut(s) 264, 2808
Eco47I GGWCC 1 cut(s) 1240
EcoRII CCWGG 4 cut(s) 1419, 1546, 2084, 2217
EcoRV GATATC 2 cut(s) 264, 2808
EcoT14I CCWWGG 1 cut(s) 1963
EcoT22I ATGCAT 2 cut(s) 328, 2872
ErhI CCWWGG 1 cut(s) 1963
FaeI CATG 8 cut(s) 131, 277, 643, 1283, 2381, 2675, 2821, 3187
FalI AAGNNNNNCTT 4 cut(s) 542, 574, 2192, 2224
FaqI GGGAC 1 cut(s) 1162
FatI CATG 8 cut(s) 127, 273, 639, 1279, 2377, 2671, 2817, 3183
FauI CCCGC 1 cut(s) 2516
FokI GGATG 6 cut(s) 915, 1355, 1526, 1566, 1802, 1945
GlaI GCGC 3 cut(s) 206, 795, 2750
GsaI CCCAGC 2 cut(s) 170, 2714
GsuI CTGGAG 1 cut(s) 1530
HaeIII GGCC 2 cut(s) 2154, 2507
HapII CCGG 1 cut(s) 1750
HgaI GACGC 2 cut(s) 65, 2180
HhaI GCGC 3 cut(s) 207, 796, 2751
Hin1I GRCGYC 1 cut(s) 2172
Hin1II CATG 8 cut(s) 131, 277, 643, 1283, 2381, 2675, 2821, 3187
Hin6I GCGC 3 cut(s) 205, 794, 2749
HinP1I GCGC 3 cut(s) 205, 794, 2749
HincII GTYRAC 3 cut(s) 406, 2950, 3340
HindII GTYRAC 3 cut(s) 406, 2950, 3340
HindIII AAGCTT 5 cut(s) 291, 1324, 1502, 2835, 3359
HpaI GTTAAC 2 cut(s) 406, 2950
HpaII CCGG 1 cut(s) 1750
HphI GGTGA 4 cut(s) 1727, 1876, 3284, 3285
Hpy166II GTNNAC 7 cut(s) 406, 782, 1402, 1454, 2360, 2950, 3340
Hpy8I GTNNAC 7 cut(s) 406, 782, 1402, 1454, 2360, 2950, 3340
HpyCH4III ACNGT 9 cut(s) 243, 393, 1363, 1465, 1639, 1715, 2357, 2394, 2787
HpyF10VI GCNNNNNNNGC 8 cut(s) 395, 667, 706, 770, 2383, 2939, 3211, 3358
Hsp92I GRCGYC 1 cut(s) 2172
Hsp92II CATG 8 cut(s) 131, 277, 643, 1283, 2381, 2675, 2821, 3187
HspAI GCGC 3 cut(s) 205, 794, 2749
Kpn2I TCCGGA 1 cut(s) 1749
KspAI GTTAAC 2 cut(s) 406, 2950
LmnI GCTCC 1 cut(s) 1549
Lsp1109I GCAGC 8 cut(s) 654, 1201, 1202, 1946, 2239, 2242, 2278, 3198
LweI GCATC 7 cut(s) 313, 1921, 1967, 2108, 2410, 2500, 2857
MabI ACCWGGT 1 cut(s) 1419
MaeIII GTNAC 7 cut(s) 1255, 1392, 1522, 1633, 1864, 2662, 3240
MbiI CCGCTC 1 cut(s) 2933
MfeI CAATTG 2 cut(s) 301, 2845
MflI RGATCY 6 cut(s) 685, 856, 2027, 2057, 2244, 3229
MhlI GDGCHC 6 cut(s) 400, 984, 998, 1456, 1539, 2944
MlyI GAGTC 4 cut(s) 524, 857, 2090, 3068
MmeI TCCRAC 4 cut(s) 903, 1033, 1447, 2032
Mph1103I ATGCAT 2 cut(s) 328, 2872
MroI TCCGGA 1 cut(s) 1749
MroXI GAANNNNTTC 3 cut(s) 649, 1815, 3193
MslI CAYNNNNRTG 3 cut(s) 644, 2045, 2267
MspA1I CMGCKG 1 cut(s) 1372
MspCI CTTAAG 1 cut(s) 1508
MspI CCGG 1 cut(s) 1750
MspR9I CCNGG 4 cut(s) 1421, 1548, 2086, 2219
MunI CAATTG 2 cut(s) 301, 2845
Mva1269I GAATGC 3 cut(s) 585, 2210, 3129
MvaI CCWGG 4 cut(s) 1421, 1548, 2086, 2219
MwoI GCNNNNNNNGC 8 cut(s) 395, 667, 706, 770, 2383, 2939, 3211, 3358
NlaIII CATG 8 cut(s) 131, 277, 643, 1283, 2381, 2675, 2821, 3187
NlaIV GGNNCC 2 cut(s) 542, 3086
NmuCI GTSAC 3 cut(s) 1633, 1864, 2662
NsiI ATGCAT 2 cut(s) 328, 2872
NspI RCATGY 1 cut(s) 1283
PctI GAATGC 3 cut(s) 585, 2210, 3129
PdmI GAANNNNTTC 3 cut(s) 649, 1815, 3193
PfeI GAWTC 6 cut(s) 232, 740, 1768, 1811, 2736, 2776
PflMI CCANNNNNTGG 1 cut(s) 1892
PfoI TCCNGGA 1 cut(s) 1546
PleI GAGTC 4 cut(s) 524, 857, 2089, 3068
PpsI GAGTC 4 cut(s) 524, 857, 2089, 3068
PshAI GACNNNNGTC 1 cut(s) 1154
Psp6I CCWGG 4 cut(s) 1419, 1546, 2084, 2217
PspFI CCCAGC 2 cut(s) 166, 2710
PspGI CCWGG 4 cut(s) 1419, 1546, 2084, 2217
PspN4I GGNNCC 2 cut(s) 542, 3086
PspPI GGNCC 2 cut(s) 1240, 2506
PsrI GAACNNNNNNTAC 2 cut(s) 2885, 2917
PstI CTGCAG 2 cut(s) 145, 1688
PstNI CAGNNNCTG 1 cut(s) 1445
PsuI RGATCY 6 cut(s) 685, 856, 2027, 2057, 2244, 3229
RseI CAYNNNNRTG 3 cut(s) 644, 2045, 2267
Sau96I GGNCC 2 cut(s) 1240, 2506
SchI GAGTC 4 cut(s) 524, 857, 2090, 3068
ScrFI CCNGG 4 cut(s) 1421, 1548, 2086, 2219
SduI GDGCHC 6 cut(s) 400, 984, 998, 1456, 1539, 2944
SexAI ACCWGGT 1 cut(s) 1419
SfaNI GCATC 7 cut(s) 313, 1921, 1967, 2108, 2410, 2500, 2857
SfcI CTRYAG 6 cut(s) 141, 1446, 1684, 1739, 2076, 2353
SinI GGWCC 1 cut(s) 1240
SmiMI CAYNNNNRTG 3 cut(s) 644, 2045, 2267
SmlI CTYRAG 3 cut(s) 689, 1508, 3233
SmoI CTYRAG 3 cut(s) 689, 1508, 3233
SsiI CCGC 6 cut(s) 387, 977, 1372, 2509, 2931, 3037
SspI AATATT 2 cut(s) 1018, 1924
StyD4I CCNGG 4 cut(s) 1419, 1546, 2084, 2217
StyI CCWWGG 1 cut(s) 1963
TaaI ACNGT 9 cut(s) 243, 393, 1363, 1465, 1639, 1715, 2357, 2394, 2787
TaqI TCGA 6 cut(s) 533, 715, 894, 1426, 2296, 2543
TatI WGTACW 5 cut(s) 506, 958, 1666, 1774, 3050
TauI GCSGC 3 cut(s) 389, 2933, 3040
TfiI GAWTC 6 cut(s) 232, 740, 1768, 1811, 2736, 2776
TscAI CASTG 7 cut(s) 396, 894, 1368, 1546, 1642, 1688, 2362
TseFI GTSAC 3 cut(s) 1633, 1864, 2662
TseI GCWGC 8 cut(s) 667, 1190, 1214, 1934, 2252, 2255, 2291, 3211
Tsp45I GTSAC 3 cut(s) 1633, 1864, 2662
TspGWI ACGGA 2 cut(s) 1196, 2452
TspRI CASTG 7 cut(s) 396, 894, 1368, 1546, 1642, 1688, 2362
Van91I CCANNNNNTGG 1 cut(s) 1892
Vha464I CTTAAG 1 cut(s) 1508
VneI GTGCAC 1 cut(s) 1452
VpaK11BI GGWCC 1 cut(s) 1240
XbaI TCTAGA 3 cut(s) 562, 1909, 3106
XceI RCATGY 1 cut(s) 1283
XmnI GAANNNNTTC 3 cut(s) 649, 1815, 3193
Zsp2I ATGCAT 2 cut(s) 328, 2872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.