Rmu_sc0002316.1_g000012

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002316.1
OG0000039
Physical Location & Seq
Forward (+)
54197 .. 58942
4746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002316.1_g000012.1.cds

Sequence Viewer

Length: 3438 bp
atggcactatcactggtactggatttaatcggaggagaagtttttcagctgttctctggaagtgttactagagcggtggaccggaaagcggcatttagagaccttctccaagatattaaatacacactcaagtctctaagaagacaggccagagtcattcagcagatacaacagtataatctggacttgagtctgtcaaacaatgaaataatcgatattgtaacacaaatgaccaagggcagagaactaattgacagcttgtctggtattaaatttcgtttgtggaacttctgctgcacaaatgattgcgctgagcaacttaaagaattgaatagggctcttgaaagtctgtttgacaccctgcagttggagcaagtgagggatgccaaggagaccttgaaattggcaaggcaaaaccacaaagatcttaagaaaatgaaggttatgttggagaagatactgcagatgattgacgatcctgaagtgaagggtctactgaggaagttagtggaccagagttcaggggattcgatggatgatgcctcgacctcaaccccaacctcaaactcagcctcaggaagtaatacagaagatgaagggaatggcgtggcacaagcatcatcatcaggactagtgggagcagcttttggtttgttaattgatgctgttatagaagtgaaggtgagcactaagatgtttagacccctcctcagacgtctcaaatccaccctagactgcttgaggccattcattgaagagatggcaggagataagaagctattggatctcccaaaggagaagctagaaaatcttagaatacaaatggagaatggtgtagagctcgttcgcaagtgctcaagtgttcgtcgatggaccagcaacaaaaaggacaaatacaccaaccaagtatttgaattggatgaacgtcttcaagggcacttaagtatactgataatggaggtagcaagggatgtgagggtgacctcggatttgataaggaatatacagaaggtgatcaatagaatcgaagggagtgactttcaaggttcatgtgacataactgaacctcccatccctccggttgagttagaagtattgaacatgcagaaaacaagtaatgtgaaggagacactggtttcagaggtcaatataactgaagggagtggtgtggtacaaaatcgacttgaatttaaaggttcttgtgatgtacttggaccttcatcccctacagttggattggatgaatccaagcatggaagaaaggatttgatcaaggagacattgcagagagaaagtgtatttcccaagagaccgggccagcctgagtgcctgttttacatggggacaggtgattgtaagttcggtgtagattgtaggtatcatcatccagactgtgttttcagtccaacaggccttcctctacaacctgaaacaatgccaaacttttcagaactgtccaatatgagtcctcttacagttggattggacgtgcatttgaaagaaatgaagagaaagcttctcaatcatggggagtcatcaattcttgtgctgactgggcccgctggatgtggaaaatccacattggcaaaagctttttgtcaagatgaagaagttaaagataaattcaaggacaatatcttctttgttacggtttcgaagaagctgagcgtagacctcattgcactgcaaatactacgtcaactcaaggatgaggtacctcaagttgaaaaccaagtcactgcagttgagtggctgggaaaatttctgaaagaagcaggacaaaatcctttactgttggtcctggatgatgtttggcatgtgtcagaattccttgataacaacaatgaattgaaaatagaaaatctcaagattttggtgacatcaagatctgaacttcgaggatttggttccccatattatataaatgcattgagtgaagaagaggcaatgactctaattcgacgttcagcattcctggaagataggagctcttatgttccagaagatatcctgagaaagatagtaaagcactgtaagggaaacgcacttgcccttacagtcatcggaagatcactgtgcaggatgccaatagatatctggcaaaaaagaatagaggaactgttgaaagattcttctatttctaactgtgagagtgatctgctttcttgcctcaaaatcagttatgatgccttggctgaaaattctgttctgaaggagtgtttcttggacctttctctatttcctgaataccaaagagtccctgctgatgccctcactgatatgtgggcagagttatatggactaggtgaaaatattctacccattatgaacctccaagagctcactacccggggtctggctaaacttgtaggcacaaggaaggagaaagtggaggtggatggctactacagtacactctgttttaacatgcacgatattataagagagctggcaatccatctgactagtcagaaaccgatagaacagagaaacagactgcatatagaaattcttggaggcaagcttcctaactggatcaatcatcttctagaacagaagtatcagcctatgaaggctcgcctagtatcgatctcaactgacgaagtattttcacaaaaatggcacaacatgcaactaccagaagcacaggttctagttctgaattttcaaacagagaattatgcattacctgaatttgtgcaaaacatgggaaatttgaaggttctaatagtcacaagttgtggtaccttgcctgctttctggcctattggtttcttacctgctcaattgagtaattttcaactactcagttcattaccaaatctgagaacaatcagactagagggcatttcaatttcttccataagcatgcactccatacaattgaagagcctgcaaaagatatctctgttcaactgtcgcattggtcaaactttcagcaacacttccatccaactttcagatgcatttccgaatctggtggaaacaaatattgaccactgcaatgatttggtggcattgcctggcatctgtgatcttgttaatctaaagaagctaagtctcatccgctgtcattatctatctgctttgcctccaaagatcggaaagttgtccaaattagaagttttaaggctgaagtcatgcacagtcttagagatgttgccaggatcgattgtgaagctcaataagttagtatttcttgacctatcttattgcaaacgccttaaggagcttcctgatgtcattggactgagaaatttgaaaacaatcgacatgagacagtgctcaagactgcaaatgctgccaccctcttttttgtatcttaagcagttacaggaagtgatatgcgatgaagagacagagaagttatggaaacccttgttgccccgcctcaaaaacctgcgcattaagtttaggtttcccgagattcatttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

1145

Amino Acids

129.61

Weight (kDa)

7.0

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2441
AatII GACGTC 1 cut(s) 718
Acc16I TGCGCA 1 cut(s) 3404
Acc36I ACCTGC 2 cut(s) 2788, 3408
Acc65I GGTACC 2 cut(s) 1714, 2744
AccB1I GGYRCC 2 cut(s) 1714, 2744
AccBSI CCGCTC 1 cut(s) 74
AccI GTMKAC 3 cut(s) 493, 946, 1671
AciI CCGC 5 cut(s) 74, 89, 1560, 3067, 3388
AclWI GGATC 4 cut(s) 470, 792, 2543, 3175
AcuI CTGAAG 4 cut(s) 501, 1176, 2231, 3155
AcyI GRCGYC 1 cut(s) 715
AfaI GTAC 6 cut(s) 18, 1173, 1209, 1716, 2413, 2746
AfiI CCNNNNNNNGG 5 cut(s) 88, 367, 1232, 2356, 3101
AflII CTTAAG 4 cut(s) 428, 940, 3224, 3323
AhdI GACNNNNNGTC 1 cut(s) 259
AhlI ACTAGT 2 cut(s) 631, 2465
AjiI CACGTC 1 cut(s) 1489
AjnI CCWGG 4 cut(s) 1800, 1974, 3022, 3163
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AloI GAACNNNNNNTCC 2 cut(s) 1056, 1088
Alw21I GWGCWC 6 cut(s) 689, 843, 857, 1991, 2343, 3287
AlwI GGATC 4 cut(s) 470, 792, 2543, 3175
Ama87I CYCGRG 2 cut(s) 2349, 3422
AoxI GGCC 6 cut(s) 147, 743, 1315, 1411, 1556, 2762
ApaI GGGCCC 1 cut(s) 1560
ApeKI GCWGC 3 cut(s) 294, 641, 3301
ArsI GACNNNNNNTTYG 4 cut(s) 973, 1005, 1681, 1713
Asp700I GAANNNNTTC 3 cut(s) 42, 927, 2313
Asp718I GGTACC 2 cut(s) 1714, 2744
AspLEI GCGC 2 cut(s) 311, 3405
AspS9I GGNCC 9 cut(s) 79, 511, 873, 1214, 1315, 1556, 1557, 1798, 2227
AsuC2I CCSGG 3 cut(s) 1314, 2350, 2351
AsuHPI GGTGA 6 cut(s) 694, 991, 1024, 1361, 1888, 2318
AsuII TTCGAA 1 cut(s) 1655
AvaI CYCGRG 2 cut(s) 2349, 3422
AvaII GGWCC 6 cut(s) 79, 511, 873, 1214, 1798, 2227
AxyI CCTNAGG 1 cut(s) 574
BaeGI GKGCMC 2 cut(s) 939, 1560
BaeI ACNNNNGTAYC 4 cut(s) 158, 191, 2543, 2576
BanI GGYRCC 2 cut(s) 1714, 2744
BanII GRGCYC 5 cut(s) 340, 843, 1560, 1991, 2343
BbsI GAAGAC 2 cut(s) 148, 920
Bbv12I GWGCWC 6 cut(s) 689, 843, 857, 1991, 2343, 3287
BbvI GCAGC 3 cut(s) 281, 653, 3288
BccI CCATC 7 cut(s) 526, 754, 864, 1079, 2393, 2466, 2957
BciT130I CCWGG 4 cut(s) 1802, 1976, 3024, 3165
BclI TGATCA 2 cut(s) 1014, 1269
BcnI CCSGG 3 cut(s) 1314, 2350, 2351
BcuI ACTAGT 2 cut(s) 631, 2465
BfmI CTRYAG 5 cut(s) 362, 461, 1227, 1740, 2407
BfrI CTTAAG 4 cut(s) 428, 940, 3224, 3323
BfuAI ACCTGC 2 cut(s) 2788, 3408
BglII AGATCT 2 cut(s) 424, 1886
BisI GCNGC 4 cut(s) 90, 295, 642, 3302
BlpI GCTNAGC 2 cut(s) 312, 1664
BlsI GCNGC 4 cut(s) 91, 296, 643, 3303
Bme1390I CCNGG 7 cut(s) 1314, 1802, 1976, 2350, 2351, 3024, 3165
Bme18I GGWCC 6 cut(s) 79, 511, 873, 1214, 1798, 2227
BmeRI GACNNNNNGTC 1 cut(s) 259
BmeT110I CYCGRG 2 cut(s) 2349, 3422
BmgBI CACGTC 1 cut(s) 1489
BmgT120I GGNCC 9 cut(s) 79, 511, 873, 1214, 1315, 1556, 1557, 1798, 2227
BmiI GGNNCC 4 cut(s) 1558, 1716, 1909, 2746
BmrFI CCNGG 7 cut(s) 1314, 1802, 1976, 2350, 2351, 3024, 3165
BmrI ACTGGG 1 cut(s) 1563
BmsI GCATC 9 cut(s) 373, 529, 626, 652, 2073, 2176, 2257, 2953, 3036
BmuI ACTGGG 1 cut(s) 1563
BoxI GACNNNNGTC 1 cut(s) 189
BpiI GAAGAC 2 cut(s) 148, 920
BplI GAGNNNNNCTC 2 cut(s) 90, 122
Bpu1102I GCTNAGC 2 cut(s) 312, 1664
Bpu14I TTCGAA 1 cut(s) 1655
BpuEI CTTGAG 8 cut(s) 113, 208, 760, 841, 1688, 1704, 1850, 3271
BpuMI CCSGG 3 cut(s) 1314, 2350, 2351
Bsa29I ATCGAT 3 cut(s) 213, 2588, 3170
BsaHI GRCGYC 1 cut(s) 715
BsaI GGTCTC 3 cut(s) 93, 386, 1303
BsaJI CCNNGG 6 cut(s) 234, 387, 984, 2190, 2349, 2350
BsaWI WCCGGW 2 cut(s) 81, 1078
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 1051, 1081
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 367, 1232, 2356, 3101
Bse1I ACTGG 5 cut(s) 18, 24, 1137, 1558, 2537
Bse21I CCTNAGG 1 cut(s) 574
Bse3DI GCAATG 5 cut(s) 1280, 1677, 1953, 3010, 3017
BseBI CCWGG 4 cut(s) 1802, 1976, 3024, 3165
BseCI ATCGAT 3 cut(s) 213, 2588, 3170
BseDI CCNNGG 6 cut(s) 234, 387, 984, 2190, 2349, 2350
BseLI CCNNNNNNNGG 5 cut(s) 88, 367, 1232, 2356, 3101
BseMI GCAATG 5 cut(s) 1280, 1677, 1953, 3010, 3017
BseNI ACTGG 5 cut(s) 18, 24, 1137, 1558, 2537
BseRI GAGGAG 2 cut(s) 48, 698
BseSI GKGCMC 2 cut(s) 939, 1560
BseXI GCAGC 3 cut(s) 281, 653, 3288
BseYI CCCAGC 1 cut(s) 1753
BsgI GTGCAG 2 cut(s) 280, 2098
BshFI GGCC 6 cut(s) 149, 745, 1317, 1413, 1558, 2764
BshNI GGYRCC 2 cut(s) 1714, 2744
BshVI ATCGAT 3 cut(s) 213, 2588, 3170
BsiHKAI GWGCWC 6 cut(s) 689, 843, 857, 1991, 2343, 3287
BsiHKCI CYCGRG 2 cut(s) 2349, 3422
BsiSI CCGG 4 cut(s) 82, 1079, 1313, 2350
BslFI GGGAC 2 cut(s) 1357, 2243
BslI CCNNNNNNNGG 5 cut(s) 88, 367, 1232, 2356, 3101
BsmBI CGTCTC 1 cut(s) 722
BsmFI GGGAC 2 cut(s) 1357, 2243
BsmI GAATGC 1 cut(s) 1970
BsnI GGCC 6 cut(s) 149, 745, 1317, 1413, 1558, 2764
Bso31I GGTCTC 3 cut(s) 93, 386, 1303
BsoBI CYCGRG 2 cut(s) 2349, 3422
Bsp119I TTCGAA 1 cut(s) 1655
Bsp120I GGGCCC 1 cut(s) 1556
Bsp1286I GDGCHC 9 cut(s) 340, 689, 843, 857, 939, 1560, 1991, 2343, 3287
Bsp1720I GCTNAGC 2 cut(s) 312, 1664
BspACI CCGC 5 cut(s) 74, 89, 1560, 3067, 3388
BspANI GGCC 6 cut(s) 149, 745, 1317, 1413, 1558, 2764
BspDI ATCGAT 3 cut(s) 213, 2588, 3170
BspLI GGNNCC 4 cut(s) 1558, 1716, 1909, 2746
BspMAI CTGCAG 3 cut(s) 366, 465, 1744
BspMI ACCTGC 2 cut(s) 2788, 3408
BspPI GGATC 4 cut(s) 470, 792, 2543, 3175
BspQI GCTCTTC 1 cut(s) 2882
BspT104I TTCGAA 1 cut(s) 1655
BspT107I GGYRCC 2 cut(s) 1714, 2744
BspTI CTTAAG 4 cut(s) 428, 940, 3224, 3323
BspTNI GGTCTC 3 cut(s) 93, 386, 1303
BsrBI CCGCTC 1 cut(s) 74
BsrDI GCAATG 5 cut(s) 1280, 1677, 1953, 3010, 3017
BsrI ACTGG 5 cut(s) 18, 24, 1137, 1558, 2537
BssECI CCNNGG 6 cut(s) 234, 387, 984, 2190, 2349, 2350
BssNAI GTATAC 1 cut(s) 947
BssNI GRCGYC 1 cut(s) 715
BssT1I CCWWGG 3 cut(s) 234, 387, 2190
Bst1107I GTATAC 1 cut(s) 947
Bst2UI CCWGG 4 cut(s) 1802, 1976, 3024, 3165
Bst6I CTCTTC 5 cut(s) 750, 1502, 1935, 2882, 3348
BstACI GRCGYC 1 cut(s) 715
BstAFI CTTAAG 4 cut(s) 428, 940, 3224, 3323
BstAPI GCANNNNNTGC 2 cut(s) 2629, 3301
BstBI TTCGAA 1 cut(s) 1655
BstC8I GCNNGC 8 cut(s) 1319, 1560, 2451, 2522, 2578, 2754, 2870, 2894
BstEII GGTNACC 1 cut(s) 979
BstHHI GCGC 2 cut(s) 311, 3405
BstMWI GCNNNNNNNGC 4 cut(s) 370, 1555, 2629, 3301
BstNI CCWGG 4 cut(s) 1802, 1976, 3024, 3165
BstNSI RCATGY 5 cut(s) 1105, 1820, 2431, 2632, 2872
BstPAI GACNNNNGTC 1 cut(s) 189
BstPI GGTNACC 1 cut(s) 979
BstSCI CCNGG 7 cut(s) 1312, 1800, 1974, 2348, 2349, 3022, 3163
BstSFI CTRYAG 5 cut(s) 362, 461, 1227, 1740, 2407
BstSLI GKGCMC 2 cut(s) 939, 1560
BstV1I GCAGC 3 cut(s) 281, 653, 3288
BstV2I GAAGAC 2 cut(s) 148, 920
BstX2I RGATCY 3 cut(s) 424, 784, 1886
BstYI RGATCY 3 cut(s) 424, 784, 1886
BstZ17I GTATAC 1 cut(s) 947
Bsu15I ATCGAT 3 cut(s) 213, 2588, 3170
Bsu36I CCTNAGG 1 cut(s) 574
BsuRI GGCC 6 cut(s) 149, 745, 1317, 1413, 1558, 2764
BsuTUI ATCGAT 3 cut(s) 213, 2588, 3170
BtgZI GCGATG 1 cut(s) 3363
BtrI CACGTC 1 cut(s) 1489
BtsI GCAGTG 3 cut(s) 1682, 1737, 2998
BtsIMutI CAGTG 9 cut(s) 11, 1130, 1682, 1737, 2029, 2072, 2274, 2998, 3287
BveI ACCTGC 2 cut(s) 2788, 3408
Cac8I GCNNGC 8 cut(s) 1319, 1560, 2451, 2522, 2578, 2754, 2870, 2894
CfoI GCGC 2 cut(s) 311, 3405
Cfr13I GGNCC 9 cut(s) 79, 511, 873, 1214, 1315, 1556, 1557, 1798, 2227
Cfr9I CCCGGG 1 cut(s) 2349
ClaI ATCGAT 3 cut(s) 213, 2588, 3170
Csp6I GTAC 6 cut(s) 17, 1172, 1208, 1715, 2412, 2745
CviQI GTAC 6 cut(s) 17, 1172, 1208, 1715, 2412, 2745
DraI TTTAAA 1 cut(s) 1192
DriI GACNNNNNGTC 1 cut(s) 259
Eam1104I CTCTTC 5 cut(s) 750, 1502, 1935, 2882, 3348
Eam1105I GACNNNNNGTC 1 cut(s) 259
EarI CTCTTC 5 cut(s) 750, 1502, 1935, 2882, 3348
Ecl136II GAGCTC 3 cut(s) 841, 1989, 2341
Eco130I CCWWGG 3 cut(s) 234, 387, 2190
Eco147I AGGCCT 1 cut(s) 1413
Eco24I GRGCYC 5 cut(s) 340, 843, 1560, 1991, 2343
Eco31I GGTCTC 3 cut(s) 93, 386, 1303
Eco32I GATATC 3 cut(s) 2008, 2095, 2904
Eco47I GGWCC 6 cut(s) 79, 511, 873, 1214, 1798, 2227
Eco53kI GAGCTC 3 cut(s) 841, 1989, 2341
Eco57I CTGAAG 4 cut(s) 501, 1176, 2231, 3155
Eco81I CCTNAGG 1 cut(s) 574
Eco88I CYCGRG 2 cut(s) 2349, 3422
Eco91I GGTNACC 1 cut(s) 979
EcoICRI GAGCTC 3 cut(s) 841, 1989, 2341
EcoO65I GGTNACC 1 cut(s) 979
EcoRI GAATTC 1 cut(s) 1826
EcoRII CCWGG 4 cut(s) 1800, 1974, 3022, 3163
EcoRV GATATC 3 cut(s) 2008, 2095, 2904
EcoT14I CCWWGG 3 cut(s) 234, 387, 2190
EcoT22I ATGCAT 3 cut(s) 1930, 2686, 2968
EcoT38I GRGCYC 5 cut(s) 340, 843, 1560, 1991, 2343
ErhI CCWWGG 3 cut(s) 234, 387, 2190
Esp3I CGTCTC 1 cut(s) 722
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 2 cut(s) 1357, 2243
FauI CCCGC 2 cut(s) 1567, 3395
FbaI TGATCA 2 cut(s) 1014, 1269
FblI GTMKAC 3 cut(s) 493, 946, 1671
Fnu4HI GCNGC 4 cut(s) 90, 295, 642, 3302
FriOI GRGCYC 5 cut(s) 340, 843, 1560, 1991, 2343
Fsp4HI GCNGC 4 cut(s) 90, 295, 642, 3302
FspI TGCGCA 1 cut(s) 3404
GlaI GCGC 2 cut(s) 310, 3404
GluI GCNGC 4 cut(s) 90, 295, 642, 3302
GsaI CCCAGC 1 cut(s) 1757
HaeIII GGCC 6 cut(s) 149, 745, 1317, 1413, 1558, 2764
HapII CCGG 4 cut(s) 82, 1079, 1313, 2350
HhaI GCGC 2 cut(s) 311, 3405
Hin1I GRCGYC 1 cut(s) 715
Hin6I GCGC 2 cut(s) 309, 3403
HinP1I GCGC 2 cut(s) 309, 3403
HincII GTYRAC 1 cut(s) 1700
HindII GTYRAC 1 cut(s) 1700
HindIII AAGCTT 3 cut(s) 1514, 1590, 2522
HpaII CCGG 4 cut(s) 82, 1079, 1313, 2350
HphI GGTGA 6 cut(s) 694, 991, 1024, 1361, 1888, 2318
Hpy166II GTNNAC 7 cut(s) 79, 494, 511, 947, 1672, 1700, 2414
Hpy8I GTNNAC 7 cut(s) 79, 494, 511, 947, 1672, 1700, 2414
Hpy99I CGWCG 2 cut(s) 870, 1965
HpyCH4IV ACGT 5 cut(s) 715, 925, 1488, 1696, 1963
HpyF10VI GCNNNNNNNGC 4 cut(s) 370, 1555, 2629, 3301
HpySE526I ACGT 5 cut(s) 715, 925, 1488, 1696, 1963
Hsp92I GRCGYC 1 cut(s) 715
HspAI GCGC 2 cut(s) 309, 3403
KpnI GGTACC 2 cut(s) 1718, 2748
Ksp22I TGATCA 2 cut(s) 1014, 1269
LguI GCTCTTC 1 cut(s) 2882
LmnI GCTCC 4 cut(s) 370, 638, 1986, 3229
Lsp1109I GCAGC 3 cut(s) 281, 653, 3288
LweI GCATC 9 cut(s) 373, 529, 626, 652, 2073, 2176, 2257, 2953, 3036
MaeII ACGT 5 cut(s) 715, 925, 1488, 1696, 1963
MbiI CCGCTC 1 cut(s) 74
MfeI CAATTG 2 cut(s) 2786, 2882
MflI RGATCY 3 cut(s) 424, 784, 1886
MhlI GDGCHC 9 cut(s) 340, 689, 843, 857, 939, 1560, 1991, 2343, 3287
MlyI GAGTC 6 cut(s) 162, 199, 1474, 1541, 1945, 2265
MmeI TCCRAC 6 cut(s) 348, 429, 1213, 1430, 1459, 2977
Mph1103I ATGCAT 3 cut(s) 1930, 2686, 2968
MroXI GAANNNNTTC 3 cut(s) 42, 927, 2313
MslI CAYNNNNRTG 5 cut(s) 692, 2279, 2617, 2867, 3003
MspA1I CMGCKG 3 cut(s) 49, 1562, 3069
MspCI CTTAAG 4 cut(s) 428, 940, 3224, 3323
MspI CCGG 4 cut(s) 82, 1079, 1313, 2350
MspR9I CCNGG 7 cut(s) 1314, 1802, 1976, 2350, 2351, 3024, 3165
MunI CAATTG 2 cut(s) 2786, 2882
Mva1269I GAATGC 1 cut(s) 1970
MvaI CCWGG 4 cut(s) 1802, 1976, 3024, 3165
MwoI GCNNNNNNNGC 4 cut(s) 370, 1555, 2629, 3301
NciI CCSGG 3 cut(s) 1314, 2350, 2351
NlaIV GGNNCC 4 cut(s) 1558, 1716, 1909, 2746
NmuCI GTSAC 6 cut(s) 979, 1034, 1052, 1735, 1876, 2731
NsbI TGCGCA 1 cut(s) 3404
NsiI ATGCAT 3 cut(s) 1930, 2686, 2968
NspI RCATGY 5 cut(s) 1105, 1820, 2431, 2632, 2872
NspV TTCGAA 1 cut(s) 1655
PaeI GCATGC 1 cut(s) 2872
PceI AGGCCT 1 cut(s) 1413
PciSI GCTCTTC 1 cut(s) 2882
PctI GAATGC 1 cut(s) 1970
PdmI GAANNNNTTC 3 cut(s) 42, 927, 2313
PfeI GAWTC 6 cut(s) 527, 1023, 1244, 2129, 2974, 3427
PfoI TCCNGGA 2 cut(s) 1800, 1974
PkrI GCNGC 4 cut(s) 91, 296, 643, 3303
PleI GAGTC 6 cut(s) 161, 198, 1473, 1540, 1945, 2264
PpsI GAGTC 6 cut(s) 161, 198, 1473, 1540, 1945, 2264
PshAI GACNNNNGTC 1 cut(s) 189
PsiI TTATAA 1 cut(s) 2441
Psp124BI GAGCTC 3 cut(s) 843, 1991, 2343
Psp6I CCWGG 4 cut(s) 1800, 1974, 3022, 3163
PspEI GGTNACC 1 cut(s) 979
PspFI CCCAGC 1 cut(s) 1753
PspGI CCWGG 4 cut(s) 1800, 1974, 3022, 3163
PspN4I GGNNCC 4 cut(s) 1558, 1716, 1909, 2746
PspOMI GGGCCC 1 cut(s) 1556
PspPI GGNCC 9 cut(s) 79, 511, 873, 1214, 1315, 1556, 1557, 1798, 2227
PsrI GAACNNNNNNTAC 2 cut(s) 828, 860
PstI CTGCAG 3 cut(s) 366, 465, 1744
PsuI RGATCY 3 cut(s) 424, 784, 1886
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 6 cut(s) 18, 1173, 1209, 1716, 2413, 2746
RsaNI GTAC 6 cut(s) 17, 1172, 1208, 1715, 2412, 2745
RseI CAYNNNNRTG 5 cut(s) 692, 2279, 2617, 2867, 3003
SacI GAGCTC 3 cut(s) 843, 1991, 2343
SapI GCTCTTC 1 cut(s) 2882
SatI GCNGC 4 cut(s) 90, 295, 642, 3302
Sau96I GGNCC 9 cut(s) 79, 511, 873, 1214, 1315, 1556, 1557, 1798, 2227
SchI GAGTC 6 cut(s) 162, 199, 1474, 1541, 1945, 2265
ScrFI CCNGG 7 cut(s) 1314, 1802, 1976, 2350, 2351, 3024, 3165
SduI GDGCHC 9 cut(s) 340, 689, 843, 857, 939, 1560, 1991, 2343, 3287
SfaNI GCATC 9 cut(s) 373, 529, 626, 652, 2073, 2176, 2257, 2953, 3036
SfcI CTRYAG 5 cut(s) 362, 461, 1227, 1740, 2407
SfuI TTCGAA 1 cut(s) 1655
SinI GGWCC 6 cut(s) 79, 511, 873, 1214, 1798, 2227
SmaI CCCGGG 1 cut(s) 2351
SmiMI CAYNNNNRTG 5 cut(s) 692, 2279, 2617, 2867, 3003
SpeI ACTAGT 2 cut(s) 631, 2465
SphI GCATGC 1 cut(s) 2872
SseBI AGGCCT 1 cut(s) 1413
SsiI CCGC 5 cut(s) 74, 89, 1560, 3067, 3388
SspI AATATT 2 cut(s) 2314, 2992
SstI GAGCTC 3 cut(s) 843, 1991, 2343
StuI AGGCCT 1 cut(s) 1413
StyD4I CCNGG 7 cut(s) 1312, 1800, 1974, 2348, 2349, 3022, 3163
StyI CCWWGG 3 cut(s) 234, 387, 2190
TaiI ACGT 5 cut(s) 718, 928, 1491, 1699, 1966
TatI WGTACW 2 cut(s) 1207, 2411
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 6 cut(s) 527, 1023, 1244, 2129, 2974, 3427
TscAI CASTG 9 cut(s) 18, 1137, 1689, 1744, 2036, 2079, 2281, 3005, 3287
TseFI GTSAC 6 cut(s) 979, 1034, 1052, 1735, 1876, 2731
TseI GCWGC 3 cut(s) 294, 641, 3301
Tsp45I GTSAC 6 cut(s) 979, 1034, 1052, 1735, 1876, 2731
TspMI CCCGGG 1 cut(s) 2349
TspRI CASTG 9 cut(s) 18, 1137, 1689, 1744, 2036, 2079, 2281, 3005, 3287
Vha464I CTTAAG 4 cut(s) 428, 940, 3224, 3323
VpaK11BI GGWCC 6 cut(s) 79, 511, 873, 1214, 1798, 2227
XbaI TCTAGA 1 cut(s) 2548
XceI RCATGY 5 cut(s) 1105, 1820, 2431, 2632, 2872
XcmI CCANNNNNNNNNTGG 1 cut(s) 2094
XmaI CCCGGG 1 cut(s) 2349
XmiI GTMKAC 3 cut(s) 493, 946, 1671
XmnI GAANNNNTTC 3 cut(s) 42, 927, 2313
ZraI GACGTC 1 cut(s) 716
Zsp2I ATGCAT 3 cut(s) 1930, 2686, 2968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.