Rmu_sc0008904.1_g000005

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008904.1
OG0000039
Physical Location & Seq
Forward (+)
17023 .. 20104
3082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008904.1_g000005.1.cds

Sequence Viewer

Length: 2538 bp
atggatattaatccggtggagtttttcggaggtgctgttctaggaacagcattcagtgcactctatgctggcgttgaagatctgattgccaagaaccacctgttcagaaatctcttcaaaaacatccaatccgggctagacactctgaagccactcatggccgagatgactcagtgtaaccagcatctgtcttacacacagaacgatgagcttaaaggtttagaagcagtactgaaggttggcgaagaggttgttctaaagtgctcaaatgttagtcggtgggatctctacaggaagtacaaatatgccaccaaacttcttgcatgggaagaagatcttgaaagacagttgcagctgctgcgggtgcagggaatcagggatgggaagaagaccgcggtggtagtagagagcatagaggtttctgttgggactgtgaaggagggggtcaacaaaatttctactactctggaggaggtgaaccaacgcatgatggagaattttgtgatacaagaccaatctgctgataataaagcttggtgtgcagtacctgaacttccagaggttgtagttggattggaaactcctttaaaagatttgaagacaaagctccttgggaatgatggattctcaatgcttgtgctcactgctccaggtggatgtgggaaaactaccttggcaacaaacttttgcaaagaacaggatgtcaaagataaattcagcaaaaatatcttctttgtcactgtttcgaagaagtatagcttatattctattgtagaacaactataccgacacaaaggttcccaagttccttctctccgaaacgaagtgaatgctgttcagtggctgcaaaaattttggacgaatgcagaaaataaacctttactgttggtcctagatgatgtttggtctggatcagaatctcttcttgacaaatttgaatgcagaatggcaaatattaagattcttgtgacatcaagatctgaatttcccgcgttcagtcctccatatcatttagcaatgttgggttatgacgatgcaatgaaactttttcatcattcagcatctttgggatctaagagctctcatattccactatatatttcaagaaagatagttgagcgttgtaagggatttccacttgccattacagtggtgggcagatcgcttcgtgcacaacctctagagatgtggcaaaacagactaagtcaatgggctaaaggttcatctatttttgattctgagactgatttacttctttccctccaaagcagcttggatgctttggataaggaaagggctatcatcagagaatgtttcttggaccttggttcatttcctgaagacagagaaatccccgttgatgccctcattgatatatggtccgagttatatgatattgatgaagacacttcgtgtattgcaaacctctatgaactcaacaatcggagtcttgctaatcttatagacagaagggcatcgagcttggatggggaaggatattatggttaccactatgtcacccaacatgatgtgcttagggagctcgctatttatcactcgaaactagatccggtagagcatagagaaagattgatcatagacacatgtggaagcaatcttcccaagtggtggagggaacaaaagtatcaagttatgaaagctcgtcttctatctatatcagctgagtcttcaactttgaaatgcctcaacatgcatctgccagaaacagaggtactgatcttgaatatgcggtacttgaatgtgcgggacatgttgtatatacccgaatttgtggagaaaatggacaaattgaaggtactagtaatcacaggtgaggaggcccgggttccagttgtcttgcataattttcaagtactaagtcggttatccaatctaaagagaatcagattaaggagcatctcaatttcatccatagtcaagaactccatacaagtgaagagtctacggaagttgtctttgatcagatgtagtaccggaatcggttcagccaaacttgcccatgcttttccaaatctagaagagatacacatcaaacacggttcattattatttcacttgccaagtgatactaggacagtacttcgagggctatgtgatctgatttccctaaagaaggtcaccctcacagaagttcgagtatttcaagtatgggctttgcctgacgagattggaaatttggtcaatttacaagtattgaggctgaggtcatgtcctgatctttcagagcttccaaactcgatcaaaaacctcaagaagttgaactttcttggcatctttaattgcgaagaattccgcgagttacctgaatgcattggtcaaatgaggagtttaagaaagatcgacacgagatgttgcaggagattgacgactctgcctcgatcagtattggatttgaagcagttagaggaggtgacatgtgatgaagatacagaaagcttatggaaatccctgttgcccagtttcagagacagaaaccaagacatacgcatagtgattgggccgccaccattgcgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

845

Amino Acids

96.34

Weight (kDa)

7.76

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1629
AccI GTMKAC 1 cut(s) 1963
AccII CGCG 3 cut(s) 395, 992, 2316
AciI CCGC 8 cut(s) 361, 393, 395, 990, 1750, 1765, 2314, 2522
AclWI GGATC 4 cut(s) 291, 919, 1078, 1562
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 9 cut(s) 453, 496, 713, 851, 932, 983, 1787, 2194, 2309
AcuI CTGAAG 3 cut(s) 167, 254, 1359
AdeI CACNNNGTG 1 cut(s) 1413
AfaI GTAC 9 cut(s) 231, 299, 546, 1734, 1754, 1818, 1875, 1993, 2100
AfiI CCNNNNNNNGG 2 cut(s) 1629, 2134
AflIII ACRYGT 3 cut(s) 1604, 1770, 2435
AhlI ACTAGT 1 cut(s) 1819
AjnI CCWGG 1 cut(s) 649
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
Alw21I GWGCWC 6 cut(s) 61, 266, 642, 1082, 1174, 1545
Alw26I GTCTC 2 cut(s) 1235, 2481
Alw44I GTGCAC 2 cut(s) 57, 1170
AlwI GGATC 4 cut(s) 291, 919, 1078, 1562
AlwNI CAGNNNCTG 4 cut(s) 187, 358, 548, 844
Ama87I CYCGRG 1 cut(s) 1842
AoxI GGCC 3 cut(s) 159, 1839, 2519
ApaLI GTGCAC 2 cut(s) 57, 1170
ApeKI GCWGC 5 cut(s) 352, 355, 358, 844, 1269
ApoI RAATTY 9 cut(s) 453, 496, 713, 851, 932, 983, 1787, 2194, 2309
AseI ATTAAT 1 cut(s) 9
Asp700I GAANNNNTTC 2 cut(s) 921, 2002
AspS9I GGNCC 5 cut(s) 889, 1321, 1380, 1840, 2519
AsuC2I CCSGG 3 cut(s) 133, 1843, 1844
AsuHPI GGTGA 5 cut(s) 487, 1510, 1844, 2131, 2443
AsuII TTCGAA 1 cut(s) 746
AvaI CYCGRG 1 cut(s) 1842
AvaII GGWCC 3 cut(s) 889, 1321, 1380
BaeGI GKGCMC 2 cut(s) 61, 1174
BaeI ACNNNNGTAYC 2 cut(s) 1628, 1661
BanII GRGCYC 2 cut(s) 1082, 1545
BarI GAAGNNNNNNTAC 2 cut(s) 537, 569
BauI CACGAG 1 cut(s) 2365
BbsI GAAGAC 6 cut(s) 395, 605, 1347, 1410, 1658, 1680
Bbv12I GWGCWC 6 cut(s) 61, 266, 642, 1082, 1174, 1545
BbvCI CCTCAGC 1 cut(s) 2222
BbvI GCAGC 5 cut(s) 342, 345, 364, 831, 1281
BccI CCATC 4 cut(s) 374, 484, 614, 1481
BcgI CGANNNNNNTGC 2 cut(s) 812, 846
BciT130I CCWGG 1 cut(s) 651
BclI TGATCA 2 cut(s) 1593, 1980
BcnI CCSGG 3 cut(s) 133, 1843, 1844
BcoDI GTCTC 2 cut(s) 1235, 2481
BcuI ACTAGT 1 cut(s) 1819
BfaI CTAG 8 cut(s) 41, 137, 893, 1181, 1565, 1820, 2036, 2091
BfmI CTRYAG 1 cut(s) 289
BglII AGATCT 3 cut(s) 79, 334, 977
BisI GCNGC 6 cut(s) 353, 356, 359, 845, 1270, 2522
BlsI GCNGC 6 cut(s) 354, 357, 360, 846, 1271, 2523
BmcAI AGTACT 3 cut(s) 231, 1875, 2100
Bme1390I CCNGG 4 cut(s) 133, 651, 1843, 1844
Bme18I GGWCC 3 cut(s) 889, 1321, 1380
BmeT110I CYCGRG 1 cut(s) 1842
BmgT120I GGNCC 5 cut(s) 889, 1321, 1380, 1840, 2519
BmiI GGNNCC 2 cut(s) 799, 1848
BmrFI CCNGG 4 cut(s) 133, 651, 1843, 1844
BmrI ACTGGG 1 cut(s) 2472
BmsI GCATC 9 cut(s) 193, 1024, 1070, 1267, 1351, 1484, 1723, 1926, 2301
BmuI ACTGGG 1 cut(s) 2472
BpiI GAAGAC 6 cut(s) 395, 605, 1347, 1410, 1658, 1680
BpmI CTGGAG 2 cut(s) 488, 633
Bpu10I CCTNAGC 2 cut(s) 1535, 2222
Bpu14I TTCGAA 1 cut(s) 746
BpuEI CTTGAG 1 cut(s) 2255
BpuMI CCSGG 3 cut(s) 133, 1843, 1844
BsaBI GATNNNNATC 3 cut(s) 9, 916, 2048
BsaJI CCNNGG 5 cut(s) 393, 610, 672, 1324, 1842
BsaWI WCCGGW 3 cut(s) 13, 1570, 1994
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 2 cut(s) 1629, 2134
Bse1I ACTGG 2 cut(s) 1850, 2478
Bse3DI GCAATG 3 cut(s) 1023, 1044, 2528
Bse8I GATNNNNATC 3 cut(s) 9, 916, 2048
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 5 cut(s) 393, 610, 672, 1324, 1842
BseGI GGATG 7 cut(s) 123, 385, 662, 706, 1282, 1492, 1928
BseJI GATNNNNATC 3 cut(s) 9, 916, 2048
BseLI CCNNNNNNNGG 2 cut(s) 1629, 2134
BseMI GCAATG 3 cut(s) 1023, 1044, 2528
BseMII CTCAG 4 cut(s) 185, 1230, 1674, 2213
BseNI ACTGG 2 cut(s) 1850, 2478
BseRI GAGGAG 4 cut(s) 485, 1850, 2359, 2441
BseSI GKGCMC 2 cut(s) 61, 1174
BseXI GCAGC 5 cut(s) 342, 345, 364, 831, 1281
BsgI GTGCAG 2 cut(s) 386, 561
Bsh1236I CGCG 3 cut(s) 395, 992, 2316
BshFI GGCC 3 cut(s) 161, 1841, 2521
BsiHKAI GWGCWC 6 cut(s) 61, 266, 642, 1082, 1174, 1545
BsiHKCI CYCGRG 1 cut(s) 1842
BsiSI CCGG 5 cut(s) 14, 132, 1571, 1843, 1995
BslFI GGGAC 2 cut(s) 442, 1781
BslI CCNNNNNNNGG 2 cut(s) 1629, 2134
BsmAI GTCTC 2 cut(s) 1235, 2481
BsmFI GGGAC 2 cut(s) 442, 1781
BsmI GAATGC 5 cut(s) 50, 835, 868, 944, 2333
BsnI GGCC 3 cut(s) 161, 1841, 2521
BsoBI CYCGRG 1 cut(s) 1842
Bsp119I TTCGAA 1 cut(s) 746
Bsp1286I GDGCHC 6 cut(s) 61, 266, 642, 1082, 1174, 1545
BspACI CCGC 8 cut(s) 361, 393, 395, 990, 1750, 1765, 2314, 2522
BspANI GGCC 3 cut(s) 161, 1841, 2521
BspCNI CTCAG 4 cut(s) 184, 1231, 1675, 2214
BspFNI CGCG 3 cut(s) 395, 992, 2316
BspLI GGNNCC 2 cut(s) 799, 1848
BspPI GGATC 4 cut(s) 291, 919, 1078, 1562
BspT104I TTCGAA 1 cut(s) 746
BsrDI GCAATG 3 cut(s) 1023, 1044, 2528
BsrI ACTGG 2 cut(s) 1850, 2478
BssECI CCNNGG 5 cut(s) 393, 610, 672, 1324, 1842
BssSI CACGAG 1 cut(s) 2365
BssT1I CCWWGG 3 cut(s) 610, 672, 1324
Bst2BI CACGAG 1 cut(s) 2365
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 7 cut(s) 348, 433, 742, 885, 1150, 2060, 2098
Bst6I CTCTTC 5 cut(s) 119, 240, 927, 1952, 2034
BstAPI GCANNNNNTGC 3 cut(s) 56, 65, 358
BstBI TTCGAA 1 cut(s) 746
BstC8I GCNNGC 2 cut(s) 70, 1545
BstDEI CTNAG 8 cut(s) 171, 1074, 1202, 1239, 1535, 1683, 1877, 2222
BstDSI CCRYGG 1 cut(s) 393
BstEII GGTNACC 2 cut(s) 1505, 2137
BstENI CCTNNNNNAGG 1 cut(s) 2132
BstF5I GGATG 7 cut(s) 123, 385, 662, 706, 1282, 1492, 1928
BstFNI CGCG 3 cut(s) 395, 992, 2316
BstMAI GTCTC 2 cut(s) 1235, 2481
BstMWI GCNNNNNNNGC 8 cut(s) 56, 65, 358, 364, 539, 1540, 2015, 2530
BstNI CCWGG 1 cut(s) 651
BstNSI RCATGY 4 cut(s) 1608, 1714, 1774, 2439
BstPI GGTNACC 2 cut(s) 1505, 2137
BstSCI CCNGG 4 cut(s) 131, 649, 1841, 1842
BstSFI CTRYAG 1 cut(s) 289
BstSLI GKGCMC 2 cut(s) 61, 1174
BstUI CGCG 3 cut(s) 395, 992, 2316
BstV1I GCAGC 5 cut(s) 342, 345, 364, 831, 1281
BstV2I GAAGAC 6 cut(s) 395, 605, 1347, 1410, 1658, 1680
BstX2I RGATCY 6 cut(s) 79, 283, 334, 977, 1070, 1567
BstXI CCANNNNNNTGG 1 cut(s) 1150
BstYI RGATCY 6 cut(s) 79, 283, 334, 977, 1070, 1567
BsuRI GGCC 3 cut(s) 161, 1841, 2521
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 7 cut(s) 123, 385, 662, 706, 1282, 1492, 1928
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 6 cut(s) 61, 179, 642, 738, 845, 1155
Cac8I GCNNGC 2 cut(s) 70, 1545
CaiI CAGNNNCTG 4 cut(s) 187, 358, 548, 844
Cfr13I GGNCC 5 cut(s) 889, 1321, 1380, 1840, 2519
Cfr42I CCGCGG 1 cut(s) 396
Cfr9I CCCGGG 1 cut(s) 1842
Csp6I GTAC 9 cut(s) 230, 298, 545, 1733, 1753, 1817, 1874, 1992, 2099
CviQI GTAC 9 cut(s) 230, 298, 545, 1733, 1753, 1817, 1874, 1992, 2099
DdeI CTNAG 8 cut(s) 171, 1074, 1202, 1239, 1535, 1683, 1877, 2222
DraI TTTAAA 1 cut(s) 588
DraIII CACNNNGTG 1 cut(s) 1413
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 5 cut(s) 119, 240, 927, 1952, 2034
EarI CTCTTC 5 cut(s) 119, 240, 927, 1952, 2034
Ecl136II GAGCTC 2 cut(s) 1080, 1543
Eco130I CCWWGG 3 cut(s) 610, 672, 1324
Eco24I GRGCYC 2 cut(s) 1082, 1545
Eco47I GGWCC 3 cut(s) 889, 1321, 1380
Eco53kI GAGCTC 2 cut(s) 1080, 1543
Eco57I CTGAAG 3 cut(s) 167, 254, 1359
Eco88I CYCGRG 1 cut(s) 1842
Eco91I GGTNACC 2 cut(s) 1505, 2137
EcoICRI GAGCTC 2 cut(s) 1080, 1543
EcoNI CCTNNNNNAGG 1 cut(s) 2132
EcoO65I GGTNACC 2 cut(s) 1505, 2137
EcoRI GAATTC 1 cut(s) 2309
EcoRII CCWGG 1 cut(s) 649
EcoT14I CCWWGG 3 cut(s) 610, 672, 1324
EcoT22I ATGCAT 2 cut(s) 1716, 2333
EcoT38I GRGCYC 2 cut(s) 1082, 1545
ErhI CCWWGG 3 cut(s) 610, 672, 1324
FalI AAGNNNNNCTT 8 cut(s) 321, 353, 743, 775, 1650, 1682, 2267, 2299
FaqI GGGAC 2 cut(s) 442, 1781
FauI CCCGC 3 cut(s) 354, 997, 1758
FbaI TGATCA 2 cut(s) 1593, 1980
FblI GTMKAC 1 cut(s) 1963
Fnu4HI GCNGC 6 cut(s) 353, 356, 359, 845, 1270, 2522
FokI GGATG 7 cut(s) 110, 392, 669, 713, 1289, 1499, 1915
FriOI GRGCYC 2 cut(s) 1082, 1545
Fsp4HI GCNGC 6 cut(s) 353, 356, 359, 845, 1270, 2522
FspBI CTAG 8 cut(s) 41, 137, 893, 1181, 1565, 1820, 2036, 2091
GluI GCNGC 6 cut(s) 353, 356, 359, 845, 1270, 2522
GsuI CTGGAG 2 cut(s) 488, 633
HaeIII GGCC 3 cut(s) 161, 1841, 2521
HapII CCGG 5 cut(s) 14, 132, 1571, 1843, 1995
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 2 cut(s) 531, 2455
HpaII CCGG 5 cut(s) 14, 132, 1571, 1843, 1995
HphI GGTGA 5 cut(s) 487, 1510, 1844, 2131, 2443
Hpy166II GTNNAC 5 cut(s) 59, 448, 478, 1172, 1964
Hpy8I GTNNAC 5 cut(s) 59, 448, 478, 1172, 1964
HpyAV CCTTC 7 cut(s) 229, 430, 819, 1464, 1487, 1807, 2128
HpyCH4III ACNGT 7 cut(s) 348, 433, 742, 885, 1150, 2060, 2098
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 65, 358, 364, 539, 1540, 2015, 2530
HpyF3I CTNAG 8 cut(s) 171, 1074, 1202, 1239, 1535, 1683, 1877, 2222
Ksp22I TGATCA 2 cut(s) 1593, 1980
KspI CCGCGG 1 cut(s) 396
LmnI GCTCC 4 cut(s) 612, 652, 1540, 1914
Lsp1109I GCAGC 5 cut(s) 342, 345, 364, 831, 1281
LweI GCATC 9 cut(s) 193, 1024, 1070, 1267, 1351, 1484, 1723, 1926, 2301
MaeI CTAG 8 cut(s) 41, 137, 893, 1181, 1565, 1820, 2036, 2091
MaeIII GTNAC 8 cut(s) 176, 736, 967, 1505, 1516, 2137, 2319, 2431
MflI RGATCY 6 cut(s) 79, 283, 334, 977, 1070, 1567
MhlI GDGCHC 6 cut(s) 61, 266, 642, 1082, 1174, 1545
MlyI GAGTC 5 cut(s) 163, 1456, 1694, 1969, 2383
MmeI TCCRAC 1 cut(s) 550
Mph1103I ATGCAT 2 cut(s) 1716, 2333
MroXI GAANNNNTTC 2 cut(s) 921, 2002
MseI TTAA 7 cut(s) 9, 213, 587, 957, 1910, 2298, 2351
MslI CAYNNNNRTG 2 cut(s) 1148, 1952
MspA1I CMGCKG 3 cut(s) 355, 395, 1682
MspI CCGG 5 cut(s) 14, 132, 1571, 1843, 1995
MspR9I CCNGG 4 cut(s) 133, 651, 1843, 1844
Mva1269I GAATGC 5 cut(s) 50, 835, 868, 944, 2333
MvaI CCWGG 1 cut(s) 651
MvnI CGCG 3 cut(s) 395, 992, 2316
MwoI GCNNNNNNNGC 8 cut(s) 56, 65, 358, 364, 539, 1540, 2015, 2530
NciI CCSGG 3 cut(s) 133, 1843, 1844
NlaIV GGNNCC 2 cut(s) 799, 1848
NmeAIII GCCGAG 1 cut(s) 187
NmuCI GTSAC 5 cut(s) 736, 967, 1516, 2137, 2431
NsiI ATGCAT 2 cut(s) 1716, 2333
NspI RCATGY 4 cut(s) 1608, 1714, 1774, 2439
NspV TTCGAA 1 cut(s) 746
PciI ACATGT 3 cut(s) 1604, 1770, 2435
PctI GAATGC 5 cut(s) 50, 835, 868, 944, 2333
PdmI GAANNNNTTC 2 cut(s) 921, 2002
PfeI GAWTC 7 cut(s) 372, 624, 917, 961, 1235, 1902, 1998
PflFI GACNNNGTC 1 cut(s) 1203
PflMI CCANNNNNTGG 1 cut(s) 1629
PkrI GCNGC 6 cut(s) 354, 357, 360, 846, 1271, 2523
PleI GAGTC 5 cut(s) 163, 1455, 1693, 1968, 2383
PpsI GAGTC 5 cut(s) 163, 1455, 1693, 1968, 2383
PscI ACATGT 3 cut(s) 1604, 1770, 2435
PshBI ATTAAT 1 cut(s) 9
Psp124BI GAGCTC 2 cut(s) 1082, 1545
Psp6I CCWGG 1 cut(s) 649
PspEI GGTNACC 2 cut(s) 1505, 2137
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 2 cut(s) 799, 1848
PspPI GGNCC 5 cut(s) 889, 1321, 1380, 1840, 2519
PstNI CAGNNNCTG 4 cut(s) 187, 358, 548, 844
PsuI RGATCY 6 cut(s) 79, 283, 334, 977, 1070, 1567
PsyI GACNNNGTC 1 cut(s) 1203
PvuII CAGCTG 2 cut(s) 355, 1682
RsaI GTAC 9 cut(s) 231, 299, 546, 1734, 1754, 1818, 1875, 1993, 2100
RsaNI GTAC 9 cut(s) 230, 298, 545, 1733, 1753, 1817, 1874, 1992, 2099
RseI CAYNNNNRTG 2 cut(s) 1148, 1952
SacI GAGCTC 2 cut(s) 1082, 1545
SacII CCGCGG 1 cut(s) 396
SaqAI TTAA 7 cut(s) 9, 213, 587, 957, 1910, 2298, 2351
SatI GCNGC 6 cut(s) 353, 356, 359, 845, 1270, 2522
Sau96I GGNCC 5 cut(s) 889, 1321, 1380, 1840, 2519
ScaI AGTACT 3 cut(s) 231, 1875, 2100
SchI GAGTC 5 cut(s) 163, 1456, 1694, 1969, 2383
ScrFI CCNGG 4 cut(s) 133, 651, 1843, 1844
SduI GDGCHC 6 cut(s) 61, 266, 642, 1082, 1174, 1545
SfaNI GCATC 9 cut(s) 193, 1024, 1070, 1267, 1351, 1484, 1723, 1926, 2301
SfcI CTRYAG 1 cut(s) 289
Sfr303I CCGCGG 1 cut(s) 396
SfuI TTCGAA 1 cut(s) 746
SgrBI CCGCGG 1 cut(s) 396
SinI GGWCC 3 cut(s) 889, 1321, 1380
SmaI CCCGGG 1 cut(s) 1844
SmiMI CAYNNNNRTG 2 cut(s) 1148, 1952
SmlI CTYRAG 1 cut(s) 2270
SmoI CTYRAG 1 cut(s) 2270
SpeI ACTAGT 1 cut(s) 1819
SsiI CCGC 8 cut(s) 361, 393, 395, 990, 1750, 1765, 2314, 2522
SspI AATATT 1 cut(s) 955
SspMI CTAG 8 cut(s) 41, 137, 893, 1181, 1565, 1820, 2036, 2091
SstI GAGCTC 2 cut(s) 1082, 1545
StyD4I CCNGG 4 cut(s) 131, 649, 1841, 1842
StyI CCWWGG 3 cut(s) 610, 672, 1324
TaaI ACNGT 7 cut(s) 348, 433, 742, 885, 1150, 2060, 2098
TaqI TCGA 8 cut(s) 746, 1478, 1559, 2104, 2155, 2258, 2361, 2398
TatI WGTACW 4 cut(s) 229, 297, 1873, 2098
TauI GCSGC 1 cut(s) 2524
TfiI GAWTC 7 cut(s) 372, 624, 917, 961, 1235, 1902, 1998
Tru1I TTAA 7 cut(s) 9, 213, 587, 957, 1910, 2298, 2351
Tru9I TTAA 7 cut(s) 9, 213, 587, 957, 1910, 2298, 2351
TscAI CASTG 6 cut(s) 61, 179, 649, 745, 845, 1155
TseFI GTSAC 5 cut(s) 736, 967, 1516, 2137, 2431
TseI GCWGC 5 cut(s) 352, 355, 358, 844, 1269
Tsp45I GTSAC 5 cut(s) 736, 967, 1516, 2137, 2431
TspGWI ACGGA 1 cut(s) 1981
TspMI CCCGGG 1 cut(s) 1842
TspRI CASTG 6 cut(s) 61, 179, 649, 745, 845, 1155
Tth111I GACNNNGTC 1 cut(s) 1203
Van91I CCANNNNNTGG 1 cut(s) 1629
VneI GTGCAC 2 cut(s) 57, 1170
VpaK11BI GGWCC 3 cut(s) 889, 1321, 1380
VspI ATTAAT 1 cut(s) 9
XagI CCTNNNNNAGG 1 cut(s) 2132
XapI RAATTY 9 cut(s) 453, 496, 713, 851, 932, 983, 1787, 2194, 2309
XbaI TCTAGA 2 cut(s) 1180, 2035
XceI RCATGY 4 cut(s) 1608, 1714, 1774, 2439
XcmI CCANNNNNNNNNTGG 1 cut(s) 1150
XmaI CCCGGG 1 cut(s) 1842
XmiI GTMKAC 1 cut(s) 1963
XmnI GAANNNNTTC 2 cut(s) 921, 2002
XspI CTAG 8 cut(s) 41, 137, 893, 1181, 1565, 1820, 2036, 2091
ZrmI AGTACT 3 cut(s) 231, 1875, 2100
Zsp2I ATGCAT 2 cut(s) 1716, 2333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.