Rmu_sc0002205.1_g000041

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002205.1
OG0000039
Physical Location & Seq
Reverse (-)
176959 .. 180811
3853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002205.1_g000041.1.cds

Sequence Viewer

Length: 2784 bp
atggcagtggcattgataggaggagcgggtttgtcagtaacattttggacgctgtgtgattctgttaagcaagtgaaggagcagttcaaaccccaactcggggatatcaaatccactctggactcgttggaaccactgatcaaagagatggcagagtgtgagaaggaattgggtggtcaaggggaggaactagagaatcttagagtggaaatgggggaaggagtggagcttatccgcaagtgctcgaaagcgagcaggctcaagcagtataagtatggcagccggcttgttaaattgagcaagtcacttcaaagattgttggggatactcagagtgcagggaataagggatgtgaagaaggcactggtttcagtgaggaacattgagaatgtcgtgcagagaatcgaagggaattgtgtgatacagaacagtcagtctgaaaaaattcaagggtggtgtgctgtgcctgagcctccaacaattacggttggattggatgtgcctttgtgggaattgaagaagaagctctttactgacggagtttcgatggtgataattactgctcctggaggatgtggaaaaactacactggcaacaaagttgtgccaagatgcagaggtcaaagataaattcaagagcaatgtcttctttgttactgtttcaaagaagcccaacttatacctaattgtacaagagctgtatcatggaacgggtggccaggtccccgatttccaaaatgaagcaactgcagttagctggctgcagcaatttctgaagcaaacaggacaaaatcctatgttgttggtcctagatgatgtctgggcaggatcggaattcattcttgagaagtttgatgaattaaagatgtcagattgcaagatattggtaacatcatggtctgcttttccaagatttggttctccatattatctagaatgtttgaacgatgaagatgcaatggcactttttcaccatgcagcatccttaggagacaggagctcttatatttcagaagatctttcaagaaagatagtagaacgttgtatgggatttccacttgcaattacagttgttggaagatcactatgcgggcagccaatagagatttggcaaaaaagagtattggaatggtctagaggttcttctgttcttgagtctgaacatgatttgcttgattacctccagagtagcttagatgctttggatggagagaagtctcttatcagggaatgcttcatagaccttggtttatttcccaaagatcaaagaatctctgctactttcctcatcgatatgtgggcagagttatatggcatagaagacatttcgtccattgtgaatctctatgaactcgcctctcggagtttggctaatctggtagacacaaggaacgacaacaaggatggcgatggctattacactgaacacttagttacacagcttgacatgcttagggagttggctatccaacagattagtcgggaaccactacaacagagaatgagacttatggttgacataagtggagacaactttcctatgtggtggaaagaacaaaagttgattttgtcactccagtttttcctttatgtcaatgggaacgacaacaaggatggcgatggctattacactgaacactttgttacacagcttgacatgcttagggagttggctatccaacagattagtcgggaaccactacaacagagaatgagacttatgattgacataagtggagacaactttcctatgtggtggaaagaacaaaagaatcaatacctcatcactcgcgttgtatctatctcgacagacgaagagttttcatctaaatggcaaaacttgcaactaccagaagcagaggttttgattttgaactttcagaccaagtattatgccttacctgagtttgtggagaaaatgaataaactgaagactctagcactcacaagttcgggtaccagtcctgctgagttgaataactttcaactagttgattcgaaaccaaatttaaagagaatcagattagaacgaatttcatttccttcgataagcaggtatcctatacagttgaaaagtttgaaaaagatttctctattcatgtgtagcgtcggccaaggttttggtaacggttgcatacatatatcagaggcgtttccaaatcttgttgaaatgaatattgattactgcaatgatttggtggagctgcctgccgatctctgtgaccttattcaattgaagaaactcagtgtcaccaattctcataagctctccgtcttacctgaagacattggaaatctggtaaatttagagctgctgaggcttaggtgttgtacagacttgtcagagttacccggctcgattaggaacctcaagaacttaaacttgcttgacatatcaaattgctttagccttaaggaattgcctgaagacattggaaatctggtaaatttagagctgctgaggcttaggtgttgtacagacttgtcagagttacccggctcgattaggaacctcaagaacttaaacttgcttgacatatcaaattgctttagccttaaggaattgcctgaagacattggagaaatgtgcagtttagagaagctcaacatgagacagtgctcgagattgaatgagttgccttcatcagttgtggatcttgaaaagttaatggaagtgacatgtgatgaagagacagaaatcttatgggagcccttcttaccgtttctcaggaacatacacataaaggttgtgaaagaagatatgaacctgaattggctccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

927

Amino Acids

105.53

Weight (kDa)

5.12

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2043
Acc65I GGTACC 1 cut(s) 1955
AccB1I GGYRCC 1 cut(s) 1955
AccB7I CCANNNNNTGG 1 cut(s) 914
AccBSI CCGCTC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 1380
AccII CGCG 1 cut(s) 1791
AciI CCGC 3 cut(s) 26, 235, 1089
AclI AACGTT 1 cut(s) 1039
AclWI GGATC 2 cut(s) 835, 2661
AcoI YGGCCR 2 cut(s) 715, 2110
AcsI RAATTY 7 cut(s) 444, 629, 833, 2005, 2031, 2302, 2446
AcuI CTGAAG 5 cut(s) 794, 1949, 2301, 2445, 2589
AfaI GTAC 4 cut(s) 690, 1957, 2332, 2476
AfiI CCNNNNNNNGG 4 cut(s) 98, 99, 100, 914
AflII CTTAAG 2 cut(s) 2411, 2555
AflIII ACRYGT 1 cut(s) 2678
AhdI GACNNNNNGTC 1 cut(s) 1327
AhlI ACTAGT 1 cut(s) 1987
AjnI CCWGG 2 cut(s) 565, 717
AjuI GAANNNNNNNTTGG 2 cut(s) 901, 933
Alw21I GWGCWC 3 cut(s) 245, 1001, 2621
Alw26I GTCTC 8 cut(s) 984, 1221, 1498, 1521, 1708, 1731, 2605, 2684
AlwI GGATC 2 cut(s) 835, 2661
Ama87I CYCGRG 2 cut(s) 98, 2620
AoxI GGCC 2 cut(s) 715, 2110
ApeKI GCWGC 8 cut(s) 279, 760, 763, 977, 1093, 2203, 2311, 2455
ApoI RAATTY 7 cut(s) 444, 629, 833, 2005, 2031, 2302, 2446
Asp700I GAANNNNTTC 2 cut(s) 444, 837
Asp718I GGTACC 1 cut(s) 1955
AspS9I GGNCC 2 cut(s) 721, 805
AsuC2I CCSGG 2 cut(s) 2352, 2496
AsuHPI GGTGA 3 cut(s) 562, 962, 2242
AsuII TTCGAA 1 cut(s) 1997
AvaI CYCGRG 2 cut(s) 98, 2620
AvaII GGWCC 2 cut(s) 721, 805
AxyI CCTNAGG 1 cut(s) 985
BalI TGGCCA 1 cut(s) 717
BanI GGYRCC 1 cut(s) 1955
BanII GRGCYC 2 cut(s) 1001, 2712
BbsI GAAGAC 6 cut(s) 637, 1326, 1937, 2289, 2433, 2577
Bbv12I GWGCWC 3 cut(s) 245, 1001, 2621
BbvCI CCTCAGC 2 cut(s) 2315, 2459
BbvI GCAGC 8 cut(s) 291, 747, 775, 989, 1105, 2190, 2298, 2442
BccI CCATC 7 cut(s) 142, 541, 1199, 1397, 1403, 1607, 1613
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 2 cut(s) 567, 719
BciVI GTATCC 2 cut(s) 318, 2067
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 2 cut(s) 2352, 2496
BcoDI GTCTC 8 cut(s) 984, 1221, 1498, 1521, 1708, 1731, 2605, 2684
BcuI ACTAGT 1 cut(s) 1987
BfaI CTAG 7 cut(s) 191, 809, 932, 1134, 1937, 1988, 2782
BfmI CTRYAG 2 cut(s) 747, 761
BfrI CTTAAG 2 cut(s) 2411, 2555
BfuAI ACCTGC 1 cut(s) 2043
BfuI GTATCC 2 cut(s) 318, 2067
BglII AGATCT 1 cut(s) 1015
BisI GCNGC 8 cut(s) 280, 761, 764, 978, 1094, 2204, 2312, 2456
BlsI GCNGC 8 cut(s) 281, 762, 765, 979, 1095, 2205, 2313, 2457
Bme1390I CCNGG 4 cut(s) 567, 719, 2352, 2496
Bme18I GGWCC 2 cut(s) 721, 805
BmeRI GACNNNNNGTC 1 cut(s) 1327
BmeT110I CYCGRG 2 cut(s) 98, 2620
BmgT120I GGNCC 2 cut(s) 721, 805
BmiI GGNNCC 9 cut(s) 132, 723, 1485, 1695, 1957, 2366, 2510, 2709, 2777
BmrFI CCNGG 4 cut(s) 567, 719, 2352, 2496
BmsI GCATC 4 cut(s) 601, 943, 989, 1186
BpiI GAAGAC 6 cut(s) 637, 1326, 1937, 2289, 2433, 2577
BpmI CTGGAG 3 cut(s) 588, 1166, 1559
Bpu10I CCTNAGC 7 cut(s) 468, 1451, 1661, 2315, 2321, 2459, 2465
Bpu14I TTCGAA 1 cut(s) 1997
BpuEI CTTGAG 5 cut(s) 245, 863, 1172, 2354, 2498
BpuMI CCSGG 2 cut(s) 2352, 2496
Bsa29I ATCGAT 1 cut(s) 1290
BsaJI CCNNGG 2 cut(s) 1243, 2113
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 99, 100, 914
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 4 cut(s) 369, 594, 1576, 1959
Bse21I CCTNAGG 1 cut(s) 985
Bse3DI GCAATG 3 cut(s) 646, 963, 2194
BseBI CCWGG 2 cut(s) 567, 719
BseCI ATCGAT 1 cut(s) 1290
BseDI CCNNGG 2 cut(s) 1243, 2113
BseGI GGATG 7 cut(s) 355, 502, 578, 980, 1210, 1408, 1618
BseLI CCNNNNNNNGG 4 cut(s) 98, 99, 100, 914
BseMI GCAATG 3 cut(s) 646, 963, 2194
BseMII CTCAG 8 cut(s) 343, 459, 1893, 1959, 2257, 2306, 2450, 2740
BseNI ACTGG 4 cut(s) 369, 594, 1576, 1959
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 8 cut(s) 291, 747, 775, 989, 1105, 2190, 2298, 2442
BsgI GTGCAG 3 cut(s) 356, 416, 2608
Bsh1236I CGCG 1 cut(s) 1791
BshFI GGCC 2 cut(s) 717, 2112
BshNI GGYRCC 1 cut(s) 1955
BshVI ATCGAT 1 cut(s) 1290
BsiHKAI GWGCWC 3 cut(s) 245, 1001, 2621
BsiHKCI CYCGRG 2 cut(s) 98, 2620
BsiSI CCGG 3 cut(s) 283, 2352, 2496
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 4 cut(s) 98, 99, 100, 914
BsmAI GTCTC 8 cut(s) 984, 1221, 1498, 1521, 1708, 1731, 2605, 2684
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 1235
BsnI GGCC 2 cut(s) 717, 2112
BsoBI CYCGRG 2 cut(s) 98, 2620
Bsp119I TTCGAA 1 cut(s) 1997
Bsp1286I GDGCHC 4 cut(s) 245, 1001, 2621, 2712
Bsp1407I TGTACA 3 cut(s) 688, 2330, 2474
Bsp143I GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2212, 2653
BspACI CCGC 3 cut(s) 26, 235, 1089
BspANI GGCC 2 cut(s) 717, 2112
BspCNI CTCAG 8 cut(s) 342, 460, 1894, 1960, 2256, 2307, 2451, 2739
BspDI ATCGAT 1 cut(s) 1290
BspFNI CGCG 1 cut(s) 1791
BspLI GGNNCC 9 cut(s) 132, 723, 1485, 1695, 1957, 2366, 2510, 2709, 2777
BspMAI CTGCAG 2 cut(s) 751, 765
BspMI ACCTGC 1 cut(s) 2043
BspPI GGATC 2 cut(s) 835, 2661
BspT104I TTCGAA 1 cut(s) 1997
BspT107I GGYRCC 1 cut(s) 1955
BspTI CTTAAG 2 cut(s) 2411, 2555
BsrBI CCGCTC 1 cut(s) 26
BsrDI GCAATG 3 cut(s) 646, 963, 2194
BsrFI RCCGGY 1 cut(s) 282
BsrGI TGTACA 3 cut(s) 688, 2330, 2474
BsrI ACTGG 4 cut(s) 369, 594, 1576, 1959
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 1243, 2113
BssMI GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2212, 2653
BssT1I CCWWGG 2 cut(s) 1243, 2113
Bst2UI CCWGG 2 cut(s) 567, 719
Bst4CI ACNGT 8 cut(s) 431, 487, 658, 1069, 2067, 2129, 2616, 2721
Bst6I CTCTTC 2 cut(s) 1809, 2682
BstAFI CTTAAG 2 cut(s) 2411, 2555
BstAPI GCANNNNNTGC 1 cut(s) 1840
BstAUI TGTACA 3 cut(s) 688, 2330, 2474
BstBI TTCGAA 1 cut(s) 1997
BstC8I GCNNGC 6 cut(s) 253, 257, 284, 758, 1091, 2208
BstF5I GGATG 7 cut(s) 355, 502, 578, 980, 1210, 1408, 1618
BstFNI CGCG 1 cut(s) 1791
BstKTI GATC 7 cut(s) 141, 830, 1018, 1082, 1264, 2215, 2656
BstMAI GTCTC 8 cut(s) 984, 1221, 1498, 1521, 1708, 1731, 2605, 2684
BstMBI GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2212, 2653
BstMWI GCNNNNNNNGC 5 cut(s) 1447, 1657, 1840, 2317, 2461
BstNI CCWGG 2 cut(s) 567, 719
BstNSI RCATGY 3 cut(s) 1450, 1660, 2682
BstSCI CCNGG 4 cut(s) 565, 717, 2350, 2494
BstSFI CTRYAG 2 cut(s) 747, 761
BstUI CGCG 1 cut(s) 1791
BstV1I GCAGC 8 cut(s) 291, 747, 775, 989, 1105, 2190, 2298, 2442
BstV2I GAAGAC 6 cut(s) 637, 1326, 1937, 2289, 2433, 2577
BstX2I RGATCY 2 cut(s) 1015, 2653
BstXI CCANNNNNNTGG 1 cut(s) 2120
BstYI RGATCY 2 cut(s) 1015, 2653
Bsu15I ATCGAT 1 cut(s) 1290
Bsu36I CCTNAGG 1 cut(s) 985
BsuI GTATCC 2 cut(s) 318, 2067
BsuRI GGCC 2 cut(s) 717, 2112
BsuTUI ATCGAT 1 cut(s) 1290
BtgZI GCGATG 2 cut(s) 1422, 1632
BtsCI GGATG 7 cut(s) 355, 502, 578, 980, 1210, 1408, 1618
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 9 cut(s) 12, 134, 362, 378, 587, 1419, 1629, 2251, 2621
BveI ACCTGC 1 cut(s) 2043
Cac8I GCNNGC 6 cut(s) 253, 257, 284, 758, 1091, 2208
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 2 cut(s) 721, 805
ClaI ATCGAT 1 cut(s) 1290
CseI GACGC 2 cut(s) 58, 2095
Csp6I GTAC 4 cut(s) 689, 1956, 2331, 2475
CviAII CATG 9 cut(s) 704, 894, 974, 1163, 1447, 1657, 2098, 2608, 2679
CviQI GTAC 4 cut(s) 689, 1956, 2331, 2475
DpnI GATC 7 cut(s) 140, 829, 1017, 1081, 1263, 2214, 2655
DpnII GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2212, 2653
DraI TTTAAA 1 cut(s) 2010
DriI GACNNNNNGTC 1 cut(s) 1327
EaeI YGGCCR 2 cut(s) 715, 2110
Eam1104I CTCTTC 2 cut(s) 1809, 2682
Eam1105I GACNNNNNGTC 1 cut(s) 1327
EarI CTCTTC 2 cut(s) 1809, 2682
Ecl136II GAGCTC 1 cut(s) 999
Eco130I CCWWGG 2 cut(s) 1243, 2113
Eco24I GRGCYC 2 cut(s) 1001, 2712
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 721, 805
Eco53kI GAGCTC 1 cut(s) 999
Eco57I CTGAAG 5 cut(s) 794, 1949, 2301, 2445, 2589
Eco81I CCTNAGG 1 cut(s) 985
Eco88I CYCGRG 2 cut(s) 98, 2620
EcoICRI GAGCTC 1 cut(s) 999
EcoO109I RGGNCCY 1 cut(s) 721
EcoRI GAATTC 1 cut(s) 833
EcoRII CCWGG 2 cut(s) 565, 717
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 1243, 2113
EcoT38I GRGCYC 2 cut(s) 1001, 2712
ErhI CCWWGG 2 cut(s) 1243, 2113
FaeI CATG 9 cut(s) 707, 897, 977, 1166, 1450, 1660, 2101, 2611, 2682
FalI AAGNNNNNCTT 4 cut(s) 512, 544, 659, 691
FaqI GGGAC 1 cut(s) 707
FatI CATG 9 cut(s) 703, 893, 973, 1162, 1446, 1656, 2097, 2607, 2678
FauI CCCGC 2 cut(s) 19, 1082
FbaI TGATCA 1 cut(s) 138
FblI GTMKAC 1 cut(s) 1380
Fnu4HI GCNGC 8 cut(s) 280, 761, 764, 978, 1094, 2204, 2312, 2456
FokI GGATG 7 cut(s) 362, 509, 585, 967, 1217, 1415, 1625
FriOI GRGCYC 2 cut(s) 1001, 2712
Fsp4HI GCNGC 8 cut(s) 280, 761, 764, 978, 1094, 2204, 2312, 2456
FspBI CTAG 7 cut(s) 191, 809, 932, 1134, 1937, 1988, 2782
GluI GCNGC 8 cut(s) 280, 761, 764, 978, 1094, 2204, 2312, 2456
GsuI CTGGAG 3 cut(s) 588, 1166, 1559
HaeIII GGCC 2 cut(s) 717, 2112
HapII CCGG 3 cut(s) 283, 2352, 2496
HgaI GACGC 2 cut(s) 58, 2095
Hin1II CATG 9 cut(s) 707, 897, 977, 1166, 1450, 1660, 2101, 2611, 2682
HincII GTYRAC 1 cut(s) 1516
HindII GTYRAC 1 cut(s) 1516
HpaII CCGG 3 cut(s) 283, 2352, 2496
HphI GGTGA 3 cut(s) 562, 962, 2242
Hpy166II GTNNAC 2 cut(s) 1381, 1516
Hpy8I GTNNAC 2 cut(s) 1381, 1516
Hpy99I CGWCG 1 cut(s) 2111
HpyAV CCTTC 8 cut(s) 70, 157, 212, 352, 401, 2052, 2649, 2722
HpyCH4III ACNGT 8 cut(s) 431, 487, 658, 1069, 2067, 2129, 2616, 2721
HpyCH4IV ACGT 1 cut(s) 1039
HpyF10VI GCNNNNNNNGC 5 cut(s) 1447, 1657, 1840, 2317, 2461
HpySE526I ACGT 1 cut(s) 1039
Hsp92II CATG 9 cut(s) 707, 897, 977, 1166, 1450, 1660, 2101, 2611, 2682
KpnI GGTACC 1 cut(s) 1959
KroI GCCGGC 1 cut(s) 282
KroNI GCCGGC 1 cut(s) 284
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2212, 2653
LmnI GCTCC 8 cut(s) 23, 79, 226, 568, 996, 2200, 2707, 2781
Lsp1109I GCAGC 8 cut(s) 291, 747, 775, 989, 1105, 2190, 2298, 2442
LweI GCATC 4 cut(s) 601, 943, 989, 1186
MaeI CTAG 7 cut(s) 191, 809, 932, 1134, 1937, 1988, 2782
MaeII ACGT 1 cut(s) 1039
MalI GATC 7 cut(s) 140, 829, 1017, 1081, 1263, 2214, 2655
MbiI CCGCTC 1 cut(s) 26
MboI GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2212, 2653
MfeI CAATTG 1 cut(s) 2231
MflI RGATCY 2 cut(s) 1015, 2653
MhlI GDGCHC 4 cut(s) 245, 1001, 2621, 2712
MlsI TGGCCA 1 cut(s) 717
MluNI TGGCCA 1 cut(s) 717
MlyI GAGTC 3 cut(s) 116, 1163, 1927
MmeI TCCRAC 6 cut(s) 108, 469, 500, 1054, 1492, 1702
Mox20I TGGCCA 1 cut(s) 717
MroNI GCCGGC 1 cut(s) 282
MroXI GAANNNNTTC 2 cut(s) 444, 837
MscI TGGCCA 1 cut(s) 717
MseI TTAA 9 cut(s) 66, 291, 860, 2009, 2378, 2412, 2522, 2556, 2666
MslI CAYNNNNRTG 2 cut(s) 1292, 1828
Msp20I TGGCCA 1 cut(s) 717
MspCI CTTAAG 2 cut(s) 2411, 2555
MspI CCGG 3 cut(s) 283, 2352, 2496
MspR9I CCNGG 4 cut(s) 567, 719, 2352, 2496
MunI CAATTG 1 cut(s) 2231
Mva1269I GAATGC 1 cut(s) 1235
MvaI CCWGG 2 cut(s) 567, 719
MvnI CGCG 1 cut(s) 1791
MwoI GCNNNNNNNGC 5 cut(s) 1447, 1657, 1840, 2317, 2461
NaeI GCCGGC 1 cut(s) 284
NciI CCSGG 2 cut(s) 2352, 2496
NdeII GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2212, 2653
NgoMIV GCCGGC 1 cut(s) 282
NlaIII CATG 9 cut(s) 707, 897, 977, 1166, 1450, 1660, 2101, 2611, 2682
NlaIV GGNNCC 9 cut(s) 132, 723, 1485, 1695, 1957, 2366, 2510, 2709, 2777
NmuCI GTSAC 5 cut(s) 303, 1569, 2219, 2248, 2674
NspI RCATGY 3 cut(s) 1450, 1660, 2682
NspV TTCGAA 1 cut(s) 1997
PaeR7I CTCGAG 1 cut(s) 2620
PciI ACATGT 1 cut(s) 2678
PctI GAATGC 1 cut(s) 1235
PdiI GCCGGC 1 cut(s) 284
PdmI GAANNNNTTC 2 cut(s) 444, 837
PfeI GAWTC 8 cut(s) 59, 196, 402, 1269, 1339, 1771, 1994, 2016
PflMI CCANNNNNTGG 1 cut(s) 914
PfoI TCCNGGA 1 cut(s) 565
PkrI GCNGC 8 cut(s) 281, 762, 765, 979, 1095, 2205, 2313, 2457
PleI GAGTC 3 cut(s) 116, 1162, 1927
PpsI GAGTC 3 cut(s) 116, 1162, 1927
PpuMI RGGWCCY 1 cut(s) 721
PscI ACATGT 1 cut(s) 2678
Psp124BI GAGCTC 1 cut(s) 1001
Psp1406I AACGTT 1 cut(s) 1039
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 565, 717
PspGI CCWGG 2 cut(s) 565, 717
PspN4I GGNNCC 9 cut(s) 132, 723, 1485, 1695, 1957, 2366, 2510, 2709, 2777
PspPI GGNCC 2 cut(s) 721, 805
PspPPI RGGWCCY 1 cut(s) 721
PstI CTGCAG 2 cut(s) 751, 765
PsuI RGATCY 2 cut(s) 1015, 2653
RsaI GTAC 4 cut(s) 690, 1957, 2332, 2476
RsaNI GTAC 4 cut(s) 689, 1956, 2331, 2475
RseI CAYNNNNRTG 2 cut(s) 1292, 1828
SacI GAGCTC 1 cut(s) 1001
SaqAI TTAA 9 cut(s) 66, 291, 860, 2009, 2378, 2412, 2522, 2556, 2666
SatI GCNGC 8 cut(s) 280, 761, 764, 978, 1094, 2204, 2312, 2456
Sau3AI GATC 7 cut(s) 138, 827, 1015, 1079, 1261, 2212, 2653
Sau96I GGNCC 2 cut(s) 721, 805
SchI GAGTC 3 cut(s) 116, 1163, 1927
ScrFI CCNGG 4 cut(s) 567, 719, 2352, 2496
SduI GDGCHC 4 cut(s) 245, 1001, 2621, 2712
SfaNI GCATC 4 cut(s) 601, 943, 989, 1186
SfcI CTRYAG 2 cut(s) 747, 761
Sfr274I CTCGAG 1 cut(s) 2620
SfuI TTCGAA 1 cut(s) 1997
SinI GGWCC 2 cut(s) 721, 805
SlaI CTCGAG 1 cut(s) 2620
SmiMI CAYNNNNRTG 2 cut(s) 1292, 1828
SmlI CTYRAG 8 cut(s) 260, 842, 1151, 2369, 2411, 2513, 2555, 2620
SmoI CTYRAG 8 cut(s) 260, 842, 1151, 2369, 2411, 2513, 2555, 2620
SpeI ACTAGT 1 cut(s) 1987
SsiI CCGC 3 cut(s) 26, 235, 1089
SspI AATATT 1 cut(s) 2176
SspMI CTAG 7 cut(s) 191, 809, 932, 1134, 1937, 1988, 2782
SstI GAGCTC 1 cut(s) 1001
StyD4I CCNGG 4 cut(s) 565, 717, 2350, 2494
StyI CCWWGG 2 cut(s) 1243, 2113
TaaI ACNGT 8 cut(s) 431, 487, 658, 1069, 2067, 2129, 2616, 2721
TaiI ACGT 1 cut(s) 1042
TatI WGTACW 3 cut(s) 688, 2330, 2474
TfiI GAWTC 8 cut(s) 59, 196, 402, 1269, 1339, 1771, 1994, 2016
Tru1I TTAA 9 cut(s) 66, 291, 860, 2009, 2378, 2412, 2522, 2556, 2666
Tru9I TTAA 9 cut(s) 66, 291, 860, 2009, 2378, 2412, 2522, 2556, 2666
TscAI CASTG 9 cut(s) 12, 141, 369, 378, 594, 1426, 1636, 2251, 2621
TseFI GTSAC 5 cut(s) 303, 1569, 2219, 2248, 2674
TseI GCWGC 8 cut(s) 279, 760, 763, 977, 1093, 2203, 2311, 2455
Tsp45I GTSAC 5 cut(s) 303, 1569, 2219, 2248, 2674
TspGWI ACGGA 2 cut(s) 552, 2260
TspRI CASTG 9 cut(s) 12, 141, 369, 378, 594, 1426, 1636, 2251, 2621
Van91I CCANNNNNTGG 1 cut(s) 914
Vha464I CTTAAG 2 cut(s) 2411, 2555
VpaK11BI GGWCC 2 cut(s) 721, 805
XapI RAATTY 7 cut(s) 444, 629, 833, 2005, 2031, 2302, 2446
XbaI TCTAGA 2 cut(s) 931, 1133
XceI RCATGY 3 cut(s) 1450, 1660, 2682
XcmI CCANNNNNNNNNTGG 1 cut(s) 1104
XhoI CTCGAG 1 cut(s) 2620
XmiI GTMKAC 1 cut(s) 1380
XmnI GAANNNNTTC 2 cut(s) 444, 837
XspI CTAG 7 cut(s) 191, 809, 932, 1134, 1937, 1988, 2782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.