MD15G1277800.v1.1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000039
Physical Location & Seq
Forward (+)
24490419 .. 24492004
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1277800.v1.1.491

Sequence Viewer

Length: 1083 bp
ATGGTTAAATGTTCGTCTGCGGTGCCTGAAGCGCCATCAGTTACAGTCGGGTTGGATTTGCCGTTGAAGGAGTTGAAGGTGAAGCTCCTTAAGGATGAAAAGGTGTCTATGCTTGTGCTGACCGCCGCTGGACGATGCGGGAAAACCACCTTGGCTAAAATGTTTTGTCAAGATCAAGAAGTCAAAGATACATTCAAGAACAACATCTTCTTTGTCAATGTCTCGAAAAAACCCAACTTGGACCTTATTGTACACGAACTATATCAACGGAAGGGGTCCGAGCTGCCTGCTTTCGAAAACGAAGACATGGCAGCTAACTGGTTGCAACAATTTCTGATGGAATCAAGACAAAATCCTCTACTGTTTGTCCTGGATGATGTTTGGTCAGGATCAGAGTCCCTTCTTGAGAAGTTTGATCAATTCAAGTTTTCAAATTACAAGATTTTGGTCACATCAAGATTTGCATTTCCAAGATTCGGTTCTCCTTATCATTTGGCACCATTGAATGATGAAGATGCAATGGCTCTTTTTCACTATTCTGCATCCTTGGAAGATAAGAGCTCTTATACTTACGAAGATCTTTCGAGAAAGATTATCAAGCGCTGTAAGGGATGCCCACTTGCCATTGCATTGGTTGGGAGATCACTTCGCGGCCAGCCTATAGAAATCTGGCACAAAAGAGTAGTGGAATGGTGCAAAAGTTCATCTATTCTTGATTCTGACAAGGATTTACTTGCTTGCCTCCAAAGCAGCTTAGATGCCTTGGATAAAGAGAAGGTTATCATCAAGGAATGTTTCCTCGATCTAGGTTCTTTTCCGGAGGACCAAAGAATTGCTGCTGCCGCTCTCATTGATATGTGGGCGCAGTTATATGGTCTAGATGAAGAAATTCTGACCATTGCCAACCTTCACGAGCTCACCGCTCGAAGTTTAGCTAATCTTGTTGTCACAAGACATGAGGGGGAGACAGATGGCTATTACACTGAACACTTTGTCACCCAGCACGACATGCTTAAGAGAGTTGGCGATCCATCCGGCGAGTCAAGACCCAGCACGACATCACTTGATTTAGTTGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

361

Amino Acids

40.75

Weight (kDa)

5.33

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 22 - 153 3.4e-12 NB-ARC domain
AAA_22 PF13401 36 - 138 3.8e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 22, 496
AccBSI CCGCTC 2 cut(s) 845, 923
AccII CGCG 1 cut(s) 651
AccIII TCCGGA 1 cut(s) 817
AciI CCGC 7 cut(s) 20, 123, 126, 138, 651, 843, 921
AclWI GGATC 2 cut(s) 397, 1022
AcoI YGGCCR 1 cut(s) 652
AcsI RAATTY 1 cut(s) 888
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 252
AfeI AGCGCT 1 cut(s) 602
AfiI CCNNNNNNNGG 1 cut(s) 476
AflII CTTAAG 2 cut(s) 89, 1013
AgsI TTSAA 6 cut(s) 67, 76, 196, 424, 432, 505
AjnI CCWGG 1 cut(s) 369
AjuI GAANNNNNNNTTGG 4 cut(s) 134, 166, 463, 495
AluBI AGCT 7 cut(s) 85, 283, 314, 561, 753, 916, 935
AluI AGCT 7 cut(s) 85, 283, 314, 561, 753, 916, 935
Alw21I GWGCWC 2 cut(s) 563, 918
Alw26I GTCTC 2 cut(s) 226, 959
AlwI GGATC 2 cut(s) 397, 1022
Aor13HI TCCGGA 1 cut(s) 817
Aor51HI AGCGCT 1 cut(s) 602
AoxI GGCC 1 cut(s) 652
ApeKI GCWGC 5 cut(s) 283, 311, 750, 836, 839
ApoI RAATTY 1 cut(s) 888
Asp700I GAANNNNTTC 1 cut(s) 888
AspLEI GCGC 3 cut(s) 34, 603, 865
AspS9I GGNCC 3 cut(s) 241, 276, 823
AsuHPI GGTGA 3 cut(s) 91, 910, 988
AsuII TTCGAA 1 cut(s) 294
AvaII GGWCC 3 cut(s) 241, 276, 823
BanI GGYRCC 2 cut(s) 22, 496
BanII GRGCYC 2 cut(s) 563, 918
BauI CACGAG 1 cut(s) 911
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 2 cut(s) 563, 918
BbvI GCAGC 5 cut(s) 270, 323, 762, 823, 826
BccI CCATC 4 cut(s) 43, 331, 965, 1039
BceAI ACGGC 1 cut(s) 46
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 1 cut(s) 371
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 226, 959
BfaI CTAG 2 cut(s) 806, 878
BfmI CTRYAG 1 cut(s) 660
BfoI RGCGCY 2 cut(s) 35, 604
BfrI CTTAAG 2 cut(s) 89, 1013
BglII AGATCT 1 cut(s) 577
BisI GCNGC 8 cut(s) 126, 284, 312, 652, 751, 837, 840, 843
BlsI GCNGC 8 cut(s) 127, 285, 313, 653, 752, 838, 841, 844
Bme1390I CCNGG 1 cut(s) 371
Bme18I GGWCC 3 cut(s) 241, 276, 823
BmgT120I GGNCC 3 cut(s) 241, 276, 823
BmiI GGNNCC 3 cut(s) 24, 277, 498
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 5 cut(s) 125, 505, 551, 602, 748
BpiI GAAGAC 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 425
BsaJI CCNNGG 3 cut(s) 150, 546, 762
BsaWI WCCGGW 1 cut(s) 817
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 3 cut(s) 525, 624, 897
BseAI TCCGGA 1 cut(s) 817
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 3 cut(s) 150, 546, 762
BseGI GGATG 5 cut(s) 100, 379, 542, 617, 1031
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 3 cut(s) 525, 624, 897
BseNI ACTGG 1 cut(s) 323
BseXI GCAGC 5 cut(s) 270, 323, 762, 823, 826
BseYI CCCAGC 2 cut(s) 999, 1049
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 1 cut(s) 654
BshNI GGYRCC 2 cut(s) 22, 496
BsiHKAI GWGCWC 2 cut(s) 563, 918
BsiSI CCGG 2 cut(s) 818, 1035
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 226, 959
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 1 cut(s) 654
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 563, 918
Bsp13I TCCGGA 1 cut(s) 817
Bsp1407I TGTACA 1 cut(s) 250
Bsp143I GATC 7 cut(s) 172, 389, 415, 577, 641, 802, 1027
BspACI CCGC 7 cut(s) 20, 123, 126, 138, 651, 843, 921
BspANI GGCC 1 cut(s) 654
BspEI TCCGGA 1 cut(s) 817
BspFNI CGCG 1 cut(s) 651
BspLI GGNNCC 3 cut(s) 24, 277, 498
BspPI GGATC 2 cut(s) 397, 1022
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 2 cut(s) 22, 496
BspTI CTTAAG 2 cut(s) 89, 1013
BsrBI CCGCTC 2 cut(s) 845, 923
BsrDI GCAATG 3 cut(s) 525, 624, 897
BsrGI TGTACA 1 cut(s) 250
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 3 cut(s) 150, 546, 762
BssMI GATC 7 cut(s) 172, 389, 415, 577, 641, 802, 1027
BssSI CACGAG 1 cut(s) 911
BssT1I CCWWGG 3 cut(s) 150, 546, 762
Bst2BI CACGAG 1 cut(s) 911
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 2 cut(s) 46, 363
BstAFI CTTAAG 2 cut(s) 89, 1013
BstAPI GCANNNNNTGC 1 cut(s) 1009
BstAUI TGTACA 1 cut(s) 250
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 3 cut(s) 288, 656, 739
BstDEI CTNAG 1 cut(s) 754
BstF5I GGATG 5 cut(s) 100, 379, 542, 617, 1031
BstFNI CGCG 1 cut(s) 651
BstH2I RGCGCY 2 cut(s) 35, 604
BstHHI GCGC 3 cut(s) 34, 603, 865
BstKTI GATC 7 cut(s) 175, 392, 418, 580, 644, 805, 1030
BstMAI GTCTC 2 cut(s) 226, 959
BstMBI GATC 7 cut(s) 172, 389, 415, 577, 641, 802, 1027
BstMWI GCNNNNNNNGC 4 cut(s) 31, 747, 842, 1009
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 1 cut(s) 1012
BstSCI CCNGG 1 cut(s) 369
BstSFI CTRYAG 1 cut(s) 660
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 5 cut(s) 270, 323, 762, 823, 826
BstV2I GAAGAC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 577
BstXI CCANNNNNNTGG 1 cut(s) 631
BstYI RGATCY 1 cut(s) 577
BsuRI GGCC 1 cut(s) 654
BtsCI GGATG 5 cut(s) 100, 379, 542, 617, 1031
BtsIMutI CAGTG 1 cut(s) 981
Cac8I GCNNGC 3 cut(s) 288, 656, 739
CfoI GCGC 3 cut(s) 34, 603, 865
Cfr13I GGNCC 3 cut(s) 241, 276, 823
Csp6I GTAC 1 cut(s) 251
CviAII CATG 3 cut(s) 307, 956, 1009
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 1 cut(s) 754
DpnI GATC 7 cut(s) 174, 391, 417, 579, 643, 804, 1029
DpnII GATC 7 cut(s) 172, 389, 415, 577, 641, 802, 1027
EaeI YGGCCR 1 cut(s) 652
Ecl136II GAGCTC 2 cut(s) 561, 916
Eco130I CCWWGG 3 cut(s) 150, 546, 762
Eco24I GRGCYC 2 cut(s) 563, 918
Eco47I GGWCC 3 cut(s) 241, 276, 823
Eco47III AGCGCT 1 cut(s) 602
Eco53kI GAGCTC 2 cut(s) 561, 916
Eco57I CTGAAG 1 cut(s) 48
EcoICRI GAGCTC 2 cut(s) 561, 916
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 3 cut(s) 150, 546, 762
EcoT38I GRGCYC 2 cut(s) 563, 918
ErhI CCWWGG 3 cut(s) 150, 546, 762
FaeI CATG 3 cut(s) 310, 959, 1012
FaqI GGGAC 1 cut(s) 382
FatI CATG 3 cut(s) 306, 955, 1008
FauI CCCGC 1 cut(s) 131
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 8 cut(s) 126, 284, 312, 652, 751, 837, 840, 843
FokI GGATG 5 cut(s) 107, 386, 529, 624, 1018
FriOI GRGCYC 2 cut(s) 563, 918
Fsp4HI GCNGC 8 cut(s) 126, 284, 312, 652, 751, 837, 840, 843
FspBI CTAG 2 cut(s) 806, 878
GlaI GCGC 3 cut(s) 33, 602, 864
GluI GCNGC 8 cut(s) 126, 284, 312, 652, 751, 837, 840, 843
GsaI CCCAGC 2 cut(s) 1003, 1053
HaeII RGCGCY 2 cut(s) 35, 604
HaeIII GGCC 1 cut(s) 654
HapII CCGG 2 cut(s) 818, 1035
HhaI GCGC 3 cut(s) 34, 603, 865
Hin1II CATG 3 cut(s) 310, 959, 1012
Hin6I GCGC 3 cut(s) 32, 601, 863
HinP1I GCGC 3 cut(s) 32, 601, 863
HinfI GANTC 5 cut(s) 341, 395, 474, 716, 1040
HpaII CCGG 2 cut(s) 818, 1035
HphI GGTGA 3 cut(s) 91, 910, 988
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 5 cut(s) 280, 336, 394, 721, 894
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 6 cut(s) 61, 70, 265, 410, 769, 917
HpyCH4III ACNGT 2 cut(s) 46, 363
HpyCH4V TGCA 6 cut(s) 325, 464, 518, 542, 629, 696
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 747, 842, 1009
HpyF3I CTNAG 1 cut(s) 754
Hsp92II CATG 3 cut(s) 310, 959, 1012
HspAI GCGC 3 cut(s) 32, 601, 863
Kpn2I TCCGGA 1 cut(s) 817
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 7 cut(s) 172, 389, 415, 577, 641, 802, 1027
LmnI GCTCC 1 cut(s) 90
Lsp1109I GCAGC 5 cut(s) 270, 323, 762, 823, 826
LweI GCATC 5 cut(s) 125, 505, 551, 602, 748
MaeI CTAG 2 cut(s) 806, 878
MaeIII GTNAC 4 cut(s) 40, 448, 946, 994
MalI GATC 7 cut(s) 174, 391, 417, 579, 643, 804, 1029
MbiI CCGCTC 2 cut(s) 845, 923
MboI GATC 7 cut(s) 172, 389, 415, 577, 641, 802, 1027
MboII GAAGA 6 cut(s) 199, 314, 524, 563, 587, 896
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 2 cut(s) 563, 918
MluCI AATT 5 cut(s) 329, 419, 433, 831, 888
MlyI GAGTC 2 cut(s) 404, 1049
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 5 cut(s) 366, 752, 809, 814, 952
MroI TCCGGA 1 cut(s) 817
MroXI GAANNNNTTC 1 cut(s) 888
MseI TTAA 3 cut(s) 6, 90, 1014
MslI CAYNNNNRTG 1 cut(s) 854
MspA1I CMGCKG 1 cut(s) 128
MspCI CTTAAG 2 cut(s) 89, 1013
MspI CCGG 2 cut(s) 818, 1035
MspR9I CCNGG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 4 cut(s) 31, 747, 842, 1009
NdeII GATC 7 cut(s) 172, 389, 415, 577, 641, 802, 1027
NlaIII CATG 3 cut(s) 310, 959, 1012
NlaIV GGNNCC 3 cut(s) 24, 277, 498
NmuCI GTSAC 3 cut(s) 448, 946, 994
NspI RCATGY 1 cut(s) 1012
NspV TTCGAA 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 3 cut(s) 341, 474, 716
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 8 cut(s) 127, 285, 313, 653, 752, 838, 841, 844
PleI GAGTC 2 cut(s) 403, 1048
PpsI GAGTC 2 cut(s) 403, 1048
Psp124BI GAGCTC 2 cut(s) 563, 918
Psp6I CCWGG 1 cut(s) 369
PspFI CCCAGC 2 cut(s) 999, 1049
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 3 cut(s) 24, 277, 498
PspPI GGNCC 3 cut(s) 241, 276, 823
PsuI RGATCY 1 cut(s) 577
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 854
SacI GAGCTC 2 cut(s) 563, 918
SaqAI TTAA 3 cut(s) 6, 90, 1014
SatI GCNGC 8 cut(s) 126, 284, 312, 652, 751, 837, 840, 843
Sau3AI GATC 7 cut(s) 172, 389, 415, 577, 641, 802, 1027
Sau96I GGNCC 3 cut(s) 241, 276, 823
SchI GAGTC 2 cut(s) 404, 1049
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 2 cut(s) 563, 918
SfaNI GCATC 5 cut(s) 125, 505, 551, 602, 748
SfcI CTRYAG 1 cut(s) 660
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 3 cut(s) 241, 276, 823
SmiMI CAYNNNNRTG 1 cut(s) 854
SmlI CTYRAG 3 cut(s) 89, 404, 1013
SmoI CTYRAG 3 cut(s) 89, 404, 1013
Sse9I AATT 5 cut(s) 329, 419, 433, 831, 888
SsiI CCGC 7 cut(s) 20, 123, 126, 138, 651, 843, 921
SspMI CTAG 2 cut(s) 806, 878
SstI GAGCTC 2 cut(s) 563, 918
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 3 cut(s) 150, 546, 762
TaaI ACNGT 2 cut(s) 46, 363
TaqI TCGA 5 cut(s) 224, 294, 584, 801, 925
TasI AATT 5 cut(s) 329, 419, 433, 831, 888
TatI WGTACW 1 cut(s) 250
TauI GCSGC 3 cut(s) 128, 654, 845
TfiI GAWTC 3 cut(s) 341, 474, 716
Tru1I TTAA 3 cut(s) 6, 90, 1014
Tru9I TTAA 3 cut(s) 6, 90, 1014
TscAI CASTG 1 cut(s) 988
TseFI GTSAC 3 cut(s) 448, 946, 994
TseI GCWGC 5 cut(s) 283, 311, 750, 836, 839
Tsp45I GTSAC 3 cut(s) 448, 946, 994
TspDTI ATGAA 4 cut(s) 111, 525, 693, 897
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 988
Vha464I CTTAAG 2 cut(s) 89, 1013
VpaK11BI GGWCC 3 cut(s) 241, 276, 823
XapI RAATTY 1 cut(s) 888
XbaI TCTAGA 1 cut(s) 877
XceI RCATGY 1 cut(s) 1012
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 2 cut(s) 806, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.