RchiOBHm_Chr2g0104151

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000039
Physical Location & Seq
Forward (+)
15554979 .. 15558990
4012 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47842

Sequence Viewer

Length: 2472 bp
ATGGACAACCTTGCTGCAGGGGGTGCCATGGGAGTACCATTTAATGTGCTCTATGAAGTCATTAAGGAAGTGGTGGTCAAGACTAAGATGTTTAAGCCTCTCCTCAAAGATCTTGACTTAACGATAGACTTGTTGAAACCACTGATCGATGAGATGGAAAAGTGCAATAAGGTGTTGGATGATCCAGATAATGAACTTAAAGGAATTAAAGTACAAATGCAGAAGGGTGCAGTGCTCATTCCCAAATGCTCTGAGGTTAGATTGTGGAATATTTACAAACAGTATAAATACACCAACGAACTTCTTGGATTAAAAAGCTCTCTTCGGAGTTTTTATGAGATATTGCATGTGCAAGTAGCAAGAGATGTGAAGAAGACGCGGGTTGAATTAGGACATATAGGGACCATTGTCCAGGATACTCATACAACAATACTGGAATTTGCAGAGAATGTGCAACAGAACCTGGTTATACATACCGCGGTAAAGGTTCAAGGTTGGGGTGCAGTACCGGTAGGTGCACCATTTACAGTTGGAGTGGATATACCTTTGAGGGAATTGAAGACTAAGCTTCTCAAGGATGAGAAAGTAACAATGCTTGTGCTCACTGCTCCAGGAGGATGTGGGAAAACCACTTTAGCAATAAAGTTTTGTGAAGATTACGAAGTCAAAGACAAATTTAAGGAGAATATCTTTTTTGTCACTGTCTCAAAGAAGTCCGATGACCGTGTTGTAAAAGAGCTTTATGACTGCAGGGGTTTTGAATTTCCTACTTTGCACAACGAAGTTGATGTGGTTAAGTGGCTACAGCAATTCCGGATTGAAGTAGGAAAGAATCCTGTACTTTTTGTCTTGGATGATGTTTGGTCTGGATCGGAATCCCTTCTTCAGAAGTTTGATGATTTCAAATTGCCAAATTCCAAGATTTTGGTGACATCAAGATTTAGATTTCCAAGATTTGGTTCTCAATATATTCTAGAACCGTTGAATATTGAAGATGCAGAAAGTCTTTTCAAACATTCAGCATCCTTGGGAGATCAGAGCTGTAATGCTCGTGAAGATATTATGAGAAAGATAATAGAGCATTTCAAAGGATCTCCACTTGCCATTACAGTGGTTGGAAGATCTCTTTGTGGAAAACCTGTAGAGTCCTGGCTGAAAAGAGCATCTACACTAAAAGGTGCTTCTATTCTTAATTATGAGGCTAGATTGCTAGATGGCCTTCAGAGTTGTTTAGACGCCTTTAATGAAGAAGAACATATCTTGAAGGAATGCTTCTTAGACCTGGGTTCATTTCCTGAAGACCAAAGGATCTCTGCTGCTGCTCTCATTGATATGTGGGCAGAACTATATAAGCTAGAAGATTTTAAGTCCATTGCGAACCTGCACGAGCTTGCCGCTCGAAGTCTGGCTAATCTTCTAATCACAAGGAAGGAGAAGAAGGAGGCAGATGGGTACTACAGTGAACACTTCATTACTCAGCATGATTTGCTTAGACAGTTGGCTATCTACCAGCCAAAGCTAGATGCAAATAATAAAAGACGGATCATAGACAAATGGGGAGACAATCTACCTGAGTGCTTGACAGGACAGAAGCATCAACCCATCAAGGCCCGCCTATTATCTATCTCCTCCGATGGAGTGTTCTCGACAAATTTGGACAACATTGAACTGGCAGAGGTTGAAGTTCTAGTTTTGAATTTTGACACACAGAACTATGCTTTACCCGAATTTGTGGTTAAGATGGACAAACTGAAGGTTTTAATAGTCACAAATCATGGTTTTTTACCTGCTGAATTGTGCAACATTCAACTGCTGGGTTCTTTGTCAAATCTGAGGAGAATCAGATTAGAGCGCATTTCAATTTCTTCCATAACCAAGAATCTCATACAGTTGAAGAGTGTAAAGAAGATATCTCTATTCATGTGCAACATTGGTCAAGCTTTCAGCAATTGTTCCCTTCAAATATCAGATGCATTGCCATATTTAGAGGAAATGAACATTGACTACTGCAATGATTTGGTGGAGTTGCCTGCCGCTCTCTGTGCTCTGGTTAACCTAAAGAAGCTCAGCATAGCCAACTCGCATAAGCTATCTGCCTTGCCTGAAGAGATTGGAAAGCTGGTCAATTTAGAAGTATTGCGGCTAAGGTCTTGTACAGACTTGGCAAAGTTGCCAGACTCAACTAGGAACCTAAAGAAGTTAAAGTTTCTAGACATAGCTGATTGCTTCAGCATTCGGGAATTGCCTGAAGACTTTGGTGGAATGACCAGTTTAAAGGAGATCAACATGAGAAAGTGTTCAAGATTGCAAGAGCTGCCTTCATCGGTTTTGGATCTTGAGCAGTTACAGGAAGTGGTATGTGATGAAGACACAGGTGATTTATGGGAACTCTTCTCACCCCATCTCAGAAACCTCCATATAACGCTGGTCGAAGAGAATGTCAACCTGAATTGGCTACATAAGCTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

823

Amino Acids

93.4

Weight (kDa)

6.03

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 3 - 135 1.8e-29 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 183 - 313 6.8e-11 NB-ARC domain
LRR_14 PF23598 679 - 784 4.9e-14 Leucine-rich repeat region
LRR_14 PF23598 730 - 791 3.3e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1389, 1795
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 956
AccBSI CCGCTC 2 cut(s) 1397, 2036
AccII CGCG 2 cut(s) 379, 479
AccIII TCCGGA 1 cut(s) 813
AciI CCGC 7 cut(s) 379, 477, 479, 1395, 1612, 2034, 2140
AclWI GGATC 6 cut(s) 176, 877, 1099, 1316, 1550, 2340
AcsI RAATTY 7 cut(s) 437, 674, 761, 913, 1651, 1696, 1727
AcuI CTGAAG 7 cut(s) 869, 1205, 1317, 1772, 2124, 2212, 2268
AcyI GRCGYC 1 cut(s) 1236
AfaI GTAC 6 cut(s) 36, 213, 507, 840, 1454, 2155
AfiI CCNNNNNNNGG 1 cut(s) 956
AgeI ACCGGT 1 cut(s) 508
AjnI CCWGG 5 cut(s) 411, 462, 610, 1148, 1281
AjuI GAANNNNNNNTTGG 2 cut(s) 943, 975
Alw21I GWGCWC 5 cut(s) 51, 237, 520, 603, 2047
Alw26I GTCTC 2 cut(s) 709, 1554
Alw44I GTGCAC 1 cut(s) 516
AlwI GGATC 6 cut(s) 176, 877, 1099, 1316, 1550, 2340
AlwNI CAGNNNCTG 1 cut(s) 463
Aor13HI TCCGGA 1 cut(s) 813
AoxI GGCC 2 cut(s) 1216, 1608
ApaLI GTGCAC 1 cut(s) 516
ApeKI GCWGC 4 cut(s) 14, 1316, 1319, 2314
ApoI RAATTY 7 cut(s) 437, 674, 761, 913, 1651, 1696, 1727
ArsI GACNNNNNNTTYG 2 cut(s) 2424, 2456
AsiGI ACCGGT 1 cut(s) 508
Asp700I GAANNNNTTC 2 cut(s) 879, 2296
AspLEI GCGC 1 cut(s) 1854
AspS9I GGNCC 2 cut(s) 402, 1609
AsuHPI GGTGA 3 cut(s) 940, 2387, 2388
AvaII GGWCC 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 520
BaeI ACNNNNGTAYC 2 cut(s) 1444, 1477
BanI GGYRCC 1 cut(s) 23
BauI CACGAG 2 cut(s) 1050, 1385
BbsI GAAGAC 5 cut(s) 380, 566, 1305, 2256, 2373
Bbv12I GWGCWC 5 cut(s) 51, 237, 520, 603, 2047
BbvI GCAGC 3 cut(s) 1303, 1306, 2301
BccI CCATC 7 cut(s) 148, 1208, 1442, 1610, 1628, 1735, 2409
BciT130I CCWGG 5 cut(s) 413, 464, 612, 1150, 1283
BciVI GTATCC 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 709, 1554
BfaI CTAG 8 cut(s) 974, 1203, 1211, 1355, 1520, 1688, 2184, 2210
BfmI CTRYAG 5 cut(s) 15, 748, 803, 1140, 1456
BfuAI ACCTGC 2 cut(s) 1389, 1795
BfuI GTATCC 1 cut(s) 409
BglII AGATCT 2 cut(s) 109, 1121
BisI GCNGC 7 cut(s) 15, 1317, 1320, 1395, 2034, 2141, 2315
BlpI GCTNAGC 1 cut(s) 2066
BlsI GCNGC 7 cut(s) 16, 1318, 1321, 1396, 2035, 2142, 2316
Bme1390I CCNGG 5 cut(s) 413, 464, 612, 1150, 1283
Bme18I GGWCC 1 cut(s) 402
BmgT120I GGNCC 2 cut(s) 402, 1609
BmiI GGNNCC 3 cut(s) 25, 403, 2189
BmrFI CCNGG 5 cut(s) 413, 464, 612, 1150, 1283
BmsI GCATC 6 cut(s) 985, 1031, 1172, 1513, 1603, 1960
BoxI GACNNNNGTC 1 cut(s) 407
BpiI GAAGAC 5 cut(s) 380, 566, 1305, 2256, 2373
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 2144
Bpu1102I GCTNAGC 1 cut(s) 2066
BpuEI CTTGAG 2 cut(s) 557, 2357
Bsa29I ATCGAT 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 874
BsaHI GRCGYC 1 cut(s) 1236
BsaJI CCNNGG 4 cut(s) 27, 477, 1026, 1282
BsaWI WCCGGW 2 cut(s) 508, 813
Bsc4I CCNNNNNNNGG 1 cut(s) 956
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 3 cut(s) 438, 1674, 2268
Bse3DI GCAATG 3 cut(s) 1371, 1973, 2017
Bse8I GATNNNNATC 1 cut(s) 874
BseAI TCCGGA 1 cut(s) 813
BseBI CCWGG 5 cut(s) 413, 464, 612, 1150, 1283
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 4 cut(s) 27, 477, 1026, 1282
BseGI GGATG 5 cut(s) 184, 583, 623, 859, 1022
BseJI GATNNNNATC 1 cut(s) 874
BseLI CCNNNNNNNGG 1 cut(s) 956
BseMI GCAATG 3 cut(s) 1371, 1973, 2017
BseMII CTCAG 6 cut(s) 243, 1490, 1563, 1823, 2080, 2419
BseNI ACTGG 3 cut(s) 438, 1674, 2268
BseRI GAGGAG 3 cut(s) 92, 1618, 1849
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 3 cut(s) 1303, 1306, 2301
BseYI CCCAGC 1 cut(s) 1813
BsgI GTGCAG 3 cut(s) 249, 522, 1367
Bsh1236I CGCG 2 cut(s) 379, 479
BshFI GGCC 2 cut(s) 1218, 1610
BshNI GGYRCC 1 cut(s) 23
BshTI ACCGGT 1 cut(s) 508
BshVI ATCGAT 1 cut(s) 147
BsiHKAI GWGCWC 5 cut(s) 51, 237, 520, 603, 2047
BsiSI CCGG 2 cut(s) 509, 814
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 1 cut(s) 956
BsmAI GTCTC 2 cut(s) 709, 1554
BsmFI GGGAC 1 cut(s) 415
BsmI GAATGC 2 cut(s) 1274, 2232
BsnI GGCC 2 cut(s) 1218, 1610
Bsp1286I GDGCHC 5 cut(s) 51, 237, 520, 603, 2047
Bsp13I TCCGGA 1 cut(s) 813
Bsp1407I TGTACA 1 cut(s) 2153
Bsp1720I GCTNAGC 1 cut(s) 2066
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 7 cut(s) 379, 477, 479, 1395, 1612, 2034, 2140
BspANI GGCC 2 cut(s) 1218, 1610
BspCNI CTCAG 6 cut(s) 244, 1489, 1564, 1824, 2079, 2418
BspDI ATCGAT 1 cut(s) 147
BspEI TCCGGA 1 cut(s) 813
BspFNI CGCG 2 cut(s) 379, 479
BspLI GGNNCC 3 cut(s) 25, 403, 2189
BspMAI CTGCAG 2 cut(s) 19, 752
BspMI ACCTGC 2 cut(s) 1389, 1795
BspPI GGATC 6 cut(s) 176, 877, 1099, 1316, 1550, 2340
BspT107I GGYRCC 1 cut(s) 23
BsrBI CCGCTC 2 cut(s) 1397, 2036
BsrDI GCAATG 3 cut(s) 1371, 1973, 2017
BsrFI RCCGGY 1 cut(s) 508
BsrGI TGTACA 1 cut(s) 2153
BsrI ACTGG 3 cut(s) 438, 1674, 2268
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 4 cut(s) 27, 477, 1026, 1282
BssNI GRCGYC 1 cut(s) 1236
BssSI CACGAG 2 cut(s) 1050, 1385
BssT1I CCWWGG 2 cut(s) 27, 1026
Bst2BI CACGAG 2 cut(s) 1050, 1385
Bst2UI CCWGG 5 cut(s) 413, 464, 612, 1150, 1283
Bst4CI ACNGT 9 cut(s) 282, 529, 703, 725, 981, 1111, 1460, 1497, 1890
Bst6I CTCTTC 5 cut(s) 327, 1889, 2100, 2396, 2427
BstACI GRCGYC 1 cut(s) 1236
BstAPI GCANNNNNTGC 3 cut(s) 23, 1486, 2314
BstAUI TGTACA 1 cut(s) 2153
BstC8I GCNNGC 3 cut(s) 1392, 1612, 2031
BstDSI CCRYGG 2 cut(s) 27, 477
BstF5I GGATG 5 cut(s) 184, 583, 623, 859, 1022
BstFNI CGCG 2 cut(s) 379, 479
BstHHI GCGC 1 cut(s) 1854
BstMAI GTCTC 2 cut(s) 709, 1554
BstMWI GCNNNNNNNGC 5 cut(s) 23, 1486, 2042, 2314, 2461
BstNI CCWGG 5 cut(s) 413, 464, 612, 1150, 1283
BstNSI RCATGY 1 cut(s) 350
BstPAI GACNNNNGTC 1 cut(s) 407
BstSCI CCNGG 5 cut(s) 411, 462, 610, 1148, 1281
BstSFI CTRYAG 5 cut(s) 15, 748, 803, 1140, 1456
BstSLI GKGCMC 1 cut(s) 520
BstUI CGCG 2 cut(s) 379, 479
BstV1I GCAGC 3 cut(s) 1303, 1306, 2301
BstV2I GAAGAC 5 cut(s) 380, 566, 1305, 2256, 2373
BstX2I RGATCY 5 cut(s) 109, 1091, 1121, 1308, 2332
BstXI CCANNNNNNTGG 2 cut(s) 925, 1111
BstYI RGATCY 5 cut(s) 109, 1091, 1121, 1308, 2332
Bsu15I ATCGAT 1 cut(s) 147
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 2 cut(s) 1218, 1610
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 2 cut(s) 27, 477
BtsCI GGATG 5 cut(s) 184, 583, 623, 859, 1022
BtsI GCAGTG 2 cut(s) 237, 603
BtsIMutI CAGTG 6 cut(s) 140, 237, 603, 699, 1116, 1465
BveI ACCTGC 2 cut(s) 1389, 1795
Cac8I GCNNGC 3 cut(s) 1392, 1612, 2031
CaiI CAGNNNCTG 1 cut(s) 463
CfoI GCGC 1 cut(s) 1854
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 2 cut(s) 402, 1609
Cfr42I CCGCGG 1 cut(s) 480
ClaI ATCGAT 1 cut(s) 147
CseI GACGC 2 cut(s) 385, 1244
CsiI ACCWGGT 1 cut(s) 462
Csp6I GTAC 6 cut(s) 35, 212, 506, 839, 1453, 2154
CspAI ACCGGT 1 cut(s) 508
CviAII CATG 6 cut(s) 28, 347, 1481, 1775, 1921, 2287
CviQI GTAC 6 cut(s) 35, 212, 506, 839, 1453, 2154
DraI TTTAAA 1 cut(s) 2274
Eam1104I CTCTTC 5 cut(s) 327, 1889, 2100, 2396, 2427
EarI CTCTTC 5 cut(s) 327, 1889, 2100, 2396, 2427
Eco130I CCWWGG 2 cut(s) 27, 1026
Eco32I GATATC 1 cut(s) 1911
Eco47I GGWCC 1 cut(s) 402
Eco57I CTGAAG 7 cut(s) 869, 1205, 1317, 1772, 2124, 2212, 2268
EcoRII CCWGG 5 cut(s) 411, 462, 610, 1148, 1281
EcoRV GATATC 1 cut(s) 1911
EcoT14I CCWWGG 2 cut(s) 27, 1026
EcoT22I ATGCAT 1 cut(s) 1975
ErhI CCWWGG 2 cut(s) 27, 1026
FaeI CATG 6 cut(s) 31, 350, 1484, 1778, 1924, 2290
FalI AAGNNNNNCTT 2 cut(s) 1256, 1288
FaqI GGGAC 1 cut(s) 415
FatI CATG 6 cut(s) 27, 346, 1480, 1774, 1920, 2286
FauI CCCGC 2 cut(s) 372, 1619
Fnu4HI GCNGC 7 cut(s) 15, 1317, 1320, 1395, 2034, 2141, 2315
FokI GGATG 5 cut(s) 191, 590, 630, 866, 1009
Fsp4HI GCNGC 7 cut(s) 15, 1317, 1320, 1395, 2034, 2141, 2315
FspBI CTAG 8 cut(s) 974, 1203, 1211, 1355, 1520, 1688, 2184, 2210
GlaI GCGC 1 cut(s) 1853
GluI GCNGC 7 cut(s) 15, 1317, 1320, 1395, 2034, 2141, 2315
GsaI CCCAGC 1 cut(s) 1817
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 2 cut(s) 1218, 1610
HapII CCGG 2 cut(s) 509, 814
HgaI GACGC 2 cut(s) 385, 1244
HhaI GCGC 1 cut(s) 1854
Hin1I GRCGYC 1 cut(s) 1236
Hin1II CATG 6 cut(s) 31, 350, 1484, 1778, 1924, 2290
Hin6I GCGC 1 cut(s) 1852
HinP1I GCGC 1 cut(s) 1852
HincII GTYRAC 2 cut(s) 2053, 2443
HindII GTYRAC 2 cut(s) 2053, 2443
HindIII AAGCTT 3 cut(s) 566, 1938, 2462
HinfI GANTC 6 cut(s) 832, 875, 1145, 1839, 1879, 2177
HpaI GTTAAC 1 cut(s) 2053
HpaII CCGG 2 cut(s) 509, 814
HphI GGTGA 3 cut(s) 940, 2387, 2388
Hpy166II GTNNAC 4 cut(s) 518, 1463, 2053, 2443
Hpy8I GTNNAC 4 cut(s) 518, 1463, 2053, 2443
HpyAV CCTTC 9 cut(s) 217, 890, 1229, 1258, 1423, 1432, 1747, 1967, 2328
HpyCH4III ACNGT 9 cut(s) 282, 529, 703, 725, 981, 1111, 1460, 1497, 1890
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 1486, 2042, 2314, 2461
Hsp92I GRCGYC 1 cut(s) 1236
Hsp92II CATG 6 cut(s) 31, 350, 1484, 1778, 1924, 2290
HspAI GCGC 1 cut(s) 1852
Kpn2I TCCGGA 1 cut(s) 813
KspAI GTTAAC 1 cut(s) 2053
KspI CCGCGG 1 cut(s) 480
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 3 cut(s) 1303, 1306, 2301
LweI GCATC 6 cut(s) 985, 1031, 1172, 1513, 1603, 1960
MabI ACCWGGT 1 cut(s) 462
MaeI CTAG 8 cut(s) 974, 1203, 1211, 1355, 1520, 1688, 2184, 2210
MaeIII GTNAC 5 cut(s) 586, 697, 928, 1765, 2343
MbiI CCGCTC 2 cut(s) 1397, 2036
MfeI CAATTG 1 cut(s) 1948
MflI RGATCY 5 cut(s) 109, 1091, 1121, 1308, 2332
MhlI GDGCHC 5 cut(s) 51, 237, 520, 603, 2047
MlyI GAGTC 2 cut(s) 1154, 2171
MmeI TCCRAC 3 cut(s) 156, 511, 1096
Mph1103I ATGCAT 1 cut(s) 1975
MroI TCCGGA 1 cut(s) 813
MroXI GAANNNNTTC 2 cut(s) 879, 2296
MslI CAYNNNNRTG 2 cut(s) 1109, 1331
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 509, 814
MspR9I CCNGG 5 cut(s) 413, 464, 612, 1150, 1283
MunI CAATTG 1 cut(s) 1948
Mva1269I GAATGC 2 cut(s) 1274, 2232
MvaI CCWGG 5 cut(s) 413, 464, 612, 1150, 1283
MvnI CGCG 2 cut(s) 379, 479
MwoI GCNNNNNNNGC 5 cut(s) 23, 1486, 2042, 2314, 2461
NcoI CCATGG 1 cut(s) 27
NlaIII CATG 6 cut(s) 31, 350, 1484, 1778, 1924, 2290
NlaIV GGNNCC 3 cut(s) 25, 403, 2189
NmuCI GTSAC 3 cut(s) 697, 928, 1765
NsiI ATGCAT 1 cut(s) 1975
NspI RCATGY 1 cut(s) 350
PctI GAATGC 2 cut(s) 1274, 2232
PdmI GAANNNNTTC 2 cut(s) 879, 2296
PfeI GAWTC 4 cut(s) 832, 875, 1839, 1879
PflMI CCANNNNNTGG 1 cut(s) 956
PfoI TCCNGGA 2 cut(s) 411, 610
PinAI ACCGGT 1 cut(s) 508
PkrI GCNGC 7 cut(s) 16, 1318, 1321, 1396, 2035, 2142, 2316
PleI GAGTC 2 cut(s) 1153, 2171
PpsI GAGTC 2 cut(s) 1153, 2171
PshAI GACNNNNGTC 1 cut(s) 407
Psp6I CCWGG 5 cut(s) 411, 462, 610, 1148, 1281
PspFI CCCAGC 1 cut(s) 1813
PspGI CCWGG 5 cut(s) 411, 462, 610, 1148, 1281
PspN4I GGNNCC 3 cut(s) 25, 403, 2189
PspPI GGNCC 2 cut(s) 402, 1609
PsrI GAACNNNNNNTAC 2 cut(s) 1988, 2020
PstI CTGCAG 2 cut(s) 19, 752
PstNI CAGNNNCTG 1 cut(s) 463
PsuI RGATCY 5 cut(s) 109, 1091, 1121, 1308, 2332
RsaI GTAC 6 cut(s) 36, 213, 507, 840, 1454, 2155
RsaNI GTAC 6 cut(s) 35, 212, 506, 839, 1453, 2154
RseI CAYNNNNRTG 2 cut(s) 1109, 1331
SacII CCGCGG 1 cut(s) 480
SatI GCNGC 7 cut(s) 15, 1317, 1320, 1395, 2034, 2141, 2315
Sau96I GGNCC 2 cut(s) 402, 1609
SchI GAGTC 2 cut(s) 1154, 2171
ScrFI CCNGG 5 cut(s) 413, 464, 612, 1150, 1283
SduI GDGCHC 5 cut(s) 51, 237, 520, 603, 2047
SexAI ACCWGGT 1 cut(s) 462
SfaNI GCATC 6 cut(s) 985, 1031, 1172, 1513, 1603, 1960
SfcI CTRYAG 5 cut(s) 15, 748, 803, 1140, 1456
Sfr303I CCGCGG 1 cut(s) 480
SgrBI CCGCGG 1 cut(s) 480
SinI GGWCC 1 cut(s) 402
SmiMI CAYNNNNRTG 2 cut(s) 1109, 1331
SmlI CTYRAG 2 cut(s) 572, 2336
SmoI CTYRAG 2 cut(s) 572, 2336
SsiI CCGC 7 cut(s) 379, 477, 479, 1395, 1612, 2034, 2140
SspI AATATT 2 cut(s) 271, 988
SspMI CTAG 8 cut(s) 974, 1203, 1211, 1355, 1520, 1688, 2184, 2210
StyD4I CCNGG 5 cut(s) 411, 462, 610, 1148, 1281
StyI CCWWGG 2 cut(s) 27, 1026
TaaI ACNGT 9 cut(s) 282, 529, 703, 725, 981, 1111, 1460, 1497, 1890
TaqI TCGA 4 cut(s) 147, 1399, 1646, 2430
TatI WGTACW 3 cut(s) 211, 838, 2153
TauI GCSGC 3 cut(s) 1397, 2036, 2143
TfiI GAWTC 4 cut(s) 832, 875, 1839, 1879
TscAI CASTG 6 cut(s) 147, 237, 610, 706, 1116, 1465
TseFI GTSAC 3 cut(s) 697, 928, 1765
TseI GCWGC 4 cut(s) 14, 1316, 1319, 2314
Tsp45I GTSAC 3 cut(s) 697, 928, 1765
TspDTI ATGAA 9 cut(s) 69, 207, 1260, 1278, 1459, 1909, 2009, 2310, 2379
TspGWI ACGGA 1 cut(s) 1555
TspRI CASTG 6 cut(s) 147, 237, 610, 706, 1116, 1465
Van91I CCANNNNNTGG 1 cut(s) 956
VneI GTGCAC 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 402
XapI RAATTY 7 cut(s) 437, 674, 761, 913, 1651, 1696, 1727
XbaI TCTAGA 2 cut(s) 973, 2209
XceI RCATGY 1 cut(s) 350
XmnI GAANNNNTTC 2 cut(s) 879, 2296
XspI CTAG 8 cut(s) 974, 1203, 1211, 1355, 1520, 1688, 2184, 2210
Zsp2I ATGCAT 1 cut(s) 1975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.