Rw2G013380

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000039
Physical Location & Seq
Forward (+)
14249063 .. 14252364
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013380.1

Sequence Viewer

Length: 2442 bp
ATGGAAGTGGTTATTACTGCAGTTACCACAATTGTAGGGGCTGCTCTAGGAGCAGCGTTCCAGCAGCTCTTTGATGGTGTTATAAAGGCAAACAGAAAAGCTACAAAGTTTAATTCCGTCTTCGGGGATCTCAATCTCACGCTCCAGTCTTATAAAGAATTGGTTAAAGATATAGAACAAGTTGAAAATTTTCAACCATTGCAGGGACTAGATGGTTTCAAAACGAAGATGGAGGAGGGCATACAGCTTGTTGACAAGTGCTCCAATATTCATCCCTTGCAGTTGAAGATCAATTTCTTCAAAAAGAAGACATATGTTGGAAAACTTCGTGCATTGGATGGATCTCTTAAACAACTCTTCCTCATATTGAAATGGCAAGTAGACAACAATCTGAGGAACAGGGTAAGCGATTTGCAGAGGTCGGTGGACCGAATTGTTAGGAACGTGGTGGCGCAAAACCGGACTGAAAATCAAATTAGAGGTTGGTGCGTGGTACCTAATCCTCCGTCATTTACTGTTGGATTGGATGAGCCTTTGAAGGATTTGAAGATGACGTTTCTAAATGATGATCAAGTGTCAATGCTTGTGCTCACTGCTCCTGGAGGATGTGGGAAAACCACTTTGGCACAGTTGTTCTGTCGAGATGAGGAAGTCAAAGAAAAATTCAAGAAGAATATTTTCTTTGTCACTGTTTCGGAAAAGCCCAACTTGGACCGTATTGTAGCAGAACTGTACCAGAGCACTGGATCCCAAGTACCTGCGTTCCAGAATGAACCAAATGCACTCTGCTGGCTGCAAGAATTTTTGATAGAAACAGGACAAAATCCTCTACTTTTGGTCTTGGATGATGTTTGGGATGGCTCTTCAGAATCCCTGCTGCTTGATAAGTGTCATGAATTCAAAAATCCAAATTACAAGATTTTGGTGACTTCCAGATTTGATTTTCAAAGATTTCGACCTTCATATAAATTACGTCCACTAAATGATAAAGATGCATTGTCCCTTTTTCATGATACAACATCATTGGAAGATAGCGAGTTTGTTATACCTACAGTTCTGGTGACAAAGACTGTAAAGCTCTGTCAAGGATTTCCACTAGCCATTTCAGTGATCGGAAAAGACCTTTGCAACCAACCTGCCGAGATCTGGGAAAGAAGAGTGATAGAATTGTCTAAAGGTTCTTCCATTCTTGATTCTGAGAAATTGTTGCTTAATACACTACAGAGCAGCCTAGATGCCTTGGGTAAAGGACTGGCTCTAGTCAAGGAATGTTTCATAGACCTTGGTTCATTTCCTGAAGACCGAAGAATCCCAGCTGCTACCCTCATTGATATGTGGTCAGAGTTGTATGGCCTAGATTTGGATTACTTGTCCATTGCTTTCCTGCACGATCTCAGCAGCCGCAGTCTAGCCAATCTCATAGTCATAAGGAATGCAAAGGAGGATGCGAATGGCTACTATAATGAACACTTTGTTACCCAGCATGACATACTTAGGAGCCTGGCTATCCATCAGACTGGTCATGACCCAACAGGACATAGCAAAAGGCTGAATATAGACATACGCAAAGATGATATTCCTAATTGGTGGTCAGAACATAAGCAGAAACCCAAGAAGACTCGCTTATTATCCATCTCAACCGCTGAGGTTCTGGTTTTGAATTTTCAGACAAAGAACTATGCCTTTCCCAAATTCAGGAAGATGTCGAAGTCGTTGAAGGTTCTAATAGTCACAAATTATGGTGTCATACCAGCTGAAGTGAGTAACTTTACATCATTGGGTTCTTTGTCTGAGCTGAAGAGGATAAGATTAGAGCGCATTTCAGTTCCTTCCATTACCAAGAACTCCATACAGTTGAATAGTCTACAAAAGATATCTTTATTCATGTGTAACATCAGGCGAGCTTTTAGCAACAGTTCCTTCAAATTTTTTAAGGCATTCCCGAGCCTTAAAGAAATCAACATTGACTATTGCAGTGATATGATGGAATTACCTGCTGACATCCGTCTTCTAATCCATCTAAAGAAGCTCAGTATCACCAACTGTCATAAGCTATCTGCCTTGCCTGAAATGATTGGAGAGCTAGTCAATTTAGAAGTTTTGAGGTTAAGGTCCTGCACAGACTTGTCAGAGTTGCCAAGTTCTGTTAGGAAACTTGAAAAACTAAAGGTTCTTGACATATCTAATTGCTACAGCATTAAGGAGTTGCCTGAACACATTGGTGAAATGTGCTGCTTAGAAAAGCTCAACATGAGGCAGTGCTCGAGATTGCAAGAGCTGCCTGAATCAATTTTGGATCTTGAAACGTTAACTGATGTGATATGTGATGAGGAGACAAAAGGGTTATGGGAACCTTACTTGCCCCTTCTCAGCAACCACATACAGATAAGGTTGGTCAAAGAGGAAATCAACCTAGATTGGCTTCAAATGCTTCACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

813

Amino Acids

92.64

Weight (kDa)

7.19

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 11 - 128 9.6e-19 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 180 - 313 1.2e-11 NB-ARC domain
LRR_14 PF23598 643 - 730 5.2e-11 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 83, 153
Acc36I ACCTGC 3 cut(s) 766, 1144, 2002
Acc65I GGTACC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 493
AccI GTMKAC 2 cut(s) 381, 1864
AciI CCGC 2 cut(s) 1402, 1641
AclI AACGTT 1 cut(s) 2306
AclWI GGATC 5 cut(s) 135, 349, 741, 754, 2304
AcsI RAATTY 7 cut(s) 187, 662, 800, 896, 1660, 1691, 1925
AcuI CTGAAG 4 cut(s) 849, 1317, 1776, 1817
AfaI GTAC 3 cut(s) 495, 734, 756
AfiI CCNNNNNNNGG 5 cut(s) 123, 203, 1146, 1360, 1695
AjnI CCWGG 2 cut(s) 598, 1500
AjuI GAANNNNNNNTTGG 2 cut(s) 605, 637
AleI CACNNNNGTG 1 cut(s) 2220
Alw21I GWGCWC 4 cut(s) 263, 591, 743, 2264
Alw26I GTCTC 1 cut(s) 2327
AlwI GGATC 5 cut(s) 135, 349, 741, 754, 2304
Ama87I CYCGRG 2 cut(s) 1942, 2263
AoxI GGCC 1 cut(s) 1351
ApoI RAATTY 7 cut(s) 187, 662, 800, 896, 1660, 1691, 1925
Asp700I GAANNNNTTC 2 cut(s) 189, 677
Asp718I GGTACC 1 cut(s) 493
AspLEI GCGC 2 cut(s) 454, 1818
AspS9I GGNCC 3 cut(s) 427, 712, 2112
AsuHPI GGTGA 4 cut(s) 937, 1072, 2029, 2234
AvaI CYCGRG 2 cut(s) 1942, 2263
AvaII GGWCC 3 cut(s) 427, 712, 2112
BamHI GGATCC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 493
BbsI GAAGAC 5 cut(s) 112, 314, 1305, 1622, 2000
Bbv12I GWGCWC 4 cut(s) 263, 591, 743, 2264
BbvCI CCTCAGC 1 cut(s) 1644
BccI CCATC 9 cut(s) 68, 206, 223, 332, 851, 1518, 1640, 1978, 2025
BciT130I CCWGG 2 cut(s) 600, 1502
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 2327
BfaI CTAG 9 cut(s) 47, 209, 1097, 1232, 1259, 1355, 1409, 2084, 2414
BfmI CTRYAG 4 cut(s) 18, 1050, 1220, 2191
BfuAI ACCTGC 3 cut(s) 766, 1144, 2002
BglII AGATCT 1 cut(s) 1143
Bme1390I CCNGG 2 cut(s) 600, 1502
Bme18I GGWCC 3 cut(s) 427, 712, 2112
BmeT110I CYCGRG 2 cut(s) 1942, 2263
BmgT120I GGNCC 3 cut(s) 427, 712, 2112
BmiI GGNNCC 4 cut(s) 495, 748, 1499, 2352
BmrFI CCNGG 2 cut(s) 600, 1502
BmsI GCATC 3 cut(s) 982, 1225, 1435
BoxI GACNNNNGTC 1 cut(s) 2004
BpiI GAAGAC 5 cut(s) 112, 314, 1305, 1622, 2000
BpmI CTGGAG 2 cut(s) 128, 621
Bpu10I CCTNAGC 1 cut(s) 1644
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 1239, 1282
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 2070, 2100
Bsc4I CCNNNNNNNGG 5 cut(s) 123, 203, 1146, 1360, 1695
Bse1I ACTGG 4 cut(s) 145, 748, 1257, 1522
Bse3DI GCAATG 2 cut(s) 197, 1374
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 2 cut(s) 600, 1502
BseDI CCNNGG 2 cut(s) 1239, 1282
BseGI GGATG 8 cut(s) 271, 343, 532, 611, 850, 862, 1450, 2001
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 5 cut(s) 123, 203, 1146, 1360, 1695
BseMI GCAATG 2 cut(s) 197, 1374
BseMII CTCAG 7 cut(s) 383, 1188, 1408, 1635, 1782, 2044, 2383
BseNI ACTGG 4 cut(s) 145, 748, 1257, 1522
BseRI GAGGAG 2 cut(s) 248, 2345
BseYI CCCAGC 2 cut(s) 1312, 1479
BsgI GTGCAG 2 cut(s) 1370, 2101
BshFI GGCC 1 cut(s) 1353
BshNI GGYRCC 1 cut(s) 493
BsiHKAI GWGCWC 4 cut(s) 263, 591, 743, 2264
BsiHKCI CYCGRG 2 cut(s) 1942, 2263
BsiSI CCGG 1 cut(s) 460
BslFI GGGAC 2 cut(s) 219, 985
BslI CCNNNNNNNGG 5 cut(s) 123, 203, 1146, 1360, 1695
BsmAI GTCTC 1 cut(s) 2327
BsmFI GGGAC 2 cut(s) 219, 985
BsmI GAATGC 2 cut(s) 1438, 1937
BsnI GGCC 1 cut(s) 1353
BsoBI CYCGRG 2 cut(s) 1942, 2263
Bsp1286I GDGCHC 4 cut(s) 263, 591, 743, 2264
Bsp143I GATC 9 cut(s) 127, 288, 341, 568, 746, 1110, 1143, 1390, 2296
BspACI CCGC 2 cut(s) 1402, 1641
BspANI GGCC 1 cut(s) 1353
BspCNI CTCAG 7 cut(s) 384, 1189, 1407, 1636, 1783, 2043, 2382
BspHI TCATGA 3 cut(s) 892, 1009, 1522
BspLI GGNNCC 4 cut(s) 495, 748, 1499, 2352
BspMAI CTGCAG 1 cut(s) 22
BspMI ACCTGC 3 cut(s) 766, 1144, 2002
BspPI GGATC 5 cut(s) 135, 349, 741, 754, 2304
BspQI GCTCTTC 1 cut(s) 868
BspT107I GGYRCC 1 cut(s) 493
BsrDI GCAATG 2 cut(s) 197, 1374
BsrI ACTGG 4 cut(s) 145, 748, 1257, 1522
BssECI CCNNGG 2 cut(s) 1239, 1282
BssMI GATC 9 cut(s) 127, 288, 341, 568, 746, 1110, 1143, 1390, 2296
BssT1I CCWWGG 2 cut(s) 1239, 1282
Bst2UI CCWGG 2 cut(s) 600, 1502
Bst6I CTCTTC 4 cut(s) 362, 868, 1150, 1793
BstAPI GCANNNNNTGC 1 cut(s) 2278
BstC8I GCNNGC 2 cut(s) 791, 1902
BstDEI CTNAG 9 cut(s) 392, 1197, 1394, 1493, 1644, 1791, 2030, 2236, 2369
BstF5I GGATG 8 cut(s) 271, 343, 532, 611, 850, 862, 1450, 2001
BstHHI GCGC 2 cut(s) 454, 1818
BstKTI GATC 9 cut(s) 130, 291, 344, 571, 749, 1113, 1146, 1393, 2299
BstMAI GTCTC 1 cut(s) 2327
BstMBI GATC 9 cut(s) 127, 288, 341, 568, 746, 1110, 1143, 1390, 2296
BstMWI GCNNNNNNNGC 3 cut(s) 50, 2278, 2428
BstNI CCWGG 2 cut(s) 600, 1502
BstPAI GACNNNNGTC 1 cut(s) 2004
BstSCI CCNGG 2 cut(s) 598, 1500
BstSFI CTRYAG 4 cut(s) 18, 1050, 1220, 2191
BstV2I GAAGAC 5 cut(s) 112, 314, 1305, 1622, 2000
BstX2I RGATCY 5 cut(s) 127, 341, 746, 1143, 2296
BstXI CCANNNNNNTGG 2 cut(s) 743, 1517
BstYI RGATCY 5 cut(s) 127, 341, 746, 1143, 2296
BsuRI GGCC 1 cut(s) 1353
BtsCI GGATG 8 cut(s) 271, 343, 532, 611, 850, 862, 1450, 2001
BtsI GCAGTG 3 cut(s) 591, 1981, 2264
BtsIMutI CAGTG 6 cut(s) 591, 687, 741, 1113, 1981, 2264
BveI ACCTGC 3 cut(s) 766, 1144, 2002
Cac8I GCNNGC 2 cut(s) 791, 1902
CciI TCATGA 3 cut(s) 892, 1009, 1522
CfoI GCGC 2 cut(s) 454, 1818
Cfr13I GGNCC 3 cut(s) 427, 712, 2112
Csp6I GTAC 3 cut(s) 494, 733, 755
CviAII CATG 6 cut(s) 893, 1010, 1484, 1523, 1885, 2251
CviQI GTAC 3 cut(s) 494, 733, 755
DdeI CTNAG 9 cut(s) 392, 1197, 1394, 1493, 1644, 1791, 2030, 2236, 2369
DpnI GATC 9 cut(s) 129, 290, 343, 570, 748, 1112, 1145, 1392, 2298
DpnII GATC 9 cut(s) 127, 288, 341, 568, 746, 1110, 1143, 1390, 2296
Eam1104I CTCTTC 4 cut(s) 362, 868, 1150, 1793
EarI CTCTTC 4 cut(s) 362, 868, 1150, 1793
Eco130I CCWWGG 2 cut(s) 1239, 1282
Eco32I GATATC 1 cut(s) 1875
Eco47I GGWCC 3 cut(s) 427, 712, 2112
Eco57I CTGAAG 4 cut(s) 849, 1317, 1776, 1817
Eco88I CYCGRG 2 cut(s) 1942, 2263
EcoO109I RGGNCCY 1 cut(s) 2112
EcoRI GAATTC 1 cut(s) 896
EcoRII CCWGG 2 cut(s) 598, 1500
EcoRV GATATC 1 cut(s) 1875
EcoT14I CCWWGG 2 cut(s) 1239, 1282
EcoT22I ATGCAT 1 cut(s) 997
ErhI CCWWGG 2 cut(s) 1239, 1282
FaeI CATG 6 cut(s) 896, 1013, 1487, 1526, 1888, 2254
FalI AAGNNNNNCTT 4 cut(s) 692, 724, 1607, 1639
FaqI GGGAC 2 cut(s) 219, 985
FatI CATG 6 cut(s) 892, 1009, 1483, 1522, 1884, 2250
FauNDI CATATG 1 cut(s) 313
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 2 cut(s) 381, 1864
FokI GGATG 8 cut(s) 258, 350, 539, 618, 857, 869, 1457, 1988
FspBI CTAG 9 cut(s) 47, 209, 1097, 1232, 1259, 1355, 1409, 2084, 2414
GlaI GCGC 2 cut(s) 453, 1817
GsaI CCCAGC 2 cut(s) 1316, 1483
GsuI CTGGAG 2 cut(s) 128, 621
HaeIII GGCC 1 cut(s) 1353
HapII CCGG 1 cut(s) 460
HhaI GCGC 2 cut(s) 454, 1818
Hin1II CATG 6 cut(s) 896, 1013, 1487, 1526, 1888, 2254
Hin6I GCGC 2 cut(s) 452, 1816
HinP1I GCGC 2 cut(s) 452, 1816
HincII GTYRAC 2 cut(s) 253, 2310
HindII GTYRAC 2 cut(s) 253, 2310
HinfI GANTC 5 cut(s) 869, 1193, 1308, 1618, 2285
HpaI GTTAAC 1 cut(s) 2310
HpaII CCGG 1 cut(s) 460
HphI GGTGA 4 cut(s) 937, 1072, 2029, 2234
Hpy166II GTNNAC 6 cut(s) 253, 382, 427, 977, 1865, 2310
Hpy8I GTNNAC 6 cut(s) 253, 382, 427, 977, 1865, 2310
HpyAV CCTTC 6 cut(s) 532, 969, 1711, 1839, 1930, 2375
HpyCH4IV ACGT 4 cut(s) 444, 554, 973, 2306
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 2278, 2428
HpyF3I CTNAG 9 cut(s) 392, 1197, 1394, 1493, 1644, 1791, 2030, 2236, 2369
HpySE526I ACGT 4 cut(s) 444, 554, 973, 2306
Hsp92II CATG 6 cut(s) 896, 1013, 1487, 1526, 1888, 2254
HspAI GCGC 2 cut(s) 452, 1816
KpnI GGTACC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 568
KspAI GTTAAC 1 cut(s) 2310
Kzo9I GATC 9 cut(s) 127, 288, 341, 568, 746, 1110, 1143, 1390, 2296
LguI GCTCTTC 1 cut(s) 868
LmnI GCTCC 5 cut(s) 50, 147, 266, 601, 1497
LweI GCATC 3 cut(s) 982, 1225, 1435
MaeI CTAG 9 cut(s) 47, 209, 1097, 1232, 1259, 1355, 1409, 2084, 2414
MaeII ACGT 4 cut(s) 444, 554, 973, 2306
MaeIII GTNAC 8 cut(s) 22, 685, 925, 1060, 1474, 1729, 1763, 1889
MalI GATC 9 cut(s) 129, 290, 343, 570, 748, 1112, 1145, 1392, 2298
MboI GATC 9 cut(s) 127, 288, 341, 568, 746, 1110, 1143, 1390, 2296
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 5 cut(s) 127, 341, 746, 1143, 2296
MhlI GDGCHC 4 cut(s) 263, 591, 743, 2264
MlyI GAGTC 1 cut(s) 1612
MmeI TCCRAC 2 cut(s) 298, 499
Mph1103I ATGCAT 1 cut(s) 997
MroXI GAANNNNTTC 2 cut(s) 189, 677
MseI TTAA 9 cut(s) 111, 165, 348, 1212, 1932, 1950, 2108, 2199, 2309
MslI CAYNNNNRTG 3 cut(s) 1106, 1331, 2220
MspA1I CMGCKG 3 cut(s) 1316, 1643, 1754
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 2 cut(s) 600, 1502
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 2 cut(s) 1438, 1937
MvaI CCWGG 2 cut(s) 600, 1502
MwoI GCNNNNNNNGC 3 cut(s) 50, 2278, 2428
NdeI CATATG 1 cut(s) 313
NdeII GATC 9 cut(s) 127, 288, 341, 568, 746, 1110, 1143, 1390, 2296
NlaIII CATG 6 cut(s) 896, 1013, 1487, 1526, 1888, 2254
NlaIV GGNNCC 4 cut(s) 495, 748, 1499, 2352
NmeAIII GCCGAG 1 cut(s) 1165
NmuCI GTSAC 4 cut(s) 685, 925, 1060, 1729
NsiI ATGCAT 1 cut(s) 997
OliI CACNNNNGTG 1 cut(s) 2220
PaeR7I CTCGAG 1 cut(s) 2263
PagI TCATGA 3 cut(s) 892, 1009, 1522
PciSI GCTCTTC 1 cut(s) 868
PctI GAATGC 2 cut(s) 1438, 1937
PdmI GAANNNNTTC 2 cut(s) 189, 677
PfeI GAWTC 4 cut(s) 869, 1193, 1308, 2285
PfoI TCCNGGA 1 cut(s) 598
PleI GAGTC 1 cut(s) 1612
PpsI GAGTC 1 cut(s) 1612
PpuMI RGGWCCY 1 cut(s) 2112
PshAI GACNNNNGTC 1 cut(s) 2004
PsiI TTATAA 2 cut(s) 83, 153
Psp1406I AACGTT 1 cut(s) 2306
Psp5II RGGWCCY 1 cut(s) 2112
Psp6I CCWGG 2 cut(s) 598, 1500
PspFI CCCAGC 2 cut(s) 1312, 1479
PspGI CCWGG 2 cut(s) 598, 1500
PspN4I GGNNCC 4 cut(s) 495, 748, 1499, 2352
PspPI GGNCC 3 cut(s) 427, 712, 2112
PspPPI RGGWCCY 1 cut(s) 2112
PstI CTGCAG 1 cut(s) 22
PsuI RGATCY 5 cut(s) 127, 341, 746, 1143, 2296
PvuII CAGCTG 2 cut(s) 1316, 1754
RsaI GTAC 3 cut(s) 495, 734, 756
RsaNI GTAC 3 cut(s) 494, 733, 755
RseI CAYNNNNRTG 3 cut(s) 1106, 1331, 2220
SapI GCTCTTC 1 cut(s) 868
SaqAI TTAA 9 cut(s) 111, 165, 348, 1212, 1932, 1950, 2108, 2199, 2309
Sau3AI GATC 9 cut(s) 127, 288, 341, 568, 746, 1110, 1143, 1390, 2296
Sau96I GGNCC 3 cut(s) 427, 712, 2112
SchI GAGTC 1 cut(s) 1612
ScrFI CCNGG 2 cut(s) 600, 1502
SduI GDGCHC 4 cut(s) 263, 591, 743, 2264
SfaNI GCATC 3 cut(s) 982, 1225, 1435
SfcI CTRYAG 4 cut(s) 18, 1050, 1220, 2191
Sfr274I CTCGAG 1 cut(s) 2263
SinI GGWCC 3 cut(s) 427, 712, 2112
SlaI CTCGAG 1 cut(s) 2263
SmiMI CAYNNNNRTG 3 cut(s) 1106, 1331, 2220
SmlI CTYRAG 1 cut(s) 2263
SmoI CTYRAG 1 cut(s) 2263
SsiI CCGC 2 cut(s) 1402, 1641
SspI AATATT 2 cut(s) 268, 676
SspMI CTAG 9 cut(s) 47, 209, 1097, 1232, 1259, 1355, 1409, 2084, 2414
StyD4I CCNGG 2 cut(s) 598, 1500
StyI CCWWGG 2 cut(s) 1239, 1282
TaiI ACGT 4 cut(s) 447, 557, 976, 2309
TaqI TCGA 4 cut(s) 640, 955, 1706, 2264
TaqII GACCGA 2 cut(s) 444, 1317
TauI GCSGC 1 cut(s) 1404
TfiI GAWTC 4 cut(s) 869, 1193, 1308, 2285
Tru1I TTAA 9 cut(s) 111, 165, 348, 1212, 1932, 1950, 2108, 2199, 2309
Tru9I TTAA 9 cut(s) 111, 165, 348, 1212, 1932, 1950, 2108, 2199, 2309
TscAI CASTG 6 cut(s) 598, 694, 748, 1113, 1981, 2264
TseFI GTSAC 4 cut(s) 685, 925, 1060, 1729
Tsp45I GTSAC 4 cut(s) 685, 925, 1060, 1729
TspDTI ATGAA 9 cut(s) 260, 786, 909, 951, 998, 1264, 1278, 1479, 1873
TspGWI ACGGA 3 cut(s) 106, 495, 1994
TspRI CASTG 6 cut(s) 598, 694, 748, 1113, 1981, 2264
VpaK11BI GGWCC 3 cut(s) 427, 712, 2112
XapI RAATTY 7 cut(s) 187, 662, 800, 896, 1660, 1691, 1925
XhoI CTCGAG 1 cut(s) 2263
XmiI GTMKAC 2 cut(s) 381, 1864
XmnI GAANNNNTTC 2 cut(s) 189, 677
XspI CTAG 9 cut(s) 47, 209, 1097, 1232, 1259, 1355, 1409, 2084, 2414
Zsp2I ATGCAT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.