Rroxscaffold_4G00318040

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000039
Physical Location & Seq
Reverse (-)
43792488 .. 43797445
4958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318040.1

Sequence Viewer

Length: 1725 bp
ATGAAAGAGCTATACAAACAAAAGGGTTATGAGGTACCTACTTTCCAGAATGGAGTTTTTCCAGTGAAATGGCTGCGACAAATTGAGAAGGAAAAAGGTGATGATCCTTTATTGTTGGTCTTGGATGATGTTTGGTCTGGATCAGAATCTCTTCTTCAAAAGTTTGAATTCAAAATGTCAAACTACAAGATTTTAGTGACATCGAGGTCTGAATTTCCGGGATTCGGTTCTTCATATCATCTACAACTTTTAGATGATGACAATGCAATGCAATTATTTCATCATACAGCATCCTTGGGAGACAAGAGCACTCATATTCCAGAAAATCTTTCAAAAGAGATAGTAAAGCGCTGTAATGGATTTCCACTGGCCATTACAGTGGCGGGAAGATCACTCTGTGGTAAACCAATAGAAATATGGCGAAGCAGAGTAATTGAATGGTCGAAAGGTTATTCTATCCTGGATTTTGAGACCGAATTGCTTCTTCGCCTCAAAACTAGCTTAGATGCCTTGGATAATGAAATGCCTAGGGTTAAGGATTGTTTCTTGGACCTAGGTGTGTTTCCAGAAGATGCTACAATCGAAGTTACAACTCTCATTGACATGTGGGCAGAGTTGTATGATCTGGATTTAGGGACTTTATGCATTGCCAAACTCTATGAACTCAACAATCGCAGTCTAGCTAATTTTTCACGATTCAGAGGCCGTATTGGGTTGGTAGTTGAGGAGGATGGAGACTATAGTGACTACATTGTTAAGCAGCATGATTTGCTTAGAGAATTGGCTATCTACTATTCGAAACAAGATCCGATGGAGCGTAGAGAAAGAGTGATTATAGAAATATTTGGAAACAATCTTCCCAAGTGGTGGGGTGAACAGAAGTATCAACCCATGAAGGCTCGTCTAGTATCAATCTCAACTGATAAAGAATTCTCCATGAAATGGCCCCACATGCAACTACCTGAAGCACAGGTTTTAGTGTTGAATTTTCAGACGGATTATAACTTTGCCTTGCCCGAATTTGTGGAGAAAATGGAAAAGCTCAAGATGCTCGTTCTCAACAATTATAGCTCTTATAATCATGTGGATAATTTTCAACTTCTGGAGTCCTTATCAAATCTAAGGAGGATGAGATTAGAGGGCATCAATGTTTCTTTCATGACCAAGAGCCCAGTACAGTTGAAGACTCTACGCAAGTTATATTTGAGAAATGTTGAATCTCGCGGCAACGTTCTAGTCAAATTATCACATGTATTTCCAAATCTCAAGGAAATGGTCATTGATTTTTGCGAAGTCAAGAAATTGCCTGCACAGCTCTGCGATCTAGTTCATCTAACAAAGCTCACAATCATCAGTTGTTATAACCTTTCAAGCTTGCCTGAAGCGATTGGAAATCTTGTCAATTTAGAAGTATTGAGTCTAAGGAACTGTTTCAGTTTGACAGAGTTGCTGGAGTCAATTCGAAATCTCAAAAAGTTGACCTTTCTTGACATTCATCGTTGCGACGAACTCAAGGAGTTGCCTGAACAAATTGGTGAATTGAGGAGTTTAAGAAAGCTGCAAATGAGTAATTGCAATCAATTGAAAAAACTGCCTCAATCAGTTTCAGATCTTGAGCAGTTAGAGGAAGTGATATGCGAAGATCCGAAGGCAACACATCTGTGGACACCCTTGTTACCCACTCTCAAAAACCTTCGCATCGTGGTATTTAAGGGGAGATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

574

Amino Acids

66.7

Weight (kDa)

6.32

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 484 - 565 5.8e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1002, 1077, 1362
AasI GACNNNNNNGTC 1 cut(s) 205
Acc65I GGTACC 1 cut(s) 34
AccB1I GGYRCC 1 cut(s) 34
AccB7I CCANNNNNTGG 2 cut(s) 867, 942
AccII CGCG 1 cut(s) 1224
AciI CCGC 2 cut(s) 383, 1224
AclI AACGTT 1 cut(s) 1230
AclWI GGATC 4 cut(s) 98, 148, 800, 1637
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 5 cut(s) 167, 212, 929, 985, 1019
AcuI CTGAAG 2 cut(s) 984, 1401
AdeI CACNNNGTG 1 cut(s) 398
AfaI GTAC 2 cut(s) 36, 1176
AfeI AGCGCT 1 cut(s) 350
AfiI CCNNNNNNNGG 3 cut(s) 224, 867, 942
AflIII ACRYGT 2 cut(s) 603, 1249
AjnI CCWGG 1 cut(s) 459
AleI CACNNNNGTG 1 cut(s) 1660
AluBI AGCT 9 cut(s) 10, 501, 683, 1042, 1071, 1315, 1342, 1374, 1558
AluI AGCT 9 cut(s) 10, 501, 683, 1042, 1071, 1315, 1342, 1374, 1558
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 3 cut(s) 294, 464, 729
AlwI GGATC 4 cut(s) 98, 148, 800, 1637
Aor51HI AGCGCT 1 cut(s) 350
AoxI GGCC 3 cut(s) 369, 703, 944
ApeKI GCWGC 3 cut(s) 73, 760, 1558
ApoI RAATTY 5 cut(s) 167, 212, 929, 985, 1019
Asp700I GAANNNNTTC 3 cut(s) 150, 480, 1430
Asp718I GGTACC 1 cut(s) 34
AspA2I CCTAGG 2 cut(s) 527, 553
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 2 cut(s) 550, 945
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 3 cut(s) 110, 884, 1547
AsuII TTCGAA 2 cut(s) 797, 1462
AvaII GGWCC 1 cut(s) 550
AvrII CCTAGG 2 cut(s) 527, 553
BaeI ACNNNNGTAYC 2 cut(s) 866, 899
BalI TGGCCA 1 cut(s) 371
BanI GGYRCC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 1172
BbsI GAAGAC 1 cut(s) 1190
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 3 cut(s) 60, 772, 1545
BccI CCATC 2 cut(s) 725, 805
BceAI ACGGC 1 cut(s) 690
BciT130I CCWGG 1 cut(s) 461
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 3 cut(s) 294, 464, 729
BfaI CTAG 7 cut(s) 498, 528, 554, 680, 905, 1235, 1325
BfmI CTRYAG 1 cut(s) 739
BfoI RGCGCY 1 cut(s) 352
BglII AGATCT 1 cut(s) 1609
BisI GCNGC 4 cut(s) 74, 761, 1225, 1559
BlnI CCTAGG 2 cut(s) 527, 553
BlsI GCNGC 4 cut(s) 75, 762, 1226, 1560
Bme1390I CCNGG 2 cut(s) 219, 461
Bme18I GGWCC 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 550, 945
BmiI GGNNCC 2 cut(s) 36, 947
BmrFI CCNGG 2 cut(s) 219, 461
BmrI ACTGGG 1 cut(s) 1166
BmsI GCATC 6 cut(s) 299, 496, 562, 1038, 1152, 1707
BmuI ACTGGG 1 cut(s) 1166
BpiI GAAGAC 1 cut(s) 1190
BpmI CTGGAG 2 cut(s) 1124, 1472
Bpu14I TTCGAA 2 cut(s) 797, 1462
BpuEI CTTGAG 4 cut(s) 1028, 1250, 1496, 1634
BpuMI CCSGG 1 cut(s) 219
BsaBI GATNNNNATC 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 4 cut(s) 294, 510, 527, 553
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 867, 942
Bse1I ACTGG 3 cut(s) 62, 372, 1172
Bse3DI GCAATG 2 cut(s) 273, 645
Bse8I GATNNNNATC 1 cut(s) 145
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 4 cut(s) 294, 510, 527, 553
BseGI GGATG 4 cut(s) 130, 290, 736, 1134
BseJI GATNNNNATC 1 cut(s) 145
BseLI CCNNNNNNNGG 3 cut(s) 224, 867, 942
BseMI GCAATG 2 cut(s) 273, 645
BseNI ACTGG 3 cut(s) 62, 372, 1172
BseRI GAGGAG 2 cut(s) 740, 1558
BseXI GCAGC 3 cut(s) 60, 772, 1545
BsgI GTGCAG 1 cut(s) 1293
Bsh1236I CGCG 1 cut(s) 1224
BshFI GGCC 3 cut(s) 371, 705, 946
BshNI GGYRCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 3 cut(s) 224, 867, 942
BsmAI GTCTC 3 cut(s) 294, 464, 729
BsmFI GGGAC 1 cut(s) 649
BsnI GGCC 3 cut(s) 371, 705, 946
Bso31I GGTCTC 1 cut(s) 464
Bsp119I TTCGAA 2 cut(s) 797, 1462
Bsp1286I GDGCHC 2 cut(s) 311, 1172
Bsp143I GATC 8 cut(s) 103, 140, 389, 622, 805, 1321, 1609, 1642
BspACI CCGC 2 cut(s) 383, 1224
BspANI GGCC 3 cut(s) 371, 705, 946
BspFNI CGCG 1 cut(s) 1224
BspHI TCATGA 1 cut(s) 1158
BspLI GGNNCC 2 cut(s) 36, 947
BspPI GGATC 4 cut(s) 98, 148, 800, 1637
BspT104I TTCGAA 2 cut(s) 797, 1462
BspT107I GGYRCC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 2 cut(s) 273, 645
BsrI ACTGG 3 cut(s) 62, 372, 1172
BssECI CCNNGG 4 cut(s) 294, 510, 527, 553
BssMI GATC 8 cut(s) 103, 140, 389, 622, 805, 1321, 1609, 1642
BssT1I CCWWGG 4 cut(s) 294, 510, 527, 553
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 3 cut(s) 379, 1179, 1430
Bst6I CTCTTC 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 769
BstBI TTCGAA 2 cut(s) 797, 1462
BstC8I GCNNGC 2 cut(s) 1308, 1376
BstDEI CTNAG 4 cut(s) 502, 773, 1121, 1421
BstF5I GGATG 4 cut(s) 130, 290, 736, 1134
BstFNI CGCG 1 cut(s) 1224
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 8 cut(s) 106, 143, 392, 625, 808, 1324, 1612, 1645
BstMAI GTCTC 3 cut(s) 294, 464, 729
BstMBI GATC 8 cut(s) 103, 140, 389, 622, 805, 1321, 1609, 1642
BstMWI GCNNNNNNNGC 4 cut(s) 769, 952, 1048, 1312
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 3 cut(s) 607, 955, 1253
BstSCI CCNGG 2 cut(s) 217, 459
BstSFI CTRYAG 1 cut(s) 739
BstUI CGCG 1 cut(s) 1224
BstV1I GCAGC 3 cut(s) 60, 772, 1545
BstV2I GAAGAC 1 cut(s) 1190
BstX2I RGATCY 3 cut(s) 805, 1609, 1642
BstXI CCANNNNNNTGG 2 cut(s) 69, 379
BstYI RGATCY 3 cut(s) 805, 1609, 1642
BsuRI GGCC 3 cut(s) 371, 705, 946
BtsCI GGATG 4 cut(s) 130, 290, 736, 1134
BtsIMutI CAGTG 3 cut(s) 69, 365, 384
Cac8I GCNNGC 2 cut(s) 1308, 1376
CciI TCATGA 1 cut(s) 1158
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 550, 945
Csp6I GTAC 2 cut(s) 35, 1175
CviAII CATG 8 cut(s) 604, 764, 892, 937, 952, 1082, 1159, 1250
CviQI GTAC 2 cut(s) 35, 1175
DdeI CTNAG 4 cut(s) 502, 773, 1121, 1421
DpnI GATC 8 cut(s) 105, 142, 391, 624, 807, 1323, 1611, 1644
DpnII GATC 8 cut(s) 103, 140, 389, 622, 805, 1321, 1609, 1642
DraIII CACNNNGTG 1 cut(s) 398
DrdI GACNNNNNNGTC 1 cut(s) 205
DseDI GACNNNNNNGTC 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 4 cut(s) 294, 510, 527, 553
Eco24I GRGCYC 1 cut(s) 1172
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 550
Eco47III AGCGCT 1 cut(s) 350
Eco57I CTGAAG 2 cut(s) 984, 1401
EcoRI GAATTC 2 cut(s) 167, 929
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 4 cut(s) 294, 510, 527, 553
EcoT22I ATGCAT 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 1172
ErhI CCWWGG 4 cut(s) 294, 510, 527, 553
FaeI CATG 8 cut(s) 607, 767, 895, 940, 955, 1085, 1162, 1253
FalI AAGNNNNNCTT 2 cut(s) 1466, 1498
FaqI GGGAC 1 cut(s) 649
FatI CATG 8 cut(s) 603, 763, 891, 936, 951, 1081, 1158, 1249
FauI CCCGC 1 cut(s) 376
Fnu4HI GCNGC 4 cut(s) 74, 761, 1225, 1559
FokI GGATG 4 cut(s) 137, 277, 743, 1141
FriOI GRGCYC 1 cut(s) 1172
Fsp4HI GCNGC 4 cut(s) 74, 761, 1225, 1559
FspBI CTAG 7 cut(s) 498, 528, 554, 680, 905, 1235, 1325
GlaI GCGC 1 cut(s) 350
GluI GCNGC 4 cut(s) 74, 761, 1225, 1559
GsuI CTGGAG 2 cut(s) 1124, 1472
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 3 cut(s) 371, 705, 946
HapII CCGG 1 cut(s) 218
HhaI GCGC 1 cut(s) 351
Hin1II CATG 8 cut(s) 607, 767, 895, 940, 955, 1085, 1162, 1253
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HincII GTYRAC 1 cut(s) 1479
HindII GTYRAC 1 cut(s) 1479
HindIII AAGCTT 1 cut(s) 1372
HinfI GANTC 8 cut(s) 146, 222, 696, 1106, 1186, 1217, 1417, 1454
HpaII CCGG 1 cut(s) 218
HphI GGTGA 3 cut(s) 110, 884, 1547
Hpy166II GTNNAC 4 cut(s) 404, 875, 1479, 1665
Hpy188I TCNGA 7 cut(s) 145, 211, 701, 810, 993, 1609, 1647
Hpy8I GTNNAC 4 cut(s) 404, 875, 1479, 1665
Hpy99I CGWCG 1 cut(s) 1508
HpyAV CCTTC 4 cut(s) 82, 889, 1642, 1703
HpyCH4III ACNGT 3 cut(s) 379, 1179, 1430
HpyCH4IV ACGT 1 cut(s) 1230
HpyCH4V TGCA 7 cut(s) 266, 271, 645, 955, 1310, 1561, 1575
HpyF10VI GCNNNNNNNGC 4 cut(s) 769, 952, 1048, 1312
HpyF3I CTNAG 4 cut(s) 502, 773, 1121, 1421
HpySE526I ACGT 1 cut(s) 1230
Hsp92II CATG 8 cut(s) 607, 767, 895, 940, 955, 1085, 1162, 1253
HspAI GCGC 1 cut(s) 349
KpnI GGTACC 1 cut(s) 38
Kzo9I GATC 8 cut(s) 103, 140, 389, 622, 805, 1321, 1609, 1642
LmnI GCTCC 1 cut(s) 814
Lsp1109I GCAGC 3 cut(s) 60, 772, 1545
LweI GCATC 6 cut(s) 299, 496, 562, 1038, 1152, 1707
MaeI CTAG 7 cut(s) 498, 528, 554, 680, 905, 1235, 1325
MaeII ACGT 1 cut(s) 1230
MaeIII GTNAC 4 cut(s) 196, 586, 743, 1674
MalI GATC 8 cut(s) 105, 142, 391, 624, 807, 1323, 1611, 1644
MboI GATC 8 cut(s) 103, 140, 389, 622, 805, 1321, 1609, 1642
MboII GAAGA 9 cut(s) 143, 146, 222, 399, 476, 581, 848, 1195, 1652
MfeI CAATTG 1 cut(s) 1580
MflI RGATCY 3 cut(s) 805, 1609, 1642
MhlI GDGCHC 2 cut(s) 311, 1172
MlsI TGGCCA 1 cut(s) 371
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 4 cut(s) 1115, 1180, 1426, 1463
Mox20I TGGCCA 1 cut(s) 371
Mph1103I ATGCAT 1 cut(s) 647
MroXI GAANNNNTTC 3 cut(s) 150, 480, 1430
MscI TGGCCA 1 cut(s) 371
MseI TTAA 4 cut(s) 534, 756, 1550, 1710
MslI CAYNNNNRTG 3 cut(s) 377, 602, 1660
Msp20I TGGCCA 1 cut(s) 371
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 219, 461
MunI CAATTG 1 cut(s) 1580
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 1 cut(s) 1224
MwoI GCNNNNNNNGC 4 cut(s) 769, 952, 1048, 1312
NciI CCSGG 1 cut(s) 219
NdeII GATC 8 cut(s) 103, 140, 389, 622, 805, 1321, 1609, 1642
NlaIII CATG 8 cut(s) 607, 767, 895, 940, 955, 1085, 1162, 1253
NlaIV GGNNCC 2 cut(s) 36, 947
NmuCI GTSAC 2 cut(s) 196, 743
NsiI ATGCAT 1 cut(s) 647
NspI RCATGY 3 cut(s) 607, 955, 1253
NspV TTCGAA 2 cut(s) 797, 1462
OliI CACNNNNGTG 1 cut(s) 1660
PagI TCATGA 1 cut(s) 1158
PciI ACATGT 2 cut(s) 603, 1249
PdmI GAANNNNTTC 3 cut(s) 150, 480, 1430
PfeI GAWTC 4 cut(s) 146, 222, 696, 1217
PflMI CCANNNNNTGG 2 cut(s) 867, 942
PfoI TCCNGGA 2 cut(s) 217, 459
PkrI GCNGC 4 cut(s) 75, 762, 1226, 1560
PleI GAGTC 4 cut(s) 1114, 1180, 1425, 1462
PpsI GAGTC 4 cut(s) 1114, 1180, 1425, 1462
PscI ACATGT 2 cut(s) 603, 1249
PsiI TTATAA 3 cut(s) 1002, 1077, 1362
Psp1406I AACGTT 1 cut(s) 1230
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 36, 947
PspPI GGNCC 2 cut(s) 550, 945
PsuI RGATCY 3 cut(s) 805, 1609, 1642
RsaI GTAC 2 cut(s) 36, 1176
RsaNI GTAC 2 cut(s) 35, 1175
RseI CAYNNNNRTG 3 cut(s) 377, 602, 1660
SaqAI TTAA 4 cut(s) 534, 756, 1550, 1710
SatI GCNGC 4 cut(s) 74, 761, 1225, 1559
Sau3AI GATC 8 cut(s) 103, 140, 389, 622, 805, 1321, 1609, 1642
Sau96I GGNCC 2 cut(s) 550, 945
SchI GAGTC 4 cut(s) 1115, 1180, 1426, 1463
ScrFI CCNGG 2 cut(s) 219, 461
SduI GDGCHC 2 cut(s) 311, 1172
SfaNI GCATC 6 cut(s) 299, 496, 562, 1038, 1152, 1707
SfcI CTRYAG 1 cut(s) 739
SfuI TTCGAA 2 cut(s) 797, 1462
SinI GGWCC 1 cut(s) 550
SmiMI CAYNNNNRTG 3 cut(s) 377, 602, 1660
SmlI CTYRAG 4 cut(s) 1043, 1265, 1511, 1613
SmoI CTYRAG 4 cut(s) 1043, 1265, 1511, 1613
SsiI CCGC 2 cut(s) 383, 1224
SspI AATATT 1 cut(s) 843
SspMI CTAG 7 cut(s) 498, 528, 554, 680, 905, 1235, 1325
StyD4I CCNGG 2 cut(s) 217, 459
StyI CCWWGG 4 cut(s) 294, 510, 527, 553
TaaI ACNGT 3 cut(s) 379, 1179, 1430
TaiI ACGT 1 cut(s) 1233
TaqI TCGA 5 cut(s) 203, 443, 582, 797, 1462
TaqII GACCGA 1 cut(s) 488
TatI WGTACW 1 cut(s) 1174
TauI GCSGC 1 cut(s) 1227
TfiI GAWTC 4 cut(s) 146, 222, 696, 1217
Tru1I TTAA 4 cut(s) 534, 756, 1550, 1710
Tru9I TTAA 4 cut(s) 534, 756, 1550, 1710
TscAI CASTG 3 cut(s) 69, 372, 384
TseFI GTSAC 2 cut(s) 196, 743
TseI GCWGC 3 cut(s) 73, 760, 1558
Tsp45I GTSAC 2 cut(s) 196, 743
TspGWI ACGGA 1 cut(s) 1010
TspRI CASTG 3 cut(s) 69, 372, 384
Van91I CCANNNNNTGG 2 cut(s) 867, 942
VpaK11BI GGWCC 1 cut(s) 550
XapI RAATTY 5 cut(s) 167, 212, 929, 985, 1019
XceI RCATGY 3 cut(s) 607, 955, 1253
XcmI CCANNNNNNNNNTGG 1 cut(s) 414
XmaJI CCTAGG 2 cut(s) 527, 553
XmnI GAANNNNTTC 3 cut(s) 150, 480, 1430
XspI CTAG 7 cut(s) 498, 528, 554, 680, 905, 1235, 1325
Zsp2I ATGCAT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.