Rroxscaffold_2G00139040

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000039
Physical Location & Seq
Reverse (-)
77311077 .. 77316078
5002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139040.1

Sequence Viewer

Length: 2562 bp
ATGGCCAATCCAGTGGATGTTTTCGCCGGGGCTGGTGGAGGATTACTATTCAATGTGCTCTATGATGGCCTCAAGGAGCTGACCACCAAGTATGTGCTGTTCAAACACGTCCTCAAAAGCGTCAAATCCACACTCGAATCTCTGGAGCAAGTGGTTCAAAACATAGCACGACTTAACGAGGATCTGGATCGCCCGGAGGAAGAACTAGCGGGTCTAAAAACCCAACTAGATGAGGGTGAAGTGCTCGTTGCCAAGTGCGGCAAGGTTCGTGTGTGGAGTGTGTACAAGAAGTACAAGTACTCCAGGAAACTTCTTGGATGGAATGACAGTCTTAAAGAACAGTTGGAGATGCTCAAAGTTCAGGCAATAAGAGATGGGAAGGAGACCCTGACAACGGTGAAGAGAACAGAGAAGACTGTGAGCCAAATCAAATCGACCAGTTTCAGTATAAAGGAGGGAGTGGAGCAAATTGAGACCAACACTGCAAATCTACAGGTGGTGGTGAGCCGAGTGGAAGCGAGAGTTTCGAATATAGAGGCTGGGATAAAGCAGATACAACCGGAAGCTAGAATTGAAGCTTGGTGTGCAGTACCTGAACTTCCAACTCTTACAGTTGGATTGGATGGGCCTTTGAACGAACTGAAGATGAAGTTGTTCAACAATGGAGTGCCAATGGTTGTGCTGACCGCTCCCGGAGGATGTGGAAAAACCACTTTGGCAACAAAGTTCTGTCAAGATGAGCAAGTCCAAGAGAAATTCAAGAACAATATTTTTTTTGTCACTGTTTCCAAAACGCCAAACTTCTACCAAATTGTACAAGAGCTATACCGAAGCAAGGGTAACCAGACACCTACTTTTAAAGGTGACGAAGATGCACTCAAGTGGCTGCAAAAATTTCTGAGGGAAGAAGGACAAAACCCTTTACTGTTGGTCTTGGATGATGTTTGGTCTGGATCAGACTCTTTACTTGCAAAGTTTGAATTCGAAATGCAAGATTACAAAGTTCTAGTGACATCAAGATCTGAATTTCCGAGATATGGCTCTTATGCGTTGCAGTCATTGGATTTTGACAATGCAATGAAACTCTTTCATCATGCAGCATCCTTGGGAGAAAGAAGTTTACATATTCCACCAGCTATATCAAGACAGGTAGTAGAGGGCTGTAAAGGATTTCCACTTGCTATAACAGTTGCCGGCAAATCACTTTGCGGACAGCCTATAGAGATTTGGCAGAAAAGACTCATTGACTGGTCCAAATGTTCTTCGATTCTTGATTTCGAGACTCAGTTGCGTCTTTGCCTCCGAACCAGTTTAGATGTCTTGAATAGGGAAATGAGTATGGTCAAAGAATGTTTCTTAGACCTAGGTTCATTTCCTGAAGATCAAAGAATCCCTGTTGCTGCCCTCATTGATATCTGGACTGAGTCTTACGGTTCACTGGATGAAGACATTTTGTGTGTTGCAAACCTCCACCAGATCACCAACCGAAGTCTAGCTAATCTTGTAGTCACAAGGAAGGATCAGCTGCAGGGGGATGGATACTACGGTGAACATTTTGTTACTCAGCATGATCTGCTTAGAGAGCTGGCTATCTATGAGACAAGACAAGAGGACCCCGGACATAGAGAAAGACTAATTATAAACATATCTAAAGACAATTTTCCCAAGTGGTGGAGTGAACAGAAGTATCAATGCATGAAGGCTCGCCTGTTATCTATCTCAACTGATGGAGTGTTTTCAACAAAATGGCACGACATGGACCTACCAGTAGCTGAGGTTCTAGTCTTGAATTTTCAGACCAAGAACTATGCATTACCCCAATTTGTGGAGAAAATGGTTAAGTTGAAGGTACTGGTAGTCACAAATTATGGTATTGTGCCTTCAGAATTAACAAATTTCGAAATACTGTGTACATCATCAAATTTGAAGAGAATGAGATTGGAACGCATCTCAATTCCATCCATAGCCAAGCACCCCATGCAATTGAATGGTCTCCAGAAGATTTCTTTATTCATGTGTAAGATTGGTCAAGCTTTCAGCAATGGGTCAATCCAATTTTCACATGCATGGCCAAATCTAGTGGAAGTGGACATTGACTATTGCAATGATTTGGTGGCATTGCCTGCTGACACCAGTGATTTGATTCATCTAAAGAAGCTCAGCATCACCAACTGTCATAAGCTACTTGCCTTGCCTGAAGATATTGGAAAGCTGGCCAAATTAGAATTGTTGAGGCTAAGGTCTTGTACAGGCTTAGCAAAGTTGCCAGGTTCGGCTGGGAACCTCAAGATGCTAAAATCTCTTGATATATCTTACTGCTTCAGCATTAAGGAGTTGCCTGAAGACTTTGGTGAATTGCGCAGCTTAAGAGAGCTTAACATGAGAGACTGCTCAAGATTGCAAGAGCTGCCTCTATCAGTTTCAAATCTGGAGCATTTGGAAGTGATATGTGATGATGAGACACAAAGCTTATGGCAACCCTTCTTACCTATCGAAGGCACACACATAGTGGTGGCCAAGGAGAATATCAACCTAAATTGGCTCCCCAAATTTCAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

853

Amino Acids

96.67

Weight (kDa)

6.11

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 6 - 138 1.2e-25 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 210 - 342 9.1e-17 NB-ARC domain
LRR_14 PF23598 710 - 771 8.5e-07 Leucine-rich repeat region
LRR_14 PF23598 760 - 820 1.7e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1640
Acc16I TGCGCA 1 cut(s) 2360
AccB7I CCANNNNNTGG 2 cut(s) 1671, 1825
AccBSI CCGCTC 1 cut(s) 689
AciI CCGC 4 cut(s) 209, 258, 687, 1209
AclWI GGATC 4 cut(s) 189, 195, 961, 1527
AcoI YGGCCR 4 cut(s) 3, 2069, 2214, 2514
AcsI RAATTY 8 cut(s) 755, 893, 980, 1025, 1789, 1894, 1921, 2549
AcuI CTGAAG 6 cut(s) 662, 1398, 1866, 2217, 2305, 2361
AdeI CACNNNGTG 1 cut(s) 2509
AfaI GTAC 8 cut(s) 284, 293, 299, 591, 816, 1851, 1912, 2248
AfiI CCNNNNNNNGG 6 cut(s) 394, 835, 1037, 1671, 1825, 2495
AflII CTTAAG 1 cut(s) 2365
AflIII ACRYGT 1 cut(s) 106
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 2 cut(s) 302, 2266
AjuI GAANNNNNNNTTGG 2 cut(s) 562, 594
AleI CACNNNNGTG 1 cut(s) 880
Alw21I GWGCWC 2 cut(s) 60, 246
Alw26I GTCTC 7 cut(s) 377, 467, 1274, 1592, 1997, 2379, 2453
AlwI GGATC 4 cut(s) 189, 195, 961, 1527
AlwNI CAGNNNCTG 2 cut(s) 593, 1772
AoxI GGCC 6 cut(s) 3, 67, 626, 2069, 2214, 2514
ApeKI GCWGC 6 cut(s) 886, 1097, 1400, 1525, 2361, 2407
ApoI RAATTY 8 cut(s) 755, 893, 980, 1025, 1789, 1894, 1921, 2549
Asp700I GAANNNNTTC 1 cut(s) 653
AspA2I CCTAGG 1 cut(s) 1363
AspLEI GCGC 1 cut(s) 2361
AspS9I GGNCC 4 cut(s) 626, 1251, 1612, 1759
AsuC2I CCSGG 4 cut(s) 28, 194, 693, 1617
AsuHPI GGTGA 8 cut(s) 248, 409, 514, 875, 1471, 1559, 2158, 2363
AsuII TTCGAA 3 cut(s) 527, 984, 1899
AvaII GGWCC 3 cut(s) 1251, 1612, 1759
AvrII CCTAGG 1 cut(s) 1363
BaeI ACNNNNGTAYC 4 cut(s) 1531, 1564, 1670, 1703
BalI TGGCCA 4 cut(s) 5, 2071, 2216, 2516
BarI GAAGNNNNNNTAC 6 cut(s) 281, 313, 582, 614, 1864, 1896
BbsI GAAGAC 3 cut(s) 419, 1452, 2349
Bbv12I GWGCWC 2 cut(s) 60, 246
BbvCI CCTCAGC 1 cut(s) 1773
BbvI GCAGC 6 cut(s) 873, 1109, 1387, 1512, 2373, 2394
BccI CCATC 7 cut(s) 59, 312, 368, 617, 1529, 1721, 1966
BciT130I CCWGG 2 cut(s) 304, 2268
BciVI GTATCC 1 cut(s) 1532
BcnI CCSGG 4 cut(s) 28, 194, 693, 1617
BcoDI GTCTC 7 cut(s) 377, 467, 1274, 1592, 1997, 2379, 2453
BfaI CTAG 8 cut(s) 206, 227, 567, 1007, 1364, 1493, 1781, 2078
BfmI CTRYAG 3 cut(s) 491, 1218, 1526
BfrI CTTAAG 1 cut(s) 2365
BfuI GTATCC 1 cut(s) 1532
BglII AGATCT 1 cut(s) 1019
BisI GCNGC 7 cut(s) 259, 887, 1098, 1401, 1526, 2362, 2408
BlnI CCTAGG 1 cut(s) 1363
BlpI GCTNAGC 2 cut(s) 2159, 2254
BlsI GCNGC 7 cut(s) 260, 888, 1099, 1402, 1527, 2363, 2409
BmcAI AGTACT 1 cut(s) 299
Bme1390I CCNGG 6 cut(s) 28, 194, 304, 693, 1617, 2268
Bme18I GGWCC 3 cut(s) 1251, 1612, 1759
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 4 cut(s) 626, 1251, 1612, 1759
BmiI GGNNCC 3 cut(s) 1614, 2282, 2543
BmrFI CCNGG 6 cut(s) 28, 194, 304, 693, 1617, 2268
BmsI GCATC 6 cut(s) 339, 862, 1109, 1956, 2172, 2280
BpiI GAAGAC 3 cut(s) 419, 1452, 2349
BpmI CTGGAG 4 cut(s) 164, 286, 1979, 2450
Bpu10I CCTNAGC 2 cut(s) 1773, 2237
Bpu1102I GCTNAGC 2 cut(s) 2159, 2254
Bpu14I TTCGAA 3 cut(s) 527, 984, 1899
BpuEI CTTGAG 4 cut(s) 56, 863, 2270, 2377
BpuMI CCSGG 4 cut(s) 28, 194, 693, 1617
BsaBI GATNNNNATC 1 cut(s) 186
BsaI GGTCTC 3 cut(s) 377, 467, 1997
BsaJI CCNNGG 5 cut(s) 27, 1104, 1363, 1615, 2517
BsaWI WCCGGW 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 6 cut(s) 394, 835, 1037, 1671, 1825, 2495
Bse118I RCCGGY 1 cut(s) 1193
Bse1I ACTGG 8 cut(s) 11, 438, 1253, 1308, 1443, 1766, 1857, 2133
Bse3DI GCAATG 4 cut(s) 1083, 2047, 2110, 2117
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 2 cut(s) 304, 2268
BseDI CCNNGG 5 cut(s) 27, 1104, 1363, 1615, 2517
BseGI GGATG 9 cut(s) 22, 323, 628, 704, 943, 1100, 1447, 1540, 1958
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 6 cut(s) 394, 835, 1037, 1671, 1825, 2495
BseMI GCAATG 4 cut(s) 1083, 2047, 2110, 2117
BseMII CTCAG 6 cut(s) 890, 1298, 1413, 1577, 1764, 2173
BseNI ACTGG 8 cut(s) 11, 438, 1253, 1308, 1443, 1766, 1857, 2133
BseXI GCAGC 6 cut(s) 873, 1109, 1387, 1512, 2373, 2394
BseYI CCCAGC 2 cut(s) 539, 2276
BsgI GTGCAG 1 cut(s) 606
BshFI GGCC 6 cut(s) 5, 69, 628, 2071, 2216, 2516
BsiHKAI GWGCWC 2 cut(s) 60, 246
BsiSI CCGG 6 cut(s) 27, 194, 560, 693, 1194, 1617
BslI CCNNNNNNNGG 6 cut(s) 394, 835, 1037, 1671, 1825, 2495
BsmAI GTCTC 7 cut(s) 377, 467, 1274, 1592, 1997, 2379, 2453
BsnI GGCC 6 cut(s) 5, 69, 628, 2071, 2216, 2516
Bso31I GGTCTC 3 cut(s) 377, 467, 1997
Bsp119I TTCGAA 3 cut(s) 527, 984, 1899
Bsp1286I GDGCHC 2 cut(s) 60, 246
Bsp1407I TGTACA 4 cut(s) 282, 814, 1910, 2246
Bsp143I GATC 8 cut(s) 181, 187, 953, 1019, 1381, 1476, 1519, 1570
Bsp1720I GCTNAGC 2 cut(s) 2159, 2254
BspACI CCGC 4 cut(s) 209, 258, 687, 1209
BspANI GGCC 6 cut(s) 5, 69, 628, 2071, 2216, 2516
BspCNI CTCAG 6 cut(s) 891, 1297, 1414, 1576, 1765, 2172
BspLI GGNNCC 3 cut(s) 1614, 2282, 2543
BspMAI CTGCAG 1 cut(s) 1530
BspPI GGATC 4 cut(s) 189, 195, 961, 1527
BspT104I TTCGAA 3 cut(s) 527, 984, 1899
BspTI CTTAAG 1 cut(s) 2365
BspTNI GGTCTC 3 cut(s) 377, 467, 1997
BsrBI CCGCTC 1 cut(s) 689
BsrDI GCAATG 4 cut(s) 1083, 2047, 2110, 2117
BsrFI RCCGGY 1 cut(s) 1193
BsrGI TGTACA 4 cut(s) 282, 814, 1910, 2246
BsrI ACTGG 8 cut(s) 11, 438, 1253, 1308, 1443, 1766, 1857, 2133
BssAI RCCGGY 1 cut(s) 1193
BssECI CCNNGG 5 cut(s) 27, 1104, 1363, 1615, 2517
BssMI GATC 8 cut(s) 181, 187, 953, 1019, 1381, 1476, 1519, 1570
BssT1I CCWWGG 3 cut(s) 1104, 1363, 2517
Bst2UI CCWGG 2 cut(s) 304, 2268
Bst6I CTCTTC 2 cut(s) 395, 1922
BstAFI CTTAAG 1 cut(s) 2365
BstAPI GCANNNNNTGC 4 cut(s) 1573, 1978, 2123, 2407
BstAUI TGTACA 4 cut(s) 282, 814, 1910, 2246
BstBI TTCGAA 3 cut(s) 527, 984, 1899
BstC8I GCNNGC 5 cut(s) 1195, 1587, 1705, 2124, 2214
BstEII GGTNACC 1 cut(s) 839
BstENI CCTNNNNNAGG 1 cut(s) 2493
BstF5I GGATG 9 cut(s) 22, 323, 628, 704, 943, 1100, 1447, 1540, 1958
BstHHI GCGC 1 cut(s) 2361
BstKTI GATC 8 cut(s) 184, 190, 956, 1022, 1384, 1479, 1522, 1573
BstMAI GTCTC 7 cut(s) 377, 467, 1274, 1592, 1997, 2379, 2453
BstMBI GATC 8 cut(s) 181, 187, 953, 1019, 1381, 1476, 1519, 1570
BstMWI GCNNNNNNNGC 6 cut(s) 584, 1573, 1582, 1978, 2123, 2407
BstNI CCWGG 2 cut(s) 304, 2268
BstNSI RCATGY 1 cut(s) 2066
BstPI GGTNACC 1 cut(s) 839
BstSCI CCNGG 6 cut(s) 26, 192, 302, 691, 1615, 2266
BstSFI CTRYAG 3 cut(s) 491, 1218, 1526
BstV1I GCAGC 6 cut(s) 873, 1109, 1387, 1512, 2373, 2394
BstV2I GAAGAC 3 cut(s) 419, 1452, 2349
BstX2I RGATCY 2 cut(s) 181, 1019
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 2 cut(s) 181, 1019
BsuI GTATCC 1 cut(s) 1532
BsuRI GGCC 6 cut(s) 5, 69, 628, 2071, 2216, 2516
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 9 cut(s) 22, 323, 628, 704, 943, 1100, 1447, 1540, 1958
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 5 cut(s) 18, 480, 780, 1436, 2140
Cac8I GCNNGC 5 cut(s) 1195, 1587, 1705, 2124, 2214
CaiI CAGNNNCTG 2 cut(s) 593, 1772
CfoI GCGC 1 cut(s) 2361
Cfr10I RCCGGY 1 cut(s) 1193
Cfr13I GGNCC 4 cut(s) 626, 1251, 1612, 1759
CseI GACGC 2 cut(s) 109, 1280
Csp6I GTAC 8 cut(s) 283, 292, 298, 590, 815, 1850, 1911, 2247
CspCI CAANNNNNGTGG 2 cut(s) 2061, 2096
CviAII CATG 9 cut(s) 1094, 1568, 1696, 1756, 1978, 2014, 2063, 2067, 2380
CviQI GTAC 8 cut(s) 283, 292, 298, 590, 815, 1850, 1911, 2247
DpnI GATC 8 cut(s) 183, 189, 955, 1021, 1383, 1478, 1521, 1572
DpnII GATC 8 cut(s) 181, 187, 953, 1019, 1381, 1476, 1519, 1570
DraI TTTAAA 1 cut(s) 859
DraIII CACNNNGTG 1 cut(s) 2509
EaeI YGGCCR 4 cut(s) 3, 2069, 2214, 2514
Eam1104I CTCTTC 2 cut(s) 395, 1922
EarI CTCTTC 2 cut(s) 395, 1922
Eco130I CCWWGG 3 cut(s) 1104, 1363, 2517
Eco31I GGTCTC 3 cut(s) 377, 467, 1997
Eco32I GATATC 1 cut(s) 1414
Eco47I GGWCC 3 cut(s) 1251, 1612, 1759
Eco57I CTGAAG 6 cut(s) 662, 1398, 1866, 2217, 2305, 2361
Eco91I GGTNACC 1 cut(s) 839
EcoNI CCTNNNNNAGG 1 cut(s) 2493
EcoO109I RGGNCCY 1 cut(s) 1612
EcoO65I GGTNACC 1 cut(s) 839
EcoRI GAATTC 1 cut(s) 980
EcoRII CCWGG 2 cut(s) 302, 2266
EcoRV GATATC 1 cut(s) 1414
EcoT14I CCWWGG 3 cut(s) 1104, 1363, 2517
EcoT22I ATGCAT 3 cut(s) 1697, 1813, 2068
ErhI CCWWGG 3 cut(s) 1104, 1363, 2517
FaeI CATG 9 cut(s) 1097, 1571, 1699, 1759, 1981, 2017, 2066, 2070, 2383
FatI CATG 9 cut(s) 1093, 1567, 1695, 1755, 1977, 2013, 2062, 2066, 2379
FauI CCCGC 1 cut(s) 202
Fnu4HI GCNGC 7 cut(s) 259, 887, 1098, 1401, 1526, 2362, 2408
FokI GGATG 9 cut(s) 29, 330, 635, 711, 950, 1087, 1454, 1547, 1945
Fsp4HI GCNGC 7 cut(s) 259, 887, 1098, 1401, 1526, 2362, 2408
FspBI CTAG 8 cut(s) 206, 227, 567, 1007, 1364, 1493, 1781, 2078
FspI TGCGCA 1 cut(s) 2360
GlaI GCGC 1 cut(s) 2360
GluI GCNGC 7 cut(s) 259, 887, 1098, 1401, 1526, 2362, 2408
GsaI CCCAGC 2 cut(s) 543, 2280
GsuI CTGGAG 4 cut(s) 164, 286, 1979, 2450
HaeIII GGCC 6 cut(s) 5, 69, 628, 2071, 2216, 2516
HapII CCGG 6 cut(s) 27, 194, 560, 693, 1194, 1617
HgaI GACGC 2 cut(s) 109, 1280
HhaI GCGC 1 cut(s) 2361
Hin1II CATG 9 cut(s) 1097, 1571, 1699, 1759, 1981, 2017, 2066, 2070, 2383
Hin6I GCGC 1 cut(s) 2359
HinP1I GCGC 1 cut(s) 2359
HindIII AAGCTT 3 cut(s) 576, 2031, 2467
HinfI GANTC 8 cut(s) 137, 959, 1239, 1267, 1282, 1389, 1424, 2143
HpaII CCGG 6 cut(s) 27, 194, 560, 693, 1194, 1617
HphI GGTGA 8 cut(s) 248, 409, 514, 875, 1471, 1559, 2158, 2363
Hpy166II GTNNAC 7 cut(s) 283, 1121, 1436, 1550, 1679, 1911, 2089
Hpy188I TCNGA 7 cut(s) 900, 958, 1024, 1032, 1304, 1797, 1885
Hpy8I GTNNAC 7 cut(s) 283, 1121, 1436, 1550, 1679, 1911, 2089
HpyAV CCTTC 8 cut(s) 373, 902, 1510, 1693, 1840, 1890, 2489, 2491
HpyCH4IV ACGT 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 6 cut(s) 584, 1573, 1582, 1978, 2123, 2407
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 9 cut(s) 1097, 1571, 1699, 1759, 1981, 2017, 2066, 2070, 2383
HspAI GCGC 1 cut(s) 2359
KroI GCCGGC 1 cut(s) 1193
KroNI GCCGGC 1 cut(s) 1195
Kzo9I GATC 8 cut(s) 181, 187, 953, 1019, 1381, 1476, 1519, 1570
LmnI GCTCC 6 cut(s) 76, 145, 463, 694, 2431, 2547
Lsp1109I GCAGC 6 cut(s) 873, 1109, 1387, 1512, 2373, 2394
LweI GCATC 6 cut(s) 339, 862, 1109, 1956, 2172, 2280
MaeI CTAG 8 cut(s) 206, 227, 567, 1007, 1364, 1493, 1781, 2078
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 7 cut(s) 778, 839, 863, 1009, 1507, 1558, 1858
MalI GATC 8 cut(s) 183, 189, 955, 1021, 1383, 1478, 1521, 1572
MbiI CCGCTC 1 cut(s) 689
MboI GATC 8 cut(s) 181, 187, 953, 1019, 1381, 1476, 1519, 1570
MfeI CAATTG 1 cut(s) 1982
MflI RGATCY 2 cut(s) 181, 1019
MhlI GDGCHC 2 cut(s) 60, 246
MlsI TGGCCA 4 cut(s) 5, 2071, 2216, 2516
MluNI TGGCCA 4 cut(s) 5, 2071, 2216, 2516
MlyI GAGTC 4 cut(s) 953, 1233, 1276, 1433
MmeI TCCRAC 3 cut(s) 324, 595, 626
Mox20I TGGCCA 4 cut(s) 5, 2071, 2216, 2516
Mph1103I ATGCAT 3 cut(s) 1697, 1813, 2068
MroNI GCCGGC 1 cut(s) 1193
MroXI GAANNNNTTC 1 cut(s) 653
MscI TGGCCA 4 cut(s) 5, 2071, 2216, 2516
MseI TTAA 8 cut(s) 174, 333, 858, 1839, 1889, 2328, 2366, 2376
MslI CAYNNNNRTG 3 cut(s) 880, 2065, 2510
Msp20I TGGCCA 4 cut(s) 5, 2071, 2216, 2516
MspA1I CMGCKG 1 cut(s) 1525
MspCI CTTAAG 1 cut(s) 2365
MspI CCGG 6 cut(s) 27, 194, 560, 693, 1194, 1617
MspR9I CCNGG 6 cut(s) 28, 194, 304, 693, 1617, 2268
MunI CAATTG 1 cut(s) 1982
MvaI CCWGG 2 cut(s) 304, 2268
MwoI GCNNNNNNNGC 6 cut(s) 584, 1573, 1582, 1978, 2123, 2407
NaeI GCCGGC 1 cut(s) 1195
NciI CCSGG 4 cut(s) 28, 194, 693, 1617
NdeII GATC 8 cut(s) 181, 187, 953, 1019, 1381, 1476, 1519, 1570
NgoMIV GCCGGC 1 cut(s) 1193
NlaIII CATG 9 cut(s) 1097, 1571, 1699, 1759, 1981, 2017, 2066, 2070, 2383
NlaIV GGNNCC 3 cut(s) 1614, 2282, 2543
NmeAIII GCCGAG 1 cut(s) 533
NmuCI GTSAC 5 cut(s) 778, 863, 1009, 1507, 1858
NsbI TGCGCA 1 cut(s) 2360
NsiI ATGCAT 3 cut(s) 1697, 1813, 2068
NspI RCATGY 1 cut(s) 2066
NspV TTCGAA 3 cut(s) 527, 984, 1899
OliI CACNNNNGTG 1 cut(s) 880
PdiI GCCGGC 1 cut(s) 1195
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 4 cut(s) 137, 1267, 1389, 2143
PflFI GACNNNGTC 1 cut(s) 1423
PflMI CCANNNNNTGG 2 cut(s) 1671, 1825
PfoI TCCNGGA 2 cut(s) 302, 691
PkrI GCNGC 7 cut(s) 260, 888, 1099, 1402, 1527, 2363, 2409
PleI GAGTC 4 cut(s) 953, 1233, 1276, 1432
PpsI GAGTC 4 cut(s) 953, 1233, 1276, 1432
PpuMI RGGWCCY 1 cut(s) 1612
PsiI TTATAA 1 cut(s) 1640
Psp5II RGGWCCY 1 cut(s) 1612
Psp6I CCWGG 2 cut(s) 302, 2266
PspEI GGTNACC 1 cut(s) 839
PspFI CCCAGC 2 cut(s) 539, 2276
PspGI CCWGG 2 cut(s) 302, 2266
PspN4I GGNNCC 3 cut(s) 1614, 2282, 2543
PspPI GGNCC 4 cut(s) 626, 1251, 1612, 1759
PspPPI RGGWCCY 1 cut(s) 1612
PsrI GAACNNNNNNTAC 4 cut(s) 83, 115, 1761, 1793
PstI CTGCAG 1 cut(s) 1530
PstNI CAGNNNCTG 2 cut(s) 593, 1772
PsuI RGATCY 2 cut(s) 181, 1019
PsyI GACNNNGTC 1 cut(s) 1423
PvuII CAGCTG 1 cut(s) 1525
RsaI GTAC 8 cut(s) 284, 293, 299, 591, 816, 1851, 1912, 2248
RsaNI GTAC 8 cut(s) 283, 292, 298, 590, 815, 1850, 1911, 2247
RseI CAYNNNNRTG 3 cut(s) 880, 2065, 2510
SaqAI TTAA 8 cut(s) 174, 333, 858, 1839, 1889, 2328, 2366, 2376
SatI GCNGC 7 cut(s) 259, 887, 1098, 1401, 1526, 2362, 2408
Sau3AI GATC 8 cut(s) 181, 187, 953, 1019, 1381, 1476, 1519, 1570
Sau96I GGNCC 4 cut(s) 626, 1251, 1612, 1759
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 4 cut(s) 953, 1233, 1276, 1433
ScrFI CCNGG 6 cut(s) 28, 194, 304, 693, 1617, 2268
SduI GDGCHC 2 cut(s) 60, 246
SfaNI GCATC 6 cut(s) 339, 862, 1109, 1956, 2172, 2280
SfcI CTRYAG 3 cut(s) 491, 1218, 1526
SfuI TTCGAA 3 cut(s) 527, 984, 1899
SinI GGWCC 3 cut(s) 1251, 1612, 1759
SmiMI CAYNNNNRTG 3 cut(s) 880, 2065, 2510
SmlI CTYRAG 5 cut(s) 71, 878, 2285, 2365, 2392
SmoI CTYRAG 5 cut(s) 71, 878, 2285, 2365, 2392
SsiI CCGC 4 cut(s) 209, 258, 687, 1209
SspI AATATT 1 cut(s) 769
SspMI CTAG 8 cut(s) 206, 227, 567, 1007, 1364, 1493, 1781, 2078
StyD4I CCNGG 6 cut(s) 26, 192, 302, 691, 1615, 2266
StyI CCWWGG 3 cut(s) 1104, 1363, 2517
TaiI ACGT 1 cut(s) 111
TaqI TCGA 8 cut(s) 135, 434, 527, 984, 1265, 1278, 1899, 2493
TatI WGTACW 6 cut(s) 282, 291, 297, 814, 1910, 2246
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 4 cut(s) 137, 1267, 1389, 2143
Tru1I TTAA 8 cut(s) 174, 333, 858, 1839, 1889, 2328, 2366, 2376
Tru9I TTAA 8 cut(s) 174, 333, 858, 1839, 1889, 2328, 2366, 2376
TscAI CASTG 5 cut(s) 18, 487, 787, 1443, 2140
TseFI GTSAC 5 cut(s) 778, 863, 1009, 1507, 1858
TseI GCWGC 6 cut(s) 886, 1097, 1400, 1525, 2361, 2407
Tsp45I GTSAC 5 cut(s) 778, 863, 1009, 1507, 1858
TspDTI ATGAA 8 cut(s) 662, 1079, 1094, 1359, 1458, 1712, 2002, 2135
TspRI CASTG 5 cut(s) 18, 487, 787, 1443, 2140
Tth111I GACNNNGTC 1 cut(s) 1423
Van91I CCANNNNNTGG 2 cut(s) 1671, 1825
Vha464I CTTAAG 1 cut(s) 2365
VpaK11BI GGWCC 3 cut(s) 1251, 1612, 1759
XagI CCTNNNNNAGG 1 cut(s) 2493
XapI RAATTY 8 cut(s) 755, 893, 980, 1025, 1789, 1894, 1921, 2549
XceI RCATGY 1 cut(s) 2066
XmaJI CCTAGG 1 cut(s) 1363
XmnI GAANNNNTTC 1 cut(s) 653
XspI CTAG 8 cut(s) 206, 227, 567, 1007, 1364, 1493, 1781, 2078
ZrmI AGTACT 1 cut(s) 299
Zsp2I ATGCAT 3 cut(s) 1697, 1813, 2068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.