Rmu_sc0011601.1_g000013

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011601.1
OG0000039
Physical Location & Seq
Reverse (-)
24127 .. 34664
10538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011601.1_g000013.1.cds

Sequence Viewer

Length: 2616 bp
atggcggttgtgggggattttgttgtagggaaagcactcgacgcactgtatgccggtgtggaaaagctgattgccaataatctactctttaagtccctctccaccgacatcaaatctaagctagactctttgagacggatgattcacaagatggtacagcgtaaccagcaatccgattgtccagaggatccagtactaagagacttacaagtactaatggaggaaggcgcaatgctcgtgggtaactgctctgaggttcgtagttggcacatctacaagaagtacaaatacaccaacaaacttctcaagttgaatgaatctcttgagaatcagttagctttattgaatgtgcgtgtagcaggtgttgtagacgagaacaatggtatgctacatgaaatcttagatattgtgaatccaaacaaatctccagaaattgaagatcggtgtgcactacctgaactaccgccacttatagttggattgcatattccattggagaaattgaagacggaattgtttaaggatgaggtatcgaggcttgtactgactggtcccggaggatgtgggaaaactactttggcatcaaagttttgtcaagatcaagacgtcaaagataaattcaagaacaacatcttcttcgtcactgtttctaaaaagcccaatttggagcttattatgaaagtgctatacaaacaaaagggttatgaggtacctactttccagaatggagtttttccagtgaaatggctgcaacaaattgtgaaggaaaaaggtaatgatcctttattgttggtcttggatgatgtttggtctggatcagaatctgttcttcagacgtttgaattcaaaatgtcaaattacaagattttagtgacatcgaggtctgaatttttgggattcggttcttcatatcgtctacaactattagacaatgacaatgcaatgcagctatttcatcatacagcatccttgggagataagagctctcatattccaacacatctttcaaaagagatagtaaagcgctgtaatggatttccactggccattacagtggtgggaagatcactttgcggtaaacctatagaaatgtggcgaagcagagtaattgaatggtcgaaaggttattctattttggattttgagacagaattgcttcttcgcctcaaaactagcttagatgccttagataatgaaatgcctatggttaaggaatgtttcttagacctaggtgtgtttccagaagatgctactatcgaagttacagctctcattgatatgtgggcagagttgtatgatttggacttggggactttatgcattgccaaactctatgaactcaacaatcgcagtctagctaatttgtcacgatttagaggtattgggttgatagttgaggaggatggagactatagtgactacactgttaaacaacatgatttgcttagagaattggctatctaccattcgaaacgagatccgatggagcatagagaaagagtaattatagaaatatctggaaacaatcttcccaagtggtggagtgaacagaagtatcaacccatcaaggctcgtcttgtatcaatctcaactgatggagaattctctgtgaaatggcccgacatgcaactacctgaagcacaggttctagtgttgaattttcagacgcaatataactttgccttgcccgaatgtgtggagaaaatggaaaagctcaagatgctcgttctcataaattctagcttttataataacatagataattttcaacttctggattccttatcaaatctaaggtgtataagattagacggcctcaatctttctttcataaccgagagcccggtacagttgaagactctacacaagttatatttggtcaacggtgaatctctcggcaacggtcctgtcaaattatcacatgtatttccaaatctaaaggaaatgttcattgattggttcatcaaattggaggaattgcctgcagagctctgcgagctgattgaattaacaaagctcacaatcagcagttgtaatgtgctttctagcttgcctgaagcgattggaaatctggttaatttagaagtgttgaggcttcggtacaatgtagagctttcagaggttgcagactcgattggaaatctcaacaaattaaaaaaatttgagatttctgcttgccataaaattgagaaattgcctgaacacataggtgagctgaagtgtttaacaaatctccgcatcatgtggtgcgatttgctatctgccttgcctgaagcgattggaaatttggtcaatctagaagtattgagtctaaggttctgtgacaggttgtcagagttgccagagtcgattagaaatctcaaaaagttaaactttcttgacattcatgcttgcagcataatcaaggagttgcctgaacagattggtgaattgaagagtttaagaatgctgcaaatgagttgttgccccgaattgagaaacctgcctcaatcagtttcagatcttgagcagttagaggaagtgatatgcgatgagtgggacgaaacacatctatggacacccttgttacccactctcaaaaaccttcgcatcgtggtgtataaggaggaagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

871

Amino Acids

99.47

Weight (kDa)

5.4

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1749
AarI CACCTGC 1 cut(s) 350
AasI GACNNNNNNGTC 1 cut(s) 880
AatII GACGTC 1 cut(s) 609
Acc36I ACCTGC 2 cut(s) 350, 2490
Acc65I GGTACC 1 cut(s) 709
AccB1I GGYRCC 1 cut(s) 709
AccB7I CCANNNNNTGG 1 cut(s) 1539
AccI GTMKAC 2 cut(s) 369, 916
AciI CCGC 4 cut(s) 5, 464, 1074, 2236
AclWI GGATC 5 cut(s) 182, 195, 773, 823, 1472
AcoI YGGCCR 1 cut(s) 1044
AcsI RAATTY 8 cut(s) 617, 842, 887, 1601, 1657, 1735, 2159, 2284
AcuI CTGAAG 5 cut(s) 815, 1656, 2076, 2237, 2292
AcyI GRCGYC 1 cut(s) 606
AfaI GTAC 8 cut(s) 156, 195, 213, 284, 543, 711, 1848, 2102
AfeI AGCGCT 1 cut(s) 1025
AfiI CCNNNNNNNGG 1 cut(s) 1539
AflIII ACRYGT 1 cut(s) 1921
AhdI GACNNNNNGTC 1 cut(s) 2329
AjuI GAANNNNNNNTTGG 4 cut(s) 560, 592, 988, 1020
AleI CACNNNNGTG 1 cut(s) 2208
Alw21I GWGCWC 3 cut(s) 451, 986, 1992
Alw26I GTCTC 4 cut(s) 127, 195, 1139, 1401
Alw44I GTGCAC 1 cut(s) 447
AlwI GGATC 5 cut(s) 182, 195, 773, 823, 1472
AlwNI CAGNNNCTG 1 cut(s) 824
Aor51HI AGCGCT 1 cut(s) 1025
AoxI GGCC 3 cut(s) 1044, 1616, 1813
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 4 cut(s) 748, 946, 2394, 2449
ApoI RAATTY 8 cut(s) 617, 842, 887, 1601, 1657, 1735, 2159, 2284
Asp700I GAANNNNTTC 2 cut(s) 825, 1155
Asp718I GGTACC 1 cut(s) 709
AspA2I CCTAGG 1 cut(s) 1228
AspLEI GCGC 2 cut(s) 230, 1026
AspS9I GGNCC 3 cut(s) 551, 1617, 1904
AsuC2I CCSGG 2 cut(s) 555, 1844
AsuHPI GGTGA 3 cut(s) 1898, 2222, 2438
AsuII TTCGAA 1 cut(s) 1469
AvaII GGWCC 2 cut(s) 551, 1904
AvrII CCTAGG 1 cut(s) 1228
BaeGI GKGCMC 1 cut(s) 451
BaeI ACNNNNGTAYC 2 cut(s) 1538, 1571
BalI TGGCCA 1 cut(s) 1046
BamHI GGATCC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 709
BanII GRGCYC 3 cut(s) 986, 1844, 1992
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BauI CACGAG 1 cut(s) 236
BbsI GAAGAC 2 cut(s) 512, 1862
Bbv12I GWGCWC 3 cut(s) 451, 986, 1992
BbvI GCAGC 4 cut(s) 735, 958, 2406, 2436
BccI CCATC 5 cut(s) 145, 1397, 1477, 1571, 1589
BceAI ACGGC 1 cut(s) 1828
BcnI CCSGG 2 cut(s) 555, 1844
BcoDI GTCTC 4 cut(s) 127, 195, 1139, 1401
BfaI CTAG 8 cut(s) 122, 1173, 1229, 1355, 1649, 1740, 2046, 2297
BfmI CTRYAG 3 cut(s) 1083, 1411, 1983
BfoI RGCGCY 1 cut(s) 1027
BfuAI ACCTGC 2 cut(s) 350, 2490
BglII AGATCT 1 cut(s) 2500
BisI GCNGC 4 cut(s) 749, 947, 2395, 2450
BlnI CCTAGG 1 cut(s) 1228
BlsI GCNGC 4 cut(s) 750, 948, 2396, 2451
BmcAI AGTACT 2 cut(s) 195, 213
Bme1390I CCNGG 2 cut(s) 555, 1844
Bme18I GGWCC 2 cut(s) 551, 1904
BmeRI GACNNNNNGTC 1 cut(s) 2329
BmgT120I GGNCC 3 cut(s) 551, 1617, 1904
BmiI GGNNCC 3 cut(s) 189, 553, 711
BmrFI CCNGG 2 cut(s) 555, 1844
BmsI GCATC 7 cut(s) 590, 974, 1171, 1237, 1710, 2247, 2598
BpiI GAAGAC 2 cut(s) 512, 1862
BpmI CTGGAG 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 1469
BpuEI CTTGAG 4 cut(s) 290, 344, 1700, 2525
BpuMI CCSGG 2 cut(s) 555, 1844
BsaBI GATNNNNATC 1 cut(s) 820
BsaHI GRCGYC 1 cut(s) 606
BsaJI CCNNGG 2 cut(s) 969, 1228
Bsc4I CCNNNNNNNGG 1 cut(s) 1539
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 4 cut(s) 191, 553, 737, 1047
Bse3DI GCAATG 3 cut(s) 237, 948, 1320
Bse8I GATNNNNATC 1 cut(s) 820
BseDI CCNNGG 2 cut(s) 969, 1228
BseGI GGATG 6 cut(s) 144, 529, 566, 805, 965, 1408
BseJI GATNNNNATC 1 cut(s) 820
BseLI CCNNNNNNNGG 1 cut(s) 1539
BseMI GCAATG 3 cut(s) 237, 948, 1320
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 4 cut(s) 191, 553, 737, 1047
BseRI GAGGAG 1 cut(s) 1412
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 4 cut(s) 735, 958, 2406, 2436
BshFI GGCC 3 cut(s) 1046, 1618, 1815
BshNI GGYRCC 1 cut(s) 709
BsiHKAI GWGCWC 3 cut(s) 451, 986, 1992
BsiSI CCGG 3 cut(s) 54, 555, 1844
BslFI GGGAC 4 cut(s) 79, 537, 1324, 2552
BslI CCNNNNNNNGG 1 cut(s) 1539
BsmAI GTCTC 4 cut(s) 127, 195, 1139, 1401
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 4 cut(s) 79, 537, 1324, 2552
BsmI GAATGC 1 cut(s) 2451
BsnI GGCC 3 cut(s) 1046, 1618, 1815
Bsp119I TTCGAA 1 cut(s) 1469
Bsp1286I GDGCHC 4 cut(s) 451, 986, 1844, 1992
Bsp143I GATC 8 cut(s) 187, 439, 598, 778, 815, 1064, 1477, 2500
BspACI CCGC 4 cut(s) 5, 464, 1074, 2236
BspANI GGCC 3 cut(s) 1046, 1618, 1815
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 3 cut(s) 189, 553, 711
BspMAI CTGCAG 1 cut(s) 1987
BspMI ACCTGC 2 cut(s) 350, 2490
BspPI GGATC 5 cut(s) 182, 195, 773, 823, 1472
BspT104I TTCGAA 1 cut(s) 1469
BspT107I GGYRCC 1 cut(s) 709
BsrDI GCAATG 3 cut(s) 237, 948, 1320
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 4 cut(s) 191, 553, 737, 1047
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 969, 1228
BssMI GATC 8 cut(s) 187, 439, 598, 778, 815, 1064, 1477, 2500
BssNI GRCGYC 1 cut(s) 606
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 2 cut(s) 969, 1228
Bst2BI CACGAG 1 cut(s) 236
Bst4CI ACNGT 7 cut(s) 48, 646, 1054, 1426, 1851, 1886, 1904
Bst6I CTCTTC 1 cut(s) 2429
BstACI GRCGYC 1 cut(s) 606
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 1469
BstC8I GCNNGC 5 cut(s) 1983, 1997, 2051, 2176, 2392
BstF5I GGATG 6 cut(s) 144, 529, 566, 805, 965, 1408
BstH2I RGCGCY 1 cut(s) 1027
BstHHI GCGC 2 cut(s) 230, 1026
BstKTI GATC 8 cut(s) 190, 442, 601, 781, 818, 1067, 1480, 2503
BstMAI GTCTC 4 cut(s) 127, 195, 1139, 1401
BstMBI GATC 8 cut(s) 187, 439, 598, 778, 815, 1064, 1477, 2500
BstMWI GCNNNNNNNGC 7 cut(s) 41, 50, 166, 1624, 1720, 1987, 1996
BstNSI RCATGY 2 cut(s) 1627, 1925
BstSCI CCNGG 2 cut(s) 553, 1842
BstSFI CTRYAG 3 cut(s) 1083, 1411, 1983
BstSLI GKGCMC 1 cut(s) 451
BstV1I GCAGC 4 cut(s) 735, 958, 2406, 2436
BstV2I GAAGAC 2 cut(s) 512, 1862
BstX2I RGATCY 3 cut(s) 187, 1477, 2500
BstXI CCANNNNNNTGG 2 cut(s) 744, 1054
BstYI RGATCY 3 cut(s) 187, 1477, 2500
BsuRI GGCC 3 cut(s) 1046, 1618, 1815
BtgZI GCGATG 1 cut(s) 2544
BtsCI GGATG 6 cut(s) 144, 529, 566, 805, 965, 1408
BtsIMutI CAGTG 6 cut(s) 44, 642, 744, 1040, 1059, 1422
BveI ACCTGC 2 cut(s) 350, 2490
Cac8I GCNNGC 5 cut(s) 1983, 1997, 2051, 2176, 2392
CaiI CAGNNNCTG 1 cut(s) 824
CfoI GCGC 2 cut(s) 230, 1026
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 3 cut(s) 551, 1617, 1904
CseI GACGC 2 cut(s) 50, 1675
Csp6I GTAC 8 cut(s) 155, 194, 212, 283, 542, 710, 1847, 2101
CspCI CAANNNNNGTGG 2 cut(s) 219, 254
CviAII CATG 6 cut(s) 392, 1436, 1624, 1922, 2242, 2387
CviQI GTAC 8 cut(s) 155, 194, 212, 283, 542, 710, 1847, 2101
DpnI GATC 8 cut(s) 189, 441, 600, 780, 817, 1066, 1479, 2502
DpnII GATC 8 cut(s) 187, 439, 598, 778, 815, 1064, 1477, 2500
DrdI GACNNNNNNGTC 1 cut(s) 880
DriI GACNNNNNGTC 1 cut(s) 2329
DseDI GACNNNNNNGTC 1 cut(s) 880
EaeI YGGCCR 1 cut(s) 1044
Eam1104I CTCTTC 1 cut(s) 2429
Eam1105I GACNNNNNGTC 1 cut(s) 2329
EarI CTCTTC 1 cut(s) 2429
Ecl136II GAGCTC 2 cut(s) 984, 1990
Eco130I CCWWGG 2 cut(s) 969, 1228
Eco24I GRGCYC 3 cut(s) 986, 1844, 1992
Eco47I GGWCC 2 cut(s) 551, 1904
Eco47III AGCGCT 1 cut(s) 1025
Eco53kI GAGCTC 2 cut(s) 984, 1990
Eco57I CTGAAG 5 cut(s) 815, 1656, 2076, 2237, 2292
EcoICRI GAGCTC 2 cut(s) 984, 1990
EcoRI GAATTC 2 cut(s) 842, 1601
EcoT14I CCWWGG 2 cut(s) 969, 1228
EcoT22I ATGCAT 1 cut(s) 1322
EcoT38I GRGCYC 3 cut(s) 986, 1844, 1992
ErhI CCWWGG 2 cut(s) 969, 1228
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 6 cut(s) 395, 1439, 1627, 1925, 2245, 2390
FalI AAGNNNNNCTT 2 cut(s) 2357, 2389
FaqI GGGAC 4 cut(s) 79, 537, 1324, 2552
FatI CATG 6 cut(s) 391, 1435, 1623, 1921, 2241, 2386
FblI GTMKAC 2 cut(s) 369, 916
Fnu4HI GCNGC 4 cut(s) 749, 947, 2395, 2450
FokI GGATG 6 cut(s) 151, 536, 573, 812, 952, 1415
FriOI GRGCYC 3 cut(s) 986, 1844, 1992
Fsp4HI GCNGC 4 cut(s) 749, 947, 2395, 2450
FspBI CTAG 8 cut(s) 122, 1173, 1229, 1355, 1649, 1740, 2046, 2297
GlaI GCGC 2 cut(s) 229, 1025
GluI GCNGC 4 cut(s) 749, 947, 2395, 2450
GsuI CTGGAG 1 cut(s) 411
HaeII RGCGCY 1 cut(s) 1027
HaeIII GGCC 3 cut(s) 1046, 1618, 1815
HapII CCGG 3 cut(s) 54, 555, 1844
HgaI GACGC 2 cut(s) 50, 1675
HhaI GCGC 2 cut(s) 230, 1026
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 6 cut(s) 395, 1439, 1627, 1925, 2245, 2390
Hin6I GCGC 2 cut(s) 228, 1024
HinP1I GCGC 2 cut(s) 228, 1024
HincII GTYRAC 1 cut(s) 1882
HindII GTYRAC 1 cut(s) 1882
HpaII CCGG 3 cut(s) 54, 555, 1844
HphI GGTGA 3 cut(s) 1898, 2222, 2438
Hpy166II GTNNAC 6 cut(s) 370, 449, 917, 1079, 1547, 1882
Hpy8I GTNNAC 6 cut(s) 370, 449, 917, 1079, 1547, 1882
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 218, 757, 2594
HpyCH4III ACNGT 7 cut(s) 48, 646, 1054, 1426, 1851, 1886, 1904
HpyCH4IV ACGT 2 cut(s) 606, 836
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 50, 166, 1624, 1720, 1987, 1996
HpySE526I ACGT 2 cut(s) 606, 836
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 6 cut(s) 395, 1439, 1627, 1925, 2245, 2390
HspAI GCGC 2 cut(s) 228, 1024
KpnI GGTACC 1 cut(s) 713
Kzo9I GATC 8 cut(s) 187, 439, 598, 778, 815, 1064, 1477, 2500
LmnI GCTCC 2 cut(s) 667, 1486
Lsp1109I GCAGC 4 cut(s) 735, 958, 2406, 2436
LweI GCATC 7 cut(s) 590, 974, 1171, 1237, 1710, 2247, 2598
MaeI CTAG 8 cut(s) 122, 1173, 1229, 1355, 1649, 1740, 2046, 2297
MaeII ACGT 2 cut(s) 606, 836
MaeIII GTNAC 9 cut(s) 161, 242, 640, 871, 1261, 1365, 1415, 2321, 2565
MalI GATC 8 cut(s) 189, 441, 600, 780, 817, 1066, 1479, 2502
MboI GATC 8 cut(s) 187, 439, 598, 778, 815, 1064, 1477, 2500
MflI RGATCY 3 cut(s) 187, 1477, 2500
MhlI GDGCHC 4 cut(s) 451, 986, 1844, 1992
MlsI TGGCCA 1 cut(s) 1046
MluNI TGGCCA 1 cut(s) 1046
MlyI GAGTC 5 cut(s) 119, 1852, 2123, 2317, 2354
MmeI TCCRAC 2 cut(s) 457, 1019
Mox20I TGGCCA 1 cut(s) 1046
Mph1103I ATGCAT 1 cut(s) 1322
MroXI GAANNNNTTC 2 cut(s) 825, 1155
MscI TGGCCA 1 cut(s) 1046
MslI CAYNNNNRTG 5 cut(s) 1052, 1277, 2208, 2551, 2594
Msp20I TGGCCA 1 cut(s) 1046
MspI CCGG 3 cut(s) 54, 555, 1844
MspR9I CCNGG 2 cut(s) 555, 1844
Mva1269I GAATGC 1 cut(s) 2451
MwoI GCNNNNNNNGC 7 cut(s) 41, 50, 166, 1624, 1720, 1987, 1996
NciI CCSGG 2 cut(s) 555, 1844
NdeII GATC 8 cut(s) 187, 439, 598, 778, 815, 1064, 1477, 2500
NlaIII CATG 6 cut(s) 395, 1439, 1627, 1925, 2245, 2390
NlaIV GGNNCC 3 cut(s) 189, 553, 711
NmeAIII GCCGAG 1 cut(s) 1875
NmuCI GTSAC 5 cut(s) 640, 871, 1365, 1415, 2321
NsiI ATGCAT 1 cut(s) 1322
NspI RCATGY 2 cut(s) 1627, 1925
NspV TTCGAA 1 cut(s) 1469
OliI CACNNNNGTG 1 cut(s) 2208
PaqCI CACCTGC 1 cut(s) 350
PciI ACATGT 1 cut(s) 1921
PctI GAATGC 1 cut(s) 2451
PdmI GAANNNNTTC 2 cut(s) 825, 1155
PfeI GAWTC 8 cut(s) 142, 317, 328, 412, 821, 897, 1778, 1889
PflMI CCANNNNNTGG 1 cut(s) 1539
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 4 cut(s) 750, 948, 2396, 2451
PleI GAGTC 5 cut(s) 119, 1852, 2123, 2316, 2353
PpsI GAGTC 5 cut(s) 119, 1852, 2123, 2316, 2353
PscI ACATGT 1 cut(s) 1921
PsiI TTATAA 1 cut(s) 1749
Psp124BI GAGCTC 2 cut(s) 986, 1992
PspN4I GGNNCC 3 cut(s) 189, 553, 711
PspPI GGNCC 3 cut(s) 551, 1617, 1904
PstI CTGCAG 1 cut(s) 1987
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 3 cut(s) 187, 1477, 2500
RsaI GTAC 8 cut(s) 156, 195, 213, 284, 543, 711, 1848, 2102
RsaNI GTAC 8 cut(s) 155, 194, 212, 283, 542, 710, 1847, 2101
RseI CAYNNNNRTG 5 cut(s) 1052, 1277, 2208, 2551, 2594
SacI GAGCTC 2 cut(s) 986, 1992
SatI GCNGC 4 cut(s) 749, 947, 2395, 2450
Sau3AI GATC 8 cut(s) 187, 439, 598, 778, 815, 1064, 1477, 2500
Sau96I GGNCC 3 cut(s) 551, 1617, 1904
ScaI AGTACT 2 cut(s) 195, 213
SchI GAGTC 5 cut(s) 119, 1852, 2123, 2317, 2354
ScrFI CCNGG 2 cut(s) 555, 1844
SduI GDGCHC 4 cut(s) 451, 986, 1844, 1992
SfaNI GCATC 7 cut(s) 590, 974, 1171, 1237, 1710, 2247, 2598
SfcI CTRYAG 3 cut(s) 1083, 1411, 1983
SfuI TTCGAA 1 cut(s) 1469
SinI GGWCC 2 cut(s) 551, 1904
SmiMI CAYNNNNRTG 5 cut(s) 1052, 1277, 2208, 2551, 2594
SmlI CTYRAG 4 cut(s) 305, 323, 1715, 2504
SmoI CTYRAG 4 cut(s) 305, 323, 1715, 2504
SsiI CCGC 4 cut(s) 5, 464, 1074, 2236
SspMI CTAG 8 cut(s) 122, 1173, 1229, 1355, 1649, 1740, 2046, 2297
SstI GAGCTC 2 cut(s) 986, 1992
StyD4I CCNGG 2 cut(s) 553, 1842
StyI CCWWGG 2 cut(s) 969, 1228
TaaI ACNGT 7 cut(s) 48, 646, 1054, 1426, 1851, 1886, 1904
TaiI ACGT 2 cut(s) 609, 839
TaqI TCGA 8 cut(s) 39, 533, 878, 1118, 1257, 1469, 2132, 2348
TatI WGTACW 4 cut(s) 193, 211, 282, 541
TfiI GAWTC 8 cut(s) 142, 317, 328, 412, 821, 897, 1778, 1889
TscAI CASTG 6 cut(s) 51, 649, 744, 1047, 1059, 1429
TseFI GTSAC 5 cut(s) 640, 871, 1365, 1415, 2321
TseI GCWGC 4 cut(s) 748, 946, 2394, 2449
Tsp45I GTSAC 5 cut(s) 640, 871, 1365, 1415, 2321
TspGWI ACGGA 2 cut(s) 151, 524
TspRI CASTG 6 cut(s) 51, 649, 744, 1047, 1059, 1429
Van91I CCANNNNNTGG 1 cut(s) 1539
VneI GTGCAC 1 cut(s) 447
VpaK11BI GGWCC 2 cut(s) 551, 1904
XapI RAATTY 8 cut(s) 617, 842, 887, 1601, 1657, 1735, 2159, 2284
XbaI TCTAGA 1 cut(s) 2296
XceI RCATGY 2 cut(s) 1627, 1925
XcmI CCANNNNNNNNNTGG 1 cut(s) 1054
XmaJI CCTAGG 1 cut(s) 1228
XmiI GTMKAC 2 cut(s) 369, 916
XmnI GAANNNNTTC 2 cut(s) 825, 1155
XspI CTAG 8 cut(s) 122, 1173, 1229, 1355, 1649, 1740, 2046, 2297
ZraI GACGTC 1 cut(s) 607
ZrmI AGTACT 2 cut(s) 195, 213
Zsp2I ATGCAT 1 cut(s) 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.