Rorug02G0120200

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000039
Physical Location & Seq
Forward (+)
10263725 .. 10265849
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0120200.1

Sequence Viewer

Length: 1476 bp
ATGCACGCCCAATTGATCACTTGGGGTCTTTTCGATTCGTTCTGGGCAAGAAAGCTACTCAAGAGCTATTGGGATTATGGCGATATAAATTATACGATTCTGACCTTCAGGTACATTGAAAAGCCTGGTGCTTTCTGCCTCAACACGGTGATTAAGGCTCATTCGGATACCTCAGAGCCGGGTCGGGCTTTGGTGGTCTATTTCGAATGGCTGAGAAGAGGGTTTTCTCCCACCAGCTATAGTTTCGTGCCGCTTTTCGGGGCTTGTAGTCAGTTGGGTGATGTTGAGTGTGGGAGGAAATGCCATGGGCAGGTTTTGAAGCATGGGGTTCAGTCTGTGCTGCCTGTGGGCAACTCTTTGATTCATATGTATTGTTGTTGTGGGAGAGTTGAGCTTGCTAGGAAGGTGTTTGATGAAATGCCTAAGAGAGACGTGGTGTCGTGGAATGCGATTGTGGATGGGTATGCTAGGTTTGGGGATTTGAATGTGGCTCATATGCTGTTTGATGCAATGCCTGAGAGAAATGTGGTTGCTTGGAATGCGTTGCTTGGTGGGTATTGGAAGGGAGGGAAGCCCGGGTGTGCGTTGAAGTTGTTTAGGGATATGGTGGGCATGGGAATGAAGGCTGATAGTACTGCAATGGTGAATATGCTCGCGGCTTGTGGTCGGTCAGCTAGACTGAAAGAAGGAAGATCAGTTCATGGATATCTAATTAGGGCATTCACAGAGTTGAACGTAGTTGTTGAAACGGCTTTGATCGATATGTATTGTAAATGCAAAAGGGTGGAAGTGGCGCGTGTAGTCTTTGGGAGCATGGCATACAGGAACTTCGTTTGCTGGAATGCTATGATTTTGGGGCATTGTTTTGAGGGAAACCCTGAAGATGGACTTAGCCTGTTTAGTGAAATGTTAGGTAGAACAGAGTCAAACGATGGGGAAACCATCCCTGAGAACAGGTTGTCGAGGCCAACCGAAGGCAGAGGGGGAATTCTTCCGGATGAAACTACTTTCATAGGTGTTCTTTGTGCCTGTGCGCGTGCTGGATTGTTAAGAGAAGCCAGAGATTACTTCAGGCAAATGATTAATGTTTTCCATTTAAAGCCCCGGTTTGCACATTATTGGTGCATGGCTAATGTTTATGTTGGTGTGGGGCTAATACAAGAGGCAGAGGAAATGATCAGGAAAATGCCAGAGGTTGCTGAAGATTTGACAAAAGAATCCTTGGCATGGGCTAATGTGCTTGGTTCATGTCGTTTCCAAAAAGATGTTACTGTGGGAGAACAAATTGCAATATCTCTGATTGACATGGAACCTCAAAACATTGCATACTACAGATTGTTGCTGAATGTCTATGCTGCAGCGGGCCGATGGGAGGATGTTGCTTGGGTGAAAGAAATGATGAAAGAAAACAAGCTCAGAAGGCTACCCGGCTGCAATCTTGTAGACCTGAACGAAATAGTTCATAAGAGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

491

Amino Acids

55.53

Weight (kDa)

8.03

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 118 - 144 3.8e-06 PPR repeat
PPR_1 PF12854 118 - 140 2.3e-06 PPR repeat
PPR_2 PF13041 143 - 176 3.3e-06 PPR repeat family
PPR_2 PF13041 174 - 221 3.2e-07 PPR repeat family
PPR PF01535 278 - 305 5.3e-06 PPR repeat
E_motif PF20431 422 - 481 2.1e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 1443
AccII CGCG 3 cut(s) 656, 796, 1036
AccIII TCCGGA 1 cut(s) 994
AciI CCGC 3 cut(s) 251, 656, 1361
AcsI RAATTY 1 cut(s) 987
AcuI CTGAAG 4 cut(s) 91, 900, 1054, 1221
AfaI GTAC 2 cut(s) 113, 634
AfiI CCNNNNNNNGG 7 cut(s) 145, 257, 310, 884, 974, 1227, 1372
AgsI TTSAA 6 cut(s) 119, 319, 484, 589, 733, 746
AhdI GACNNNNNGTC 1 cut(s) 436
AjiI CACGTC 1 cut(s) 433
AjnI CCWGG 1 cut(s) 124
AloI GAACNNNNNNTCC 2 cut(s) 681, 713
AluBI AGCT 6 cut(s) 55, 66, 237, 394, 674, 1414
AluI AGCT 6 cut(s) 55, 66, 237, 394, 674, 1414
Alw26I GTCTC 1 cut(s) 423
Ama87I CYCGRG 1 cut(s) 575
Aor13HI TCCGGA 1 cut(s) 994
AoxI GGCC 2 cut(s) 965, 1363
ApeKI GCWGC 4 cut(s) 340, 1355, 1358, 1431
ApoI RAATTY 1 cut(s) 987
AseI ATTAAT 1 cut(s) 1083
Asp700I GAANNNNTTC 1 cut(s) 1458
AspLEI GCGC 2 cut(s) 796, 1036
AspS9I GGNCC 1 cut(s) 1363
AsuC2I CCSGG 5 cut(s) 180, 576, 577, 1105, 1428
AsuHPI GGTGA 4 cut(s) 160, 290, 655, 1399
AsuII TTCGAA 1 cut(s) 204
AvaI CYCGRG 1 cut(s) 575
BbvI GCAGC 4 cut(s) 327, 1342, 1370, 1418
BccI CCATC 5 cut(s) 452, 878, 926, 950, 1362
BceAI ACGGC 1 cut(s) 765
BciT130I CCWGG 1 cut(s) 126
BciVI GTATCC 1 cut(s) 160
BclI TGATCA 2 cut(s) 15, 1176
BcnI CCSGG 5 cut(s) 180, 576, 577, 1105, 1428
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 3 cut(s) 399, 468, 675
BfmI CTRYAG 3 cut(s) 238, 1330, 1356
BfuAI ACCTGC 1 cut(s) 301
BfuI GTATCC 1 cut(s) 160
BisI GCNGC 6 cut(s) 251, 341, 657, 1356, 1359, 1432
BlsI GCNGC 6 cut(s) 252, 342, 658, 1357, 1360, 1433
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 6 cut(s) 126, 180, 576, 577, 1105, 1428
BmeRI GACNNNNNGTC 1 cut(s) 436
BmeT110I CYCGRG 1 cut(s) 575
BmgBI CACGTC 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 1363
BmiI GGNNCC 1 cut(s) 1311
BmrFI CCNGG 6 cut(s) 126, 180, 576, 577, 1105, 1428
BmsI GCATC 1 cut(s) 496
Bpu14I TTCGAA 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 5 cut(s) 180, 576, 577, 1105, 1428
Bsa29I ATCGAT 1 cut(s) 759
BsaJI CCNNGG 4 cut(s) 304, 575, 1103, 1221
BsaWI WCCGGW 1 cut(s) 994
Bsc4I CCNNNNNNNGG 7 cut(s) 145, 257, 310, 884, 974, 1227, 1372
Bse3DI GCAATG 3 cut(s) 516, 645, 1320
BseAI TCCGGA 1 cut(s) 994
BseBI CCWGG 1 cut(s) 126
BseCI ATCGAT 1 cut(s) 759
BseDI CCNNGG 4 cut(s) 304, 575, 1103, 1221
BseGI GGATG 4 cut(s) 463, 942, 1003, 1381
BseLI CCNNNNNNNGG 7 cut(s) 145, 257, 310, 884, 974, 1227, 1372
BseMI GCAATG 3 cut(s) 516, 645, 1320
BseMII CTCAG 5 cut(s) 186, 203, 507, 939, 1429
BseXI GCAGC 4 cut(s) 327, 1342, 1370, 1418
Bsh1236I CGCG 3 cut(s) 656, 796, 1036
BshFI GGCC 2 cut(s) 967, 1365
BshVI ATCGAT 1 cut(s) 759
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 5 cut(s) 179, 576, 995, 1105, 1428
BslI CCNNNNNNNGG 7 cut(s) 145, 257, 310, 884, 974, 1227, 1372
BsmAI GTCTC 1 cut(s) 423
BsmBI CGTCTC 1 cut(s) 423
BsmI GAATGC 4 cut(s) 451, 544, 719, 847
BsnI GGCC 2 cut(s) 967, 1365
BsoBI CYCGRG 1 cut(s) 575
Bsp119I TTCGAA 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 994
Bsp143I GATC 4 cut(s) 15, 692, 756, 1176
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 3 cut(s) 251, 656, 1361
BspANI GGCC 2 cut(s) 967, 1365
BspCNI CTCAG 5 cut(s) 185, 204, 508, 940, 1428
BspDI ATCGAT 1 cut(s) 759
BspEI TCCGGA 1 cut(s) 994
BspFNI CGCG 3 cut(s) 656, 796, 1036
BspLI GGNNCC 1 cut(s) 1311
BspMAI CTGCAG 1 cut(s) 1360
BspMI ACCTGC 1 cut(s) 301
BspT104I TTCGAA 1 cut(s) 204
BsrDI GCAATG 3 cut(s) 516, 645, 1320
BssECI CCNNGG 4 cut(s) 304, 575, 1103, 1221
BssMI GATC 4 cut(s) 15, 692, 756, 1176
BssT1I CCWWGG 2 cut(s) 304, 1221
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 148, 1273
Bst6I CTCTTC 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 204
BstC8I GCNNGC 5 cut(s) 6, 396, 654, 1038, 1363
BstDEI CTNAG 7 cut(s) 172, 212, 423, 516, 890, 948, 1415
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 4 cut(s) 463, 942, 1003, 1381
BstFNI CGCG 3 cut(s) 656, 796, 1036
BstHHI GCGC 2 cut(s) 796, 1036
BstKTI GATC 4 cut(s) 18, 695, 759, 1179
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 4 cut(s) 15, 692, 756, 1176
BstMWI GCNNNNNNNGC 2 cut(s) 539, 1420
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 6 cut(s) 124, 178, 574, 575, 1103, 1426
BstSFI CTRYAG 3 cut(s) 238, 1330, 1356
BstUI CGCG 3 cut(s) 656, 796, 1036
BstV1I GCAGC 4 cut(s) 327, 1342, 1370, 1418
Bsu15I ATCGAT 1 cut(s) 759
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 2 cut(s) 967, 1365
BsuTUI ATCGAT 1 cut(s) 759
BtgI CCRYGG 1 cut(s) 304
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 4 cut(s) 463, 942, 1003, 1381
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 5 cut(s) 6, 396, 654, 1038, 1363
CfoI GCGC 2 cut(s) 796, 1036
Cfr13I GGNCC 1 cut(s) 1363
Cfr9I CCCGGG 1 cut(s) 575
ClaI ATCGAT 1 cut(s) 759
Csp6I GTAC 2 cut(s) 112, 633
CviAII CATG 9 cut(s) 305, 323, 613, 701, 814, 1126, 1227, 1248, 1306
CviQI GTAC 2 cut(s) 112, 633
DdeI CTNAG 7 cut(s) 172, 212, 423, 516, 890, 948, 1415
DpnI GATC 4 cut(s) 17, 694, 758, 1178
DpnII GATC 4 cut(s) 15, 692, 756, 1176
DraI TTTAAA 1 cut(s) 1098
DriI GACNNNNNGTC 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 211
Eam1105I GACNNNNNGTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 304, 1221
Eco32I GATATC 1 cut(s) 707
Eco57I CTGAAG 4 cut(s) 91, 900, 1054, 1221
Eco88I CYCGRG 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 987
EcoRII CCWGG 1 cut(s) 124
EcoRV GATATC 1 cut(s) 707
EcoT14I CCWWGG 2 cut(s) 304, 1221
ErhI CCWWGG 2 cut(s) 304, 1221
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 9 cut(s) 308, 326, 616, 704, 817, 1129, 1230, 1251, 1309
FalI AAGNNNNNCTT 2 cut(s) 873, 905
FatI CATG 9 cut(s) 304, 322, 612, 700, 813, 1125, 1226, 1247, 1305
FauI CCCGC 1 cut(s) 1354
FauNDI CATATG 2 cut(s) 366, 495
FbaI TGATCA 2 cut(s) 15, 1176
FblI GTMKAC 1 cut(s) 1443
Fnu4HI GCNGC 6 cut(s) 251, 341, 657, 1356, 1359, 1432
FokI GGATG 4 cut(s) 470, 929, 1010, 1388
Fsp4HI GCNGC 6 cut(s) 251, 341, 657, 1356, 1359, 1432
FspBI CTAG 3 cut(s) 399, 468, 675
GlaI GCGC 2 cut(s) 795, 1035
GluI GCNGC 6 cut(s) 251, 341, 657, 1356, 1359, 1432
HaeIII GGCC 2 cut(s) 967, 1365
HapII CCGG 5 cut(s) 179, 576, 995, 1105, 1428
HhaI GCGC 2 cut(s) 796, 1036
Hin1II CATG 9 cut(s) 308, 326, 616, 704, 817, 1129, 1230, 1251, 1309
Hin6I GCGC 2 cut(s) 794, 1034
HinP1I GCGC 2 cut(s) 794, 1034
HinfI GANTC 5 cut(s) 35, 97, 361, 923, 1217
HpaII CCGG 5 cut(s) 179, 576, 995, 1105, 1428
HphI GGTGA 4 cut(s) 160, 290, 655, 1399
Hpy166II GTNNAC 1 cut(s) 1444
Hpy188I TCNGA 5 cut(s) 102, 166, 175, 1299, 1418
Hpy188III TCNNGA 3 cut(s) 61, 995, 1180
Hpy8I GTNNAC 1 cut(s) 1444
HpyAV CCTTC 7 cut(s) 115, 397, 556, 616, 680, 968, 1413
HpyCH4III ACNGT 2 cut(s) 148, 1273
HpyCH4IV ACGT 2 cut(s) 432, 735
HpyF10VI GCNNNNNNNGC 2 cut(s) 539, 1420
HpyF3I CTNAG 7 cut(s) 172, 212, 423, 516, 890, 948, 1415
HpySE526I ACGT 2 cut(s) 432, 735
Hsp92II CATG 9 cut(s) 308, 326, 616, 704, 817, 1129, 1230, 1251, 1309
HspAI GCGC 2 cut(s) 794, 1034
Kpn2I TCCGGA 1 cut(s) 994
Ksp22I TGATCA 2 cut(s) 15, 1176
Kzo9I GATC 4 cut(s) 15, 692, 756, 1176
LmnI GCTCC 1 cut(s) 810
Lsp1109I GCAGC 4 cut(s) 327, 1342, 1370, 1418
LweI GCATC 1 cut(s) 496
MaeI CTAG 3 cut(s) 399, 468, 675
MaeII ACGT 2 cut(s) 432, 735
MaeIII GTNAC 1 cut(s) 1267
MalI GATC 4 cut(s) 17, 694, 758, 1178
MboI GATC 4 cut(s) 15, 692, 756, 1176
MboII GAAGA 5 cut(s) 228, 702, 893, 983, 1214
MfeI CAATTG 1 cut(s) 11
MluCI AATT 5 cut(s) 11, 88, 711, 987, 1284
MlyI GAGTC 1 cut(s) 932
MroI TCCGGA 1 cut(s) 994
MroXI GAANNNNTTC 1 cut(s) 1458
MseI TTAA 4 cut(s) 153, 1049, 1083, 1097
MslI CAYNNNNRTG 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 1361
MspI CCGG 5 cut(s) 179, 576, 995, 1105, 1428
MspR9I CCNGG 6 cut(s) 126, 180, 576, 577, 1105, 1428
MunI CAATTG 1 cut(s) 11
Mva1269I GAATGC 4 cut(s) 451, 544, 719, 847
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 3 cut(s) 656, 796, 1036
MwoI GCNNNNNNNGC 2 cut(s) 539, 1420
NciI CCSGG 5 cut(s) 180, 576, 577, 1105, 1428
NcoI CCATGG 1 cut(s) 304
NdeI CATATG 2 cut(s) 366, 495
NdeII GATC 4 cut(s) 15, 692, 756, 1176
NlaIII CATG 9 cut(s) 308, 326, 616, 704, 817, 1129, 1230, 1251, 1309
NlaIV GGNNCC 1 cut(s) 1311
NspV TTCGAA 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 446
PctI GAATGC 4 cut(s) 451, 544, 719, 847
PdmI GAANNNNTTC 1 cut(s) 1458
PfeI GAWTC 4 cut(s) 35, 97, 361, 1217
PkrI GCNGC 6 cut(s) 252, 342, 658, 1357, 1360, 1433
PleI GAGTC 1 cut(s) 931
PpsI GAGTC 1 cut(s) 931
PshBI ATTAAT 1 cut(s) 1083
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 1311
PspPI GGNCC 1 cut(s) 1363
PstI CTGCAG 1 cut(s) 1360
RsaI GTAC 2 cut(s) 113, 634
RsaNI GTAC 2 cut(s) 112, 633
RseI CAYNNNNRTG 1 cut(s) 617
SaqAI TTAA 4 cut(s) 153, 1049, 1083, 1097
SatI GCNGC 6 cut(s) 251, 341, 657, 1356, 1359, 1432
Sau3AI GATC 4 cut(s) 15, 692, 756, 1176
Sau96I GGNCC 1 cut(s) 1363
ScaI AGTACT 1 cut(s) 634
SchI GAGTC 1 cut(s) 932
ScrFI CCNGG 6 cut(s) 126, 180, 576, 577, 1105, 1428
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 3 cut(s) 238, 1330, 1356
SfuI TTCGAA 1 cut(s) 204
SmaI CCCGGG 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 5 cut(s) 11, 88, 711, 987, 1284
SsiI CCGC 3 cut(s) 251, 656, 1361
SspMI CTAG 3 cut(s) 399, 468, 675
StyD4I CCNGG 6 cut(s) 124, 178, 574, 575, 1103, 1426
StyI CCWWGG 2 cut(s) 304, 1221
TaaI ACNGT 2 cut(s) 148, 1273
TaiI ACGT 2 cut(s) 435, 738
TaqI TCGA 4 cut(s) 33, 204, 759, 962
TaqII GACCGA 1 cut(s) 657
TasI AATT 5 cut(s) 11, 88, 711, 987, 1284
TatI WGTACW 1 cut(s) 632
TauI GCSGC 2 cut(s) 253, 659
TfiI GAWTC 4 cut(s) 35, 97, 361, 1217
Tru1I TTAA 4 cut(s) 153, 1049, 1083, 1097
Tru9I TTAA 4 cut(s) 153, 1049, 1083, 1097
TseI GCWGC 4 cut(s) 340, 1355, 1358, 1431
TspDTI ATGAA 9 cut(s) 353, 429, 635, 689, 1000, 1014, 1236, 1415, 1451
TspMI CCCGGG 1 cut(s) 575
VspI ATTAAT 1 cut(s) 1083
XapI RAATTY 1 cut(s) 987
XmaI CCCGGG 1 cut(s) 575
XmiI GTMKAC 1 cut(s) 1443
XmnI GAANNNNTTC 1 cut(s) 1458
XspI CTAG 3 cut(s) 399, 468, 675
ZrmI AGTACT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.