Rmu_sc0003787.1_g000024

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003787.1
OG0000039
Physical Location & Seq
Reverse (-)
116552 .. 120354
3803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003787.1_g000024.1.cds

Sequence Viewer

Length: 2475 bp
atggccgtggtgtcggactttgttctagagaaagcattcgaagcagtgtatgttggcgttgaagacctgatcgtcaagaatttcatttttaagtctctcttcaacgacgccaaatccaggctcgatgatttggcaccactgatcaaggagatggcgcaatacaaccagaaaatgggtcgcccagagaaggaactggaagctttaaagggagtcatggagaaaggccaagagctcgtcaacaagtgctcaacgattacgcgatggagccccttcaaaaagtacaagtacgccaggaaacttctccaatggcaggaatctcttaaaacaccgttggagaaactcaaggtgcaagaattagggcagataatgaagatcgatgccgcggttggtgatattcatcgcatggtgctgaaacaacaacccgcagaaagttctagtagtacacgactcgaacttctaccacttccacggcttatagttggaatggatggtcctttgaattatttgaagaaaaagtttcttgcggatgatcgggtgtcgaggcttgtgctcactgctcctggaggctgtgggaaaaccactctcgccacaatgttttgtcaagatgaagaggtcaaaggtaaattcaaggacaatattatcttcattactgtttcacgagaaggtaatttggaacttgttgtgaaacgactttgtgaatccgtgggttctccggttcctacttccaaagacaacgtatatatgcttcgatggatgcaaacatttttcaagggaagaccaaatcctttgctgttggtcctcgatgatgtttggtctgaatcagaatccattcttcatagctttcaattatttgaattgtccaatcacaagattttagtaacatcaagatctgaatttccaaattttggttcttcatatccattaaaattattgtatgctgacaaagctatggaacttttttatcactcaacatcattgggagataagggctctcctgaacgagaaaaactctcaagaaagatagtaaagcgttgcaacggatttccactagctattacagtggttggaagatcactttctgggcaacctatagagctctggagaaaaagagtatttgaatggtctaaagattcttctattctagatgctgagacggaattgtttctttgtctccaaagcagcttagatgctttggataaaaaacttgcaattgtcaaagattgttacttggacctgggatcttttcctgaagacaaagaaatccaagttgatgacctcattgatatgtgggcagagttatatgatatagatgatgacagtgtgtgctttgcaaatgtctatgaacttgccaataggaatctggctaatctggttgacagaaggtacagctatacgaagatggagggggacgatttctacggtgaactgtttgtgacccaacatgatttgcttagagagctagctatttacaatgctaaggtagactttgtcacccaacatgatttgcttagagagttagctatttacaatgctaagctagacccggtagagcaaagacaaagaatgaccatagaaataaggggaaacaaaatccccaagtggtggagagaacaaaaatgtcaccctatcaaggctcgcttgttatccattactacaactactgacttcgatatggaatggcccaacttgcaactaccagaagcagaagtttttgtcttgcattttcagagcccaagtagttacagcttgcccgcgtttgtacagaaaatggataaattgaaggtactggtaatagacggcgatggcgaattaataaattttgaactactcggtttgttaccaaatctaaagagaatcagtttcattggtctccgaattggtttcttgacccaccagcccatacaactgaaaagtctaaagaagatatctttcaagtattgtgacgcgaagggtatcggcgaaggtgttttcagaatgccggatgcatttccgaatttggaggaattatacctacggatgaatttccttaggtatgttagagttcaagaatttcttgcggagtgctgcaatctgattcatttaaagaagattaatatcgtctgctatattgggctatgtgacttgcccgaagaaatcggaaatttggtcaacttagaagtactgaggctaaggtcttgtattcatctttcaaagcttcccagttccatcagcaacctcaaaaagttaaacttcattgacatatgtggatgctggagcattgagttgcctaaaaacattggtgaattgagcagtttaagaaaggtggacatgagggattgcttaacagtggatgagctgcctccatcagttttagatcttcatcagttagaggaagtgatatgcaacgatgaagacaaaggcagtttatgggaaccctttctacccactctcacaaacctacgcgtggtggtgattcctcgaacccaaccaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

824

Amino Acids

94.56

Weight (kDa)

6.18

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 133
AccB7I CCANNNNNTGG 3 cut(s) 172, 905, 1602
AccI GTMKAC 1 cut(s) 1482
AccII CGCG 5 cut(s) 259, 383, 1754, 1946, 2442
AciI CCGC 6 cut(s) 381, 383, 423, 524, 1752, 2057
AclWI GGATC 1 cut(s) 1246
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 9 cut(s) 79, 623, 893, 901, 1816, 1993, 2020, 2048, 2140
AcuI CTGAAG 1 cut(s) 1269
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 7 cut(s) 281, 287, 442, 1385, 1761, 1785, 2160
AfiI CCNNNNNNNGG 8 cut(s) 117, 172, 187, 310, 905, 1602, 1630, 2443
AflIII ACRYGT 1 cut(s) 2440
AjnI CCWGG 4 cut(s) 116, 290, 559, 1233
AjuI GAANNNNNNNTTGG 2 cut(s) 892, 924
Alw21I GWGCWC 4 cut(s) 234, 248, 552, 1098
Alw26I GTCTC 4 cut(s) 99, 1145, 1175, 1874
AlwI GGATC 1 cut(s) 1246
AoxI GGCC 3 cut(s) 3, 223, 1679
ApeKI GCWGC 3 cut(s) 1179, 2064, 2335
ApoI RAATTY 9 cut(s) 79, 623, 893, 901, 1816, 1993, 2020, 2048, 2140
AseI ATTAAT 2 cut(s) 1811, 2091
Asp700I GAANNNNTTC 4 cut(s) 35, 828, 1161, 2415
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 4 cut(s) 491, 796, 1231, 1680
AsuC2I CCSGG 1 cut(s) 1544
AsuHPI GGTGA 6 cut(s) 401, 1433, 1483, 1613, 2291, 2461
AsuII TTCGAA 1 cut(s) 39
AsuNHI GCTAGC 1 cut(s) 1459
AvaII GGWCC 3 cut(s) 491, 796, 1231
AxyI CCTNAGG 1 cut(s) 2027
BanI GGYRCC 1 cut(s) 133
BanII GRGCYC 5 cut(s) 234, 269, 992, 1098, 1733
BarI GAAGNNNNNNTAC 2 cut(s) 729, 761
BauI CACGAG 1 cut(s) 657
BbsI GAAGAC 4 cut(s) 69, 781, 1257, 2397
Bbv12I GWGCWC 4 cut(s) 234, 248, 552, 1098
BbvI GCAGC 3 cut(s) 1191, 2051, 2322
BccI CCATC 8 cut(s) 145, 255, 482, 744, 1393, 1796, 2213, 2350
BceAI ACGGC 2 cut(s) 485, 1813
BcgI CGANNNNNNTGC 2 cut(s) 529, 563
BciT130I CCWGG 4 cut(s) 118, 292, 561, 1235
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 1 cut(s) 1544
BcoDI GTCTC 4 cut(s) 99, 1145, 1175, 1874
BfaI CTAG 6 cut(s) 26, 435, 1049, 1142, 1460, 1538
BfmI CTRYAG 1 cut(s) 1089
BglII AGATCT 2 cut(s) 887, 2353
BisI GCNGC 4 cut(s) 381, 1180, 2065, 2336
BlpI GCTNAGC 1 cut(s) 1533
BlsI GCNGC 4 cut(s) 382, 1181, 2066, 2337
BmcAI AGTACT 1 cut(s) 2160
Bme1390I CCNGG 5 cut(s) 118, 292, 561, 1235, 1544
Bme18I GGWCC 3 cut(s) 491, 796, 1231
BmgT120I GGNCC 4 cut(s) 491, 796, 1231, 1680
BmiI GGNNCC 4 cut(s) 135, 266, 717, 2412
BmrFI CCNGG 5 cut(s) 118, 292, 561, 1235, 1544
BmrI ACTGGG 1 cut(s) 2193
BmsI GCATC 6 cut(s) 367, 744, 1135, 1177, 1972, 2237
BmtI GCTAGC 1 cut(s) 1463
BmuI ACTGGG 1 cut(s) 2193
BpiI GAAGAC 4 cut(s) 69, 781, 1257, 2397
BplI GAGNNNNNCTC 2 cut(s) 993, 1025
BpmI CTGGAG 3 cut(s) 582, 1120, 2272
Bpu10I CCTNAGC 2 cut(s) 1476, 2168
Bpu1102I GCTNAGC 1 cut(s) 1533
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 2 cut(s) 326, 997
BpuMI CCSGG 1 cut(s) 1544
Bsa29I ATCGAT 1 cut(s) 375
BsaBI GATNNNNATC 3 cut(s) 396, 2093, 2358
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 1874
BsaJI CCNNGG 5 cut(s) 6, 381, 467, 702, 1234
BsaWI WCCGGW 1 cut(s) 712
Bsc4I CCNNNNNNNGG 8 cut(s) 117, 172, 187, 310, 905, 1602, 1630, 2443
Bse1I ACTGG 3 cut(s) 198, 1791, 2199
Bse21I CCTNAGG 1 cut(s) 2027
Bse8I GATNNNNATC 3 cut(s) 396, 2093, 2358
BseBI CCWGG 4 cut(s) 118, 292, 561, 1235
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 5 cut(s) 6, 381, 467, 702, 1234
BseGI GGATG 7 cut(s) 493, 532, 759, 1987, 2022, 2252, 2335
BseJI GATNNNNATC 3 cut(s) 396, 2093, 2358
BseLI CCNNNNNNNGG 8 cut(s) 117, 172, 187, 310, 905, 1602, 1630, 2443
BseMII CTCAG 2 cut(s) 1140, 2153
BseNI ACTGG 3 cut(s) 198, 1791, 2199
BseXI GCAGC 3 cut(s) 1191, 2051, 2322
Bsh1236I CGCG 5 cut(s) 259, 383, 1754, 1946, 2442
BshFI GGCC 3 cut(s) 5, 225, 1681
BshNI GGYRCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 375
BsiHKAI GWGCWC 4 cut(s) 234, 248, 552, 1098
BsiSI CCGG 3 cut(s) 713, 1544, 1979
BslFI GGGAC 1 cut(s) 1421
BslI CCNNNNNNNGG 8 cut(s) 117, 172, 187, 310, 905, 1602, 1630, 2443
BsmAI GTCTC 4 cut(s) 99, 1145, 1175, 1874
BsmBI CGTCTC 1 cut(s) 1145
BsmFI GGGAC 1 cut(s) 1421
BsmI GAATGC 2 cut(s) 35, 1980
BsnI GGCC 3 cut(s) 5, 225, 1681
Bso31I GGTCTC 1 cut(s) 1874
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 7 cut(s) 234, 248, 269, 552, 992, 1098, 1733
Bsp1407I TGTACA 1 cut(s) 1759
Bsp143I GATC 8 cut(s) 69, 141, 372, 529, 887, 1070, 1238, 2353
Bsp1720I GCTNAGC 1 cut(s) 1533
BspACI CCGC 6 cut(s) 381, 383, 423, 524, 1752, 2057
BspANI GGCC 3 cut(s) 5, 225, 1681
BspCNI CTCAG 2 cut(s) 1141, 2154
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 5 cut(s) 259, 383, 1754, 1946, 2442
BspLI GGNNCC 4 cut(s) 135, 266, 717, 2412
BspOI GCTAGC 1 cut(s) 1463
BspPI GGATC 1 cut(s) 1246
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 1874
BsrGI TGTACA 1 cut(s) 1759
BsrI ACTGG 3 cut(s) 198, 1791, 2199
BssECI CCNNGG 5 cut(s) 6, 381, 467, 702, 1234
BssMI GATC 8 cut(s) 69, 141, 372, 529, 887, 1070, 1238, 2353
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 657
Bst2BI CACGAG 1 cut(s) 657
Bst2UI CCWGG 4 cut(s) 118, 292, 561, 1235
Bst4CI ACNGT 7 cut(s) 330, 652, 1060, 1319, 1421, 1428, 2326
Bst6I CTCTTC 2 cut(s) 104, 603
BstACI GRCGYC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 1759
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 4 cut(s) 1461, 1636, 1748, 1752
BstDSI CCRYGG 4 cut(s) 6, 381, 467, 702
BstF5I GGATG 7 cut(s) 493, 532, 759, 1987, 2022, 2252, 2335
BstFNI CGCG 5 cut(s) 259, 383, 1754, 1946, 2442
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 8 cut(s) 72, 144, 375, 532, 890, 1073, 1241, 2356
BstMAI GTCTC 4 cut(s) 99, 1145, 1175, 1874
BstMBI GATC 8 cut(s) 69, 141, 372, 529, 887, 1070, 1238, 2353
BstMWI GCNNNNNNNGC 4 cut(s) 41, 944, 1456, 1687
BstNI CCWGG 4 cut(s) 118, 292, 561, 1235
BstSCI CCNGG 5 cut(s) 116, 290, 559, 1233, 1542
BstSFI CTRYAG 1 cut(s) 1089
BstUI CGCG 5 cut(s) 259, 383, 1754, 1946, 2442
BstV1I GCAGC 3 cut(s) 1191, 2051, 2322
BstV2I GAAGAC 4 cut(s) 69, 781, 1257, 2397
BstX2I RGATCY 3 cut(s) 887, 1238, 2353
BstYI RGATCY 3 cut(s) 887, 1238, 2353
Bsu15I ATCGAT 1 cut(s) 375
Bsu36I CCTNAGG 1 cut(s) 2027
BsuRI GGCC 3 cut(s) 5, 225, 1681
BsuTUI ATCGAT 1 cut(s) 375
BtgI CCRYGG 4 cut(s) 6, 381, 467, 702
BtgZI GCGATG 3 cut(s) 274, 383, 1815
BtsCI GGATG 7 cut(s) 493, 532, 759, 1987, 2022, 2252, 2335
BtsI GCAGTG 2 cut(s) 51, 552
BtsIMutI CAGTG 6 cut(s) 51, 137, 552, 1065, 1324, 2331
Cac8I GCNNGC 4 cut(s) 1461, 1636, 1748, 1752
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 4 cut(s) 491, 796, 1231, 1680
Cfr42I CCGCGG 1 cut(s) 384
ClaI ATCGAT 1 cut(s) 375
CseI GACGC 2 cut(s) 116, 1952
Csp6I GTAC 7 cut(s) 280, 286, 441, 1384, 1760, 1784, 2159
CviAII CATG 5 cut(s) 214, 403, 1442, 1499, 2308
CviQI GTAC 7 cut(s) 280, 286, 441, 1384, 1760, 1784, 2159
DpnI GATC 8 cut(s) 71, 143, 374, 531, 889, 1072, 1240, 2355
DpnII GATC 8 cut(s) 69, 141, 372, 529, 887, 1070, 1238, 2353
DraI TTTAAA 2 cut(s) 204, 2082
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 104, 603
EarI CTCTTC 2 cut(s) 104, 603
Ecl136II GAGCTC 2 cut(s) 232, 1096
Eco24I GRGCYC 5 cut(s) 234, 269, 992, 1098, 1733
Eco31I GGTCTC 1 cut(s) 1874
Eco32I GATATC 1 cut(s) 1926
Eco47I GGWCC 3 cut(s) 491, 796, 1231
Eco53kI GAGCTC 2 cut(s) 232, 1096
Eco57I CTGAAG 1 cut(s) 1269
Eco81I CCTNAGG 1 cut(s) 2027
EcoICRI GAGCTC 2 cut(s) 232, 1096
EcoRII CCWGG 4 cut(s) 116, 290, 559, 1233
EcoRV GATATC 1 cut(s) 1926
EcoT22I ATGCAT 1 cut(s) 1987
EcoT38I GRGCYC 5 cut(s) 234, 269, 992, 1098, 1733
Esp3I CGTCTC 1 cut(s) 1145
FaeI CATG 5 cut(s) 217, 406, 1445, 1502, 2311
FaqI GGGAC 1 cut(s) 1421
FatI CATG 5 cut(s) 213, 402, 1441, 1498, 2307
FauI CCCGC 2 cut(s) 430, 1759
FauNDI CATATG 1 cut(s) 2240
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 1 cut(s) 1482
Fnu4HI GCNGC 4 cut(s) 381, 1180, 2065, 2336
FokI GGATG 7 cut(s) 500, 539, 766, 1994, 2029, 2259, 2342
FriOI GRGCYC 5 cut(s) 234, 269, 992, 1098, 1733
Fsp4HI GCNGC 4 cut(s) 381, 1180, 2065, 2336
FspBI CTAG 6 cut(s) 26, 435, 1049, 1142, 1460, 1538
GlaI GCGC 1 cut(s) 156
GluI GCNGC 4 cut(s) 381, 1180, 2065, 2336
GsuI CTGGAG 3 cut(s) 582, 1120, 2272
HaeIII GGCC 3 cut(s) 5, 225, 1681
HapII CCGG 3 cut(s) 713, 1544, 1979
HgaI GACGC 2 cut(s) 116, 1952
HhaI GCGC 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 5 cut(s) 217, 406, 1445, 1502, 2311
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HincII GTYRAC 3 cut(s) 238, 1375, 2149
HindII GTYRAC 3 cut(s) 238, 1375, 2149
HindIII AAGCTT 2 cut(s) 198, 2192
HpaII CCGG 3 cut(s) 713, 1544, 1979
HphI GGTGA 6 cut(s) 401, 1433, 1483, 1613, 2291, 2461
Hpy166II GTNNAC 7 cut(s) 238, 443, 1375, 1424, 1483, 2149, 2305
Hpy8I GTNNAC 7 cut(s) 238, 443, 1375, 1424, 1483, 2149, 2305
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 7 cut(s) 181, 280, 656, 1374, 1774, 1942, 1955
HpyCH4III ACNGT 7 cut(s) 330, 652, 1060, 1319, 1421, 1428, 2326
HpyCH4IV ACGT 1 cut(s) 735
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 944, 1456, 1687
HpySE526I ACGT 1 cut(s) 735
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 5 cut(s) 217, 406, 1445, 1502, 2311
HspAI GCGC 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 141
KspI CCGCGG 1 cut(s) 384
Kzo9I GATC 8 cut(s) 69, 141, 372, 529, 887, 1070, 1238, 2353
LmnI GCTCC 3 cut(s) 264, 562, 2253
Lsp1109I GCAGC 3 cut(s) 1191, 2051, 2322
LweI GCATC 6 cut(s) 367, 744, 1135, 1177, 1972, 2237
MaeI CTAG 6 cut(s) 26, 435, 1049, 1142, 1460, 1538
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 9 cut(s) 877, 1223, 1432, 1489, 1619, 1739, 1836, 1940, 2117
MalI GATC 8 cut(s) 71, 143, 374, 531, 889, 1072, 1240, 2355
MboI GATC 8 cut(s) 69, 141, 372, 529, 887, 1070, 1238, 2353
MfeI CAATTG 1 cut(s) 1209
MflI RGATCY 3 cut(s) 887, 1238, 2353
MhlI GDGCHC 7 cut(s) 234, 248, 269, 552, 992, 1098, 1733
MluI ACGCGT 1 cut(s) 2440
MlyI GAGTC 2 cut(s) 219, 441
MmeI TCCRAC 3 cut(s) 312, 460, 1045
Mph1103I ATGCAT 1 cut(s) 1987
MroXI GAANNNNTTC 4 cut(s) 35, 828, 1161, 2415
MslI CAYNNNNRTG 1 cut(s) 1283
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 3 cut(s) 713, 1544, 1979
MspR9I CCNGG 5 cut(s) 118, 292, 561, 1235, 1544
MunI CAATTG 1 cut(s) 1209
Mva1269I GAATGC 2 cut(s) 35, 1980
MvaI CCWGG 4 cut(s) 118, 292, 561, 1235
MvnI CGCG 5 cut(s) 259, 383, 1754, 1946, 2442
MwoI GCNNNNNNNGC 4 cut(s) 41, 944, 1456, 1687
NciI CCSGG 1 cut(s) 1544
NdeI CATATG 1 cut(s) 2240
NdeII GATC 8 cut(s) 69, 141, 372, 529, 887, 1070, 1238, 2353
NheI GCTAGC 1 cut(s) 1459
NlaIII CATG 5 cut(s) 217, 406, 1445, 1502, 2311
NlaIV GGNNCC 4 cut(s) 135, 266, 717, 2412
NmuCI GTSAC 5 cut(s) 1432, 1489, 1619, 1940, 2117
NsiI ATGCAT 1 cut(s) 1987
NspV TTCGAA 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 1803
PctI GAATGC 2 cut(s) 35, 1980
PdmI GAANNNNTTC 4 cut(s) 35, 828, 1161, 2415
PfeI GAWTC 9 cut(s) 314, 698, 818, 824, 1130, 1357, 1854, 2074, 2452
PflFI GACNNNGTC 1 cut(s) 1487
PflMI CCANNNNNTGG 3 cut(s) 172, 905, 1602
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 4 cut(s) 382, 1181, 2066, 2337
PleI GAGTC 2 cut(s) 218, 441
PpsI GAGTC 2 cut(s) 218, 441
PshBI ATTAAT 2 cut(s) 1811, 2091
Psp124BI GAGCTC 2 cut(s) 234, 1098
Psp6I CCWGG 4 cut(s) 116, 290, 559, 1233
PspGI CCWGG 4 cut(s) 116, 290, 559, 1233
PspN4I GGNNCC 4 cut(s) 135, 266, 717, 2412
PspPI GGNCC 4 cut(s) 491, 796, 1231, 1680
PsrI GAACNNNNNNTAC 2 cut(s) 2403, 2435
PsuI RGATCY 3 cut(s) 887, 1238, 2353
PsyI GACNNNGTC 1 cut(s) 1487
RsaI GTAC 7 cut(s) 281, 287, 442, 1385, 1761, 1785, 2160
RsaNI GTAC 7 cut(s) 280, 286, 441, 1384, 1760, 1784, 2159
RseI CAYNNNNRTG 1 cut(s) 1283
SacI GAGCTC 2 cut(s) 234, 1098
SacII CCGCGG 1 cut(s) 384
SatI GCNGC 4 cut(s) 381, 1180, 2065, 2336
Sau3AI GATC 8 cut(s) 69, 141, 372, 529, 887, 1070, 1238, 2353
Sau96I GGNCC 4 cut(s) 491, 796, 1231, 1680
ScaI AGTACT 1 cut(s) 2160
SchI GAGTC 2 cut(s) 219, 441
ScrFI CCNGG 5 cut(s) 118, 292, 561, 1235, 1544
SduI GDGCHC 7 cut(s) 234, 248, 269, 552, 992, 1098, 1733
SfaNI GCATC 6 cut(s) 367, 744, 1135, 1177, 1972, 2237
SfcI CTRYAG 1 cut(s) 1089
Sfr303I CCGCGG 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 384
SinI GGWCC 3 cut(s) 491, 796, 1231
SmiMI CAYNNNNRTG 1 cut(s) 1283
SmlI CTYRAG 2 cut(s) 341, 1012
SmoI CTYRAG 2 cut(s) 341, 1012
SsiI CCGC 6 cut(s) 381, 383, 423, 524, 1752, 2057
SspI AATATT 1 cut(s) 637
SspMI CTAG 6 cut(s) 26, 435, 1049, 1142, 1460, 1538
SstI GAGCTC 2 cut(s) 234, 1098
StyD4I CCNGG 5 cut(s) 116, 290, 559, 1233, 1542
TaaI ACNGT 7 cut(s) 330, 652, 1060, 1319, 1421, 1428, 2326
TaiI ACGT 1 cut(s) 738
TaqI TCGA 9 cut(s) 39, 123, 375, 450, 539, 748, 801, 1668, 2458
TatI WGTACW 4 cut(s) 279, 440, 1759, 2158
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 9 cut(s) 314, 698, 818, 824, 1130, 1357, 1854, 2074, 2452
TscAI CASTG 6 cut(s) 51, 144, 559, 1065, 1324, 2331
TseFI GTSAC 5 cut(s) 1432, 1489, 1619, 1940, 2117
TseI GCWGC 3 cut(s) 1179, 2064, 2335
Tsp45I GTSAC 5 cut(s) 1432, 1489, 1619, 1940, 2117
TspGWI ACGGA 4 cut(s) 691, 1053, 1169, 2029
TspRI CASTG 6 cut(s) 51, 144, 559, 1065, 1324, 2331
Tth111I GACNNNGTC 1 cut(s) 1487
Van91I CCANNNNNTGG 3 cut(s) 172, 905, 1602
VpaK11BI GGWCC 3 cut(s) 491, 796, 1231
VspI ATTAAT 2 cut(s) 1811, 2091
XapI RAATTY 9 cut(s) 79, 623, 893, 901, 1816, 1993, 2020, 2048, 2140
XbaI TCTAGA 2 cut(s) 25, 1141
XcmI CCANNNNNNNNNTGG 1 cut(s) 1357
XmiI GTMKAC 1 cut(s) 1482
XmnI GAANNNNTTC 4 cut(s) 35, 828, 1161, 2415
XspI CTAG 6 cut(s) 26, 435, 1049, 1142, 1460, 1538
ZrmI AGTACT 1 cut(s) 2160
Zsp2I ATGCAT 1 cut(s) 1987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.