Rroxscaffold_2G00139060

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000039
Physical Location & Seq
Reverse (-)
77321935 .. 77325725
3791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139060.1

Sequence Viewer

Length: 2103 bp
ATGGGATGTACCGAATTGAAGGCCGGAGTTGAAACAAGCAGTAGCATTGTGGAGGCAGGGTTCAAGCGGATTGAAGACCGACTTAATACACGAAATGGAGCTAAAGTTGGAGCTTGGTGTGTTGTGCCTGAACTTGCCCAGTTTACGGTTGGATTGGATGAGCCTTTGAAGGAATTGAAGATGAAACTTCTCAAGGAAGATGGAGTCTCGATGCTAGTGGTCACTGCTCCCGGAGGATGTGGGAAAACTACATTGGCAACTAAGTTTTGTCAAGATGAGCAAGTCAAAGATAAATTCAAGAATAATATCTACTTTGTCACTGTGTCAAACACACCAAACCTGAGCCATATTGTGCAAGAGTTATACCAACGCAAGGGTTCCCAGGTGCCTACTTTCCGAGATGAAATAACTGCAGTCAAGTGGCTGCAAACATTTCTGAAGGAAGAAGGACAAAACCCTTTACTATTAGTCTTGGATGATGTTTGGTCTGGATCAGAATCCCTACTAGACAAGTTTCAGTTTGAAATGCCAGATTACAAGATTTTGGTCACATCAAGATCTGAATTTCCTAGATTTGGTTCCCCATATCATTTACGATCATTGGACTATGTCAATGCCATGAAACTTTTTCATCATTCAGCATCCTTGGGAGATAAAAGCTCACATATCCCAACAGACCTCGCGAGACAGATAGTAGAAGGCTGTAAGGGATTTCCACTTGCAATTACGGTGGCAGGAGGATCACTTTGCGGACAAAGTATAGAGATCTGGCAACAAAGACTAATTGAATGGTCCAAAGGGTCTTCTATTCTTGATTCTGAGACCGAATTGCTTCTTCGCCTCCAAAGCAGCTTAGTTGTCTCGGATAAAGAAACGGCTATCATCAGGGAGTGTTTCTTAGACCTTGGTTCATTTCCTGAAGACCAAAGAATCCCAGTTGCTGCCCTCATTGATATGTGGACAGAGTCATATGATCAGCTAGAAGAAGAGACTTTGTGTGTTGCATACCTCCACAGGCTCACCAACCGAAGTCTGGCTAATCTTGTAGTCACACGGAAGGACCGAAGCCAGGGGGATGGATACTACAGCGAACATTTTGTTACTCAGCATGATCTGCTTAGAGAGTTGGCTATCTATGAGACAAGACAACAAGACCCAGGACATAGAGAAAGACTGATTATAAACATAACTGGAGACAATCTTCCAAAATGGTGGAGTGAACAGAAGTATGAATCCATGAAAGCACGCCTATTATCCATCTCAACTGATGGAACTTTCTCATCAAAATGGTACCACATGGAACTACCAGAAGCTGAGGTTCTAGTCTTGAATTTTCAGACGAAGAACTATGCCTTACCCAAATTTGTGGACACTATGCATAAATTGAAGGTACTTGTCGTCACAAATTTTGGTTTCTCACCTGCTGAACTAGGTAATATCCCACTACTGGTTTCGTTATCTCATCTAAAGAGAATTAGATTGGAGCGTGTCTCAATACCTTCAATAACCAAGAACCCCATACAATTGGTGGGTCTGAAGAAGATGTCTTTATTCATGTGTACCATTGGAAAAGCTTTCAGCGACAGTTCCATCCAGATTTCACACGCATTTCCAAATCTAGAGGAAATTAGCATAGACTATTGTAATGATTTGGTGGAAATTCCTGCCGACCTCTGTGATCTTATTCATCTAAGGAAGCTCAGTGTCACCAACTCGCATAAGCTTCTTGCCCTGCCTGAAGAGATTGGAAAACTGGAAAATTTGGAACTGCTGAGACTGAGGTCATGTACAGACTTGGCACAATTGCCAGGCTCGAGCAGGAACCTAAAGAAGTTGATCTTTCTTGACATTTCTTATTGCTTTAGCATCAAGGAGTTGCCTGAAGATATTGGTGAAATGAGCAGCTTAAGAAAGCTCAACATGAGAGAATGCTCAAGATTGCAAGAAGTGCCTGTATCGGTTTTGGATCTTGAGCATTTGGAGGAAGTGATATGTGATGATGAGACAAGAAATTTATGGGAACCCTTACCTCTCGGAAACACAAAAATATTGGTGGAAAAAGAAAATATCAACCTAAATTGGCTCCATAAGCTTCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

700

Amino Acids

79.45

Weight (kDa)

5.64

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 54 - 188 2.6e-16 NB-ARC domain
AAA_22 PF13401 70 - 161 7.3e-06 AAA domain
LRR_14 PF23598 536 - 618 2.6e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1181
AarI CACCTGC 1 cut(s) 1429
Acc36I ACCTGC 1 cut(s) 1429
Acc65I GGTACC 1 cut(s) 1290
AccB1I GGYRCC 2 cut(s) 385, 1290
AccII CGCG 1 cut(s) 683
AciI CCGC 2 cut(s) 67, 750
AclWI GGATC 3 cut(s) 499, 748, 1974
AcsI RAATTY 8 cut(s) 293, 563, 1330, 1361, 1405, 1659, 1759, 2011
AcuI CTGAAG 5 cut(s) 458, 939, 1556, 1758, 1902
AfaI GTAC 5 cut(s) 10, 1292, 1392, 1561, 1789
AfiI CCNNNNNNNGG 6 cut(s) 145, 373, 575, 1033, 1069, 1447
AflII CTTAAG 1 cut(s) 1906
AjnI CCWGG 4 cut(s) 381, 1068, 1156, 1807
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
AlwI GGATC 3 cut(s) 499, 748, 1974
AlwNI CAGNNNCTG 2 cut(s) 941, 1313
Ama87I CYCGRG 1 cut(s) 1813
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 4 cut(s) 424, 849, 941, 1902
ApoI RAATTY 8 cut(s) 293, 563, 1330, 1361, 1405, 1659, 1759, 2011
Asp700I GAANNNNTTC 1 cut(s) 831
Asp718I GGTACC 1 cut(s) 1290
AspS9I GGNCC 2 cut(s) 792, 1060
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 4 cut(s) 1012, 1410, 1699, 1904
AvaI CYCGRG 1 cut(s) 1813
AvaII GGWCC 2 cut(s) 792, 1060
BanI GGYRCC 2 cut(s) 385, 1290
BbsI GAAGAC 3 cut(s) 81, 795, 927
BbvCI CCTCAGC 1 cut(s) 1314
BbvI GCAGC 4 cut(s) 411, 861, 928, 1914
BccI CCATC 5 cut(s) 194, 1070, 1262, 1265, 1598
BceAI ACGGC 1 cut(s) 891
BciT130I CCWGG 4 cut(s) 383, 1070, 1158, 1809
BciVI GTATCC 1 cut(s) 1073
BclI TGATCA 1 cut(s) 973
BcnI CCSGG 1 cut(s) 231
BfaI CTAG 7 cut(s) 215, 506, 570, 980, 1322, 1430, 1619
BfmI CTRYAG 2 cut(s) 411, 1084
BfrI CTTAAG 1 cut(s) 1906
BfuAI ACCTGC 1 cut(s) 1429
BfuI GTATCC 1 cut(s) 1073
BglII AGATCT 2 cut(s) 557, 765
BisI GCNGC 4 cut(s) 425, 850, 942, 1903
BlsI GCNGC 4 cut(s) 426, 851, 943, 1904
Bme1390I CCNGG 5 cut(s) 231, 383, 1070, 1158, 1809
Bme18I GGWCC 2 cut(s) 792, 1060
BmeT110I CYCGRG 1 cut(s) 1813
BmgT120I GGNCC 2 cut(s) 792, 1060
BmiI GGNNCC 7 cut(s) 379, 387, 580, 1292, 1823, 2022, 2084
BmrFI CCNGG 5 cut(s) 231, 383, 1070, 1158, 1809
BmrI ACTGGG 2 cut(s) 133, 929
BmsI GCATC 3 cut(s) 201, 650, 1875
BmuI ACTGGG 2 cut(s) 133, 929
BoxI GACNNNNGTC 1 cut(s) 1780
BpiI GAAGAC 3 cut(s) 81, 795, 927
BplI GAGNNNNNCTC 2 cut(s) 1475, 1507
BpmI CTGGAG 1 cut(s) 1212
Bpu10I CCTNAGC 2 cut(s) 341, 1314
BpuEI CTTGAG 3 cut(s) 176, 1918, 1991
BpuMI CCSGG 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 496
BsaI GGTCTC 1 cut(s) 815
BsaJI CCNNGG 5 cut(s) 381, 645, 904, 1069, 1156
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 90, 120
Bsc4I CCNNNNNNNGG 6 cut(s) 145, 373, 575, 1033, 1069, 1447
Bse1I ACTGG 5 cut(s) 139, 935, 1195, 1452, 1758
Bse8I GATNNNNATC 1 cut(s) 496
BseBI CCWGG 4 cut(s) 383, 1070, 1158, 1809
BseDI CCNNGG 5 cut(s) 381, 645, 904, 1069, 1156
BseGI GGATG 7 cut(s) 11, 163, 242, 481, 641, 1081, 1590
BseJI GATNNNNATC 1 cut(s) 496
BseLI CCNNNNNNNGG 6 cut(s) 145, 373, 575, 1033, 1069, 1447
BseMII CTCAG 7 cut(s) 332, 810, 1118, 1305, 1714, 1763, 1769
BseNI ACTGG 5 cut(s) 139, 935, 1195, 1452, 1758
BseXI GCAGC 4 cut(s) 411, 861, 928, 1914
Bsh1236I CGCG 1 cut(s) 683
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 2 cut(s) 385, 1290
BsiHKCI CYCGRG 1 cut(s) 1813
BsiSI CCGG 2 cut(s) 24, 231
BslI CCNNNNNNNGG 6 cut(s) 145, 373, 575, 1033, 1069, 1447
BsmI GAATGC 1 cut(s) 1934
BsnI GGCC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 815
BsoBI CYCGRG 1 cut(s) 1813
Bsp1407I TGTACA 1 cut(s) 1787
Bsp68I TCGCGA 1 cut(s) 683
BspACI CCGC 2 cut(s) 67, 750
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 7 cut(s) 333, 811, 1117, 1306, 1713, 1764, 1770
BspFNI CGCG 1 cut(s) 683
BspLI GGNNCC 7 cut(s) 379, 387, 580, 1292, 1823, 2022, 2084
BspMAI CTGCAG 1 cut(s) 415
BspMI ACCTGC 1 cut(s) 1429
BspPI GGATC 3 cut(s) 499, 748, 1974
BspT107I GGYRCC 2 cut(s) 385, 1290
BspTI CTTAAG 1 cut(s) 1906
BspTNI GGTCTC 1 cut(s) 815
BsrGI TGTACA 1 cut(s) 1787
BsrI ACTGG 5 cut(s) 139, 935, 1195, 1452, 1758
BssECI CCNNGG 5 cut(s) 381, 645, 904, 1069, 1156
BssT1I CCWWGG 2 cut(s) 645, 904
Bst2UI CCWGG 4 cut(s) 383, 1070, 1158, 1809
Bst4CI ACNGT 4 cut(s) 148, 322, 730, 1586
Bst6I CTCTTC 2 cut(s) 981, 1734
BstAFI CTTAAG 1 cut(s) 1906
BstAPI GCANNNNNTGC 2 cut(s) 1114, 1948
BstAUI TGTACA 1 cut(s) 1787
BstC8I GCNNGC 1 cut(s) 1246
BstF5I GGATG 7 cut(s) 11, 163, 242, 481, 641, 1081, 1590
BstFNI CGCG 1 cut(s) 683
BstMWI GCNNNNNNNGC 4 cut(s) 846, 1114, 1948, 2089
BstNI CCWGG 4 cut(s) 383, 1070, 1158, 1809
BstPAI GACNNNNGTC 1 cut(s) 1780
BstSCI CCNGG 5 cut(s) 229, 381, 1068, 1156, 1807
BstSFI CTRYAG 2 cut(s) 411, 1084
BstUI CGCG 1 cut(s) 683
BstV1I GCAGC 4 cut(s) 411, 861, 928, 1914
BstV2I GAAGAC 3 cut(s) 81, 795, 927
BstX2I RGATCY 3 cut(s) 557, 765, 1966
BstXI CCANNNNNNTGG 4 cut(s) 1076, 1212, 1366, 1525
BstYI RGATCY 3 cut(s) 557, 765, 1966
BsuI GTATCC 1 cut(s) 1073
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 7 cut(s) 11, 163, 242, 481, 641, 1081, 1590
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 3 cut(s) 222, 318, 1708
BtuMI TCGCGA 1 cut(s) 683
BveI ACCTGC 1 cut(s) 1429
Cac8I GCNNGC 1 cut(s) 1246
CaiI CAGNNNCTG 2 cut(s) 941, 1313
Cfr13I GGNCC 2 cut(s) 792, 1060
Csp6I GTAC 5 cut(s) 9, 1291, 1391, 1560, 1788
CspCI CAANNNNNGTGG 2 cut(s) 711, 746
CviAII CATG 7 cut(s) 619, 1109, 1237, 1297, 1555, 1785, 1921
CviQI GTAC 5 cut(s) 9, 1291, 1391, 1560, 1788
Eam1104I CTCTTC 2 cut(s) 981, 1734
EarI CTCTTC 2 cut(s) 981, 1734
Eco130I CCWWGG 2 cut(s) 645, 904
Eco31I GGTCTC 1 cut(s) 815
Eco47I GGWCC 2 cut(s) 792, 1060
Eco57I CTGAAG 5 cut(s) 458, 939, 1556, 1758, 1902
Eco88I CYCGRG 1 cut(s) 1813
EcoRII CCWGG 4 cut(s) 381, 1068, 1156, 1807
EcoT14I CCWWGG 2 cut(s) 645, 904
EcoT22I ATGCAT 1 cut(s) 1380
ErhI CCWWGG 2 cut(s) 645, 904
FaeI CATG 7 cut(s) 622, 1112, 1240, 1300, 1558, 1788, 1924
FalI AAGNNNNNCTT 4 cut(s) 66, 98, 1823, 1855
FatI CATG 7 cut(s) 618, 1108, 1236, 1296, 1554, 1784, 1920
FauNDI CATATG 1 cut(s) 970
FbaI TGATCA 1 cut(s) 973
Fnu4HI GCNGC 4 cut(s) 425, 850, 942, 1903
FokI GGATG 7 cut(s) 18, 170, 249, 488, 628, 1088, 1577
Fsp4HI GCNGC 4 cut(s) 425, 850, 942, 1903
FspBI CTAG 7 cut(s) 215, 506, 570, 980, 1322, 1430, 1619
GluI GCNGC 4 cut(s) 425, 850, 942, 1903
GsuI CTGGAG 1 cut(s) 1212
HaeIII GGCC 1 cut(s) 23
HapII CCGG 2 cut(s) 24, 231
Hin1II CATG 7 cut(s) 622, 1112, 1240, 1300, 1558, 1788, 1924
HindIII AAGCTT 3 cut(s) 1572, 1721, 2090
HinfI GANTC 6 cut(s) 204, 497, 815, 930, 965, 1232
HpaII CCGG 2 cut(s) 24, 231
HphI GGTGA 4 cut(s) 1012, 1410, 1699, 1904
Hpy166II GTNNAC 5 cut(s) 144, 960, 1220, 1369, 1560
Hpy188I TCNGA 9 cut(s) 398, 438, 496, 562, 820, 865, 1338, 1536, 2036
Hpy8I GTNNAC 5 cut(s) 144, 960, 1220, 1369, 1560
HpyAV CCTTC 8 cut(s) 13, 163, 433, 440, 692, 1051, 1381, 1509
HpyCH4III ACNGT 4 cut(s) 148, 322, 730, 1586
HpyCH4V TGCA 7 cut(s) 355, 413, 427, 722, 1004, 1378, 1942
HpyF10VI GCNNNNNNNGC 4 cut(s) 846, 1114, 1948, 2089
Hsp92II CATG 7 cut(s) 622, 1112, 1240, 1300, 1558, 1788, 1924
KpnI GGTACC 1 cut(s) 1294
Ksp22I TGATCA 1 cut(s) 973
LmnI GCTCC 5 cut(s) 98, 110, 232, 1483, 2088
Lsp1109I GCAGC 4 cut(s) 411, 861, 928, 1914
LweI GCATC 3 cut(s) 201, 650, 1875
MaeI CTAG 7 cut(s) 215, 506, 570, 980, 1322, 1430, 1619
MaeIII GTNAC 7 cut(s) 220, 316, 547, 1048, 1099, 1399, 1705
MfeI CAATTG 2 cut(s) 1523, 1802
MflI RGATCY 3 cut(s) 557, 765, 1966
MlyI GAGTC 2 cut(s) 213, 974
MmeI TCCRAC 2 cut(s) 88, 130
Mph1103I ATGCAT 1 cut(s) 1380
MroXI GAANNNNTTC 1 cut(s) 831
MseI TTAA 2 cut(s) 84, 1907
MslI CAYNNNNRTG 2 cut(s) 953, 1285
MspCI CTTAAG 1 cut(s) 1906
MspI CCGG 2 cut(s) 24, 231
MspR9I CCNGG 5 cut(s) 231, 383, 1070, 1158, 1809
MunI CAATTG 2 cut(s) 1523, 1802
Mva1269I GAATGC 1 cut(s) 1934
MvaI CCWGG 4 cut(s) 383, 1070, 1158, 1809
MvnI CGCG 1 cut(s) 683
MwoI GCNNNNNNNGC 4 cut(s) 846, 1114, 1948, 2089
NciI CCSGG 1 cut(s) 231
NdeI CATATG 1 cut(s) 970
NlaIII CATG 7 cut(s) 622, 1112, 1240, 1300, 1558, 1788, 1924
NlaIV GGNNCC 7 cut(s) 379, 387, 580, 1292, 1823, 2022, 2084
NmuCI GTSAC 6 cut(s) 220, 316, 547, 1048, 1399, 1705
NruI TCGCGA 1 cut(s) 683
NsiI ATGCAT 1 cut(s) 1380
PaeR7I CTCGAG 1 cut(s) 1813
PaqCI CACCTGC 1 cut(s) 1429
PcsI WCGNNNNNNNCGW 1 cut(s) 1060
PctI GAATGC 1 cut(s) 1934
PdmI GAANNNNTTC 1 cut(s) 831
PfeI GAWTC 4 cut(s) 497, 815, 930, 1232
PflFI GACNNNGTC 2 cut(s) 608, 964
PfoI TCCNGGA 1 cut(s) 229
PkrI GCNGC 4 cut(s) 426, 851, 943, 1904
PleI GAGTC 2 cut(s) 212, 973
PpsI GAGTC 2 cut(s) 212, 973
PshAI GACNNNNGTC 1 cut(s) 1780
PsiI TTATAA 1 cut(s) 1181
Psp6I CCWGG 4 cut(s) 381, 1068, 1156, 1807
PspGI CCWGG 4 cut(s) 381, 1068, 1156, 1807
PspN4I GGNNCC 7 cut(s) 379, 387, 580, 1292, 1823, 2022, 2084
PspPI GGNCC 2 cut(s) 792, 1060
PspXI VCTCGAGB 1 cut(s) 1813
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 2 cut(s) 941, 1313
PsuI RGATCY 3 cut(s) 557, 765, 1966
PsyI GACNNNGTC 2 cut(s) 608, 964
RruI TCGCGA 1 cut(s) 683
RsaI GTAC 5 cut(s) 10, 1292, 1392, 1561, 1789
RsaNI GTAC 5 cut(s) 9, 1291, 1391, 1560, 1788
RseI CAYNNNNRTG 2 cut(s) 953, 1285
SaqAI TTAA 2 cut(s) 84, 1907
SatI GCNGC 4 cut(s) 425, 850, 942, 1903
Sau96I GGNCC 2 cut(s) 792, 1060
SchI GAGTC 2 cut(s) 213, 974
ScrFI CCNGG 5 cut(s) 231, 383, 1070, 1158, 1809
SfaNI GCATC 3 cut(s) 201, 650, 1875
SfcI CTRYAG 2 cut(s) 411, 1084
Sfr274I CTCGAG 1 cut(s) 1813
SinI GGWCC 2 cut(s) 792, 1060
SlaI CTCGAG 1 cut(s) 1813
SmiMI CAYNNNNRTG 2 cut(s) 953, 1285
SmlI CTYRAG 5 cut(s) 191, 1813, 1906, 1933, 1970
SmoI CTYRAG 5 cut(s) 191, 1813, 1906, 1933, 1970
SsiI CCGC 2 cut(s) 67, 750
SspI AATATT 1 cut(s) 2049
SspMI CTAG 7 cut(s) 215, 506, 570, 980, 1322, 1430, 1619
StyD4I CCNGG 5 cut(s) 229, 381, 1068, 1156, 1807
StyI CCWWGG 2 cut(s) 645, 904
TaaI ACNGT 4 cut(s) 148, 322, 730, 1586
TaqI TCGA 2 cut(s) 209, 1814
TaqII GACCGA 3 cut(s) 93, 839, 1077
TatI WGTACW 1 cut(s) 1787
TfiI GAWTC 4 cut(s) 497, 815, 930, 1232
Tru1I TTAA 2 cut(s) 84, 1907
Tru9I TTAA 2 cut(s) 84, 1907
TscAI CASTG 3 cut(s) 229, 325, 1708
TseFI GTSAC 6 cut(s) 220, 316, 547, 1048, 1399, 1705
TseI GCWGC 4 cut(s) 424, 849, 941, 1902
Tsp45I GTSAC 6 cut(s) 220, 316, 547, 1048, 1399, 1705
TspDTI ATGAA 9 cut(s) 197, 417, 620, 635, 900, 1245, 1253, 1543, 1676
TspGWI ACGGA 1 cut(s) 1069
TspRI CASTG 3 cut(s) 229, 325, 1708
Tth111I GACNNNGTC 2 cut(s) 608, 964
Vha464I CTTAAG 1 cut(s) 1906
VpaK11BI GGWCC 2 cut(s) 792, 1060
XapI RAATTY 8 cut(s) 293, 563, 1330, 1361, 1405, 1659, 1759, 2011
XbaI TCTAGA 1 cut(s) 1618
XcmI CCANNNNNNNNNTGG 3 cut(s) 146, 1030, 1525
XhoI CTCGAG 1 cut(s) 1813
XmnI GAANNNNTTC 1 cut(s) 831
XspI CTAG 7 cut(s) 215, 506, 570, 980, 1322, 1430, 1619
Zsp2I ATGCAT 1 cut(s) 1380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.