MD15G1277200.v1.1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000039
Physical Location & Seq
Forward (+)
24383115 .. 24386079
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1277200.v1.1.491

Sequence Viewer

Length: 2028 bp
ATGTGCCGAAACTCGAGTCGAAAACAAAAAACGCGCCTAACGTTCTCAGTTTCACAACGAACTAGATTATTTTACGTTCTCTCTGTAAATCCATTGGAATTTCTGTTGTTGTCACATCACCAACAACAGATTGCGTTGGTTTCTTTGAGGATTATCGAGACGGTGTTCTCTCGAATAGAAGAGAGTTTGAAGATGAACGATAATCAGCCTGATGAAATGGTTAAATGTTGGCCTGCGGTGCCTGAACCGCCATCGGTTACAGTGGGGTTGGATTTGCCGTTGAAGGAGTTGAAGATGAAGCTCCTTAAGGATGAAAAGGTGTCTATGCTTGTGCTGACTGCTGCTGGAGGATGCGGGAAAACCACCTTGGCAAAAATGTTTTGTCAAGATCAAGATGTCAAAGATACATTCAAGAATAACATCTTCTTTCTCAATGTCTCGAAAAAGCCCAACTTGGACCTTATTGTACACCAACTATATCAACGGATGGGGTACGAGCTGCCTGCTTTCGAAAACGAAGTCATGGCAGCTAACTGGTTGCAACAATTTCTCAAGGAATCTGGACAAAATCCTCTACTGTTTGTCCTGGATGATGTTTGGTCAGGATCAGAGTCCCTTCTTGAGAAGTTTGACGAATTCAAGTTTTCAAATTACAAGATTTTGGTCACATCAAGATTTGCATTTCCAAGATTCGGTTCTCCTTATCATTTGGCACCATTGAATGATGAAGATGCAATGGCTCTTTTTCACTATTCGGCATCCTTGAAGGATAAGAGCTCTTCTTACGAAGATCTTTCGAGAAAGATTATCAAGCGCTGTAAGGGATGCCCACTTGCCATTGAAATTGCACTTGGCTCCAAAAGCTTAATGCCCGAAAAGGCTATCATTTCTTTCGATCTAGGTTCTTTTAGGAGGAAAAAAATTGATATGTGGGCGGAGTTGTATGGTCTAGATGAAGAAATTCTGACCATTGCCAACCTTCATGAGCTCACCACCCGAAGTTTAGCTAATCTTGTTGTCACAAGACATGAGGGGGAGACAGATGGCTATTACGCTGAACACTTTGTCACCCAGCACGACATGCTTAGAGAGTTGGCGATCCATCAGGCGAGTCAAGACCCAATAGAACATAGGAAACGACTATTTTTAAACATCTGTGGGAACAGACTTCCTAAGTGGTTGACAGAACAAAAGTATAAAGCGATCAAGGCTCGACTATTATCTATCTCAACAGATGGAGCCTTCTCAGCAAAATGGCCAAACATGCAAGTACCCGAAGCAGAGGTTCTAGTTCTGAATTTTGAAACGAAGAACTATGCCTTACCTGAGTTTGTGGAGAAAATGGATAAACTAAAGGTTCTAATACTAAATAATTACGGTTTGTTACCTGCTGAACTAGATAATTTTGAACTACTTGGTTCGCTATCAAATCTTAAGAGAATTAGATTAGAACGTATTTCAATTCCTCCCATAAGCAAGGTCCTTAAACAGTTGAAAAGCTTGCAGAAGATCTCTCTTTTCATGTGTGATATCGGCCAAGGTTTCGTCAAAATTTTAGATGCACTGCCAAATCTAGTGGAATTGAACATTGATTATTGCTATGATCTGGTGCAACTTCCTGCCAACCTTTGTGACCTTGTTCACCTTAAGAAGCTTAGCATCACCAACTGTCATAAGCTATCTGCCTTGCCTGCAGACATCGGAAAGCTAGTCAATCTTGAAGTGTTGAGGCTTAGGTCATGTGCAGATTTGTTAGAGTTGCCAGGCTCGATTAGGAACCTTAAAGTTTTGAAATTTCTCGACATATCTGATTGCTTTAGCGTAAAGGAGTTGCCAGAGGACATTGGTGCAATGTGCAAAAGCAGCATTGAAGAAAATGGATTCAAACGAAGTGCCTGTTTCAAAACTGAAAGGCTGCCTGCTTCTGTTATGGAACTTAAAGCCATTGAAGTGATATGCGACGATTTCCTTGAAAACTTTATGGGAACCCTTTTTGCCAATTCTCACAAACATGCGCAATTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

676

Amino Acids

76.95

Weight (kDa)

7.8

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 94 - 225 5.9e-13 NB-ARC domain
AAA_22 PF13401 108 - 207 4.8e-06 AAA domain
LRR_14 PF23598 436 - 565 2.8e-07 Leucine-rich repeat region
LRR_14 PF23598 542 - 618 4.8e-10 Leucine-rich repeat region
LRR_14 PF23598 566 - 618 4.1e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2016
Acc36I ACCTGC 1 cut(s) 1396
AccB1I GGYRCC 2 cut(s) 238, 712
AccII CGCG 1 cut(s) 34
AciI CCGC 4 cut(s) 236, 248, 354, 935
AclI AACGTT 1 cut(s) 41
AclWI GGATC 2 cut(s) 613, 1093
AcoI YGGCCR 2 cut(s) 1256, 1534
AcsI RAATTY 6 cut(s) 98, 635, 960, 1297, 1551, 1793
AfaI GTAC 3 cut(s) 468, 494, 1272
AfeI AGCGCT 1 cut(s) 815
AfiI CCNNNNNNNGG 1 cut(s) 692
AflII CTTAAG 3 cut(s) 305, 1433, 1646
AjnI CCWGG 2 cut(s) 585, 1762
AjuI GAANNNNNNNTTGG 6 cut(s) 350, 382, 679, 711, 834, 866
Alw21I GWGCWC 2 cut(s) 779, 990
Alw26I GTCTC 3 cut(s) 152, 442, 1031
AlwI GGATC 2 cut(s) 613, 1093
Ama87I CYCGRG 1 cut(s) 13
Aor51HI AGCGCT 1 cut(s) 815
AoxI GGCC 3 cut(s) 230, 1256, 1534
ApeKI GCWGC 5 cut(s) 341, 499, 527, 1863, 1915
ApoI RAATTY 6 cut(s) 98, 635, 960, 1297, 1551, 1793
ArsI GACNNNNNNTTYG 3 cut(s) 33, 504, 536
Asp700I GAANNNNTTC 1 cut(s) 960
AspLEI GCGC 3 cut(s) 36, 816, 2017
AspS9I GGNCC 2 cut(s) 457, 1480
AsuHPI GGTGA 5 cut(s) 110, 982, 1060, 1634, 1654
AsuII TTCGAA 1 cut(s) 510
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 2 cut(s) 457, 1480
BalI TGGCCA 1 cut(s) 1258
BanI GGYRCC 2 cut(s) 238, 712
BanII GRGCYC 2 cut(s) 779, 990
Bbv12I GWGCWC 2 cut(s) 779, 990
BbvI GCAGC 5 cut(s) 328, 486, 539, 1875, 1902
BccI CCATC 5 cut(s) 259, 481, 1037, 1110, 1229
BceAI ACGGC 1 cut(s) 262
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 2 cut(s) 587, 1764
BcoDI GTCTC 3 cut(s) 152, 442, 1031
BfaI CTAG 7 cut(s) 63, 899, 950, 1289, 1397, 1574, 1709
BfmI CTRYAG 1 cut(s) 1692
BfoI RGCGCY 1 cut(s) 817
BfrI CTTAAG 3 cut(s) 305, 1433, 1646
BfuAI ACCTGC 1 cut(s) 1396
BglII AGATCT 2 cut(s) 790, 1509
BisI GCNGC 5 cut(s) 342, 500, 528, 1864, 1916
BlpI GCTNAGC 1 cut(s) 1655
BlsI GCNGC 5 cut(s) 343, 501, 529, 1865, 1917
Bme1390I CCNGG 2 cut(s) 587, 1764
Bme18I GGWCC 2 cut(s) 457, 1480
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 457, 1480
BmiI GGNNCC 6 cut(s) 240, 714, 856, 1240, 1778, 1987
BmrFI CCNGG 2 cut(s) 587, 1764
BmsI GCATC 6 cut(s) 341, 721, 767, 815, 1549, 1668
BpmI CTGGAG 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 1733
Bpu1102I GCTNAGC 1 cut(s) 1655
Bpu14I TTCGAA 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 536, 641
BsaJI CCNNGG 2 cut(s) 366, 1537
Bsc4I CCNNNNNNNGG 1 cut(s) 692
Bse1I ACTGG 1 cut(s) 539
Bse3DI GCAATG 3 cut(s) 741, 969, 1857
BseBI CCWGG 2 cut(s) 587, 1764
BseDI CCNNGG 2 cut(s) 366, 1537
BseGI GGATG 6 cut(s) 316, 356, 492, 595, 758, 830
BseLI CCNNNNNNNGG 1 cut(s) 692
BseMI GCAATG 3 cut(s) 741, 969, 1857
BseMII CTCAG 3 cut(s) 60, 1260, 1317
BseNI ACTGG 1 cut(s) 539
BseXI GCAGC 5 cut(s) 328, 486, 539, 1875, 1902
BseYI CCCAGC 1 cut(s) 1071
BsgI GTGCAG 1 cut(s) 1764
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 3 cut(s) 232, 1258, 1536
BshNI GGYRCC 2 cut(s) 238, 712
BsiHKAI GWGCWC 2 cut(s) 779, 990
BsiHKCI CYCGRG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 598
BslI CCNNNNNNNGG 1 cut(s) 692
BsmAI GTCTC 3 cut(s) 152, 442, 1031
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 598
BsnI GGCC 3 cut(s) 232, 1258, 1536
BsoBI CYCGRG 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 510
Bsp1286I GDGCHC 2 cut(s) 779, 990
Bsp1407I TGTACA 1 cut(s) 466
Bsp143I GATC 8 cut(s) 388, 605, 790, 895, 1098, 1203, 1509, 1603
Bsp1720I GCTNAGC 1 cut(s) 1655
BspACI CCGC 4 cut(s) 236, 248, 354, 935
BspANI GGCC 3 cut(s) 232, 1258, 1536
BspCNI CTCAG 3 cut(s) 59, 1259, 1318
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 6 cut(s) 240, 714, 856, 1240, 1778, 1987
BspMAI CTGCAG 1 cut(s) 1696
BspMI ACCTGC 1 cut(s) 1396
BspPI GGATC 2 cut(s) 613, 1093
BspQI GCTCTTC 1 cut(s) 784
BspT104I TTCGAA 1 cut(s) 510
BspT107I GGYRCC 2 cut(s) 238, 712
BspTI CTTAAG 3 cut(s) 305, 1433, 1646
BsrDI GCAATG 3 cut(s) 741, 969, 1857
BsrGI TGTACA 1 cut(s) 466
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 2 cut(s) 366, 1537
BssMI GATC 8 cut(s) 388, 605, 790, 895, 1098, 1203, 1509, 1603
BssT1I CCWWGG 2 cut(s) 366, 1537
Bst2UI CCWGG 2 cut(s) 587, 1764
Bst4CI ACNGT 6 cut(s) 163, 262, 579, 1379, 1491, 1670
Bst6I CTCTTC 2 cut(s) 174, 784
BstAFI CTTAAG 3 cut(s) 305, 1433, 1646
BstAPI GCANNNNNTGC 1 cut(s) 1081
BstAUI TGTACA 1 cut(s) 466
BstBI TTCGAA 1 cut(s) 510
BstC8I GCNNGC 5 cut(s) 234, 504, 1502, 1692, 1920
BstDEI CTNAG 7 cut(s) 46, 1085, 1173, 1246, 1326, 1655, 1733
BstF5I GGATG 6 cut(s) 316, 356, 492, 595, 758, 830
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 817
BstHHI GCGC 3 cut(s) 36, 816, 2017
BstKTI GATC 8 cut(s) 391, 608, 793, 898, 1101, 1206, 1512, 1606
BstMAI GTCTC 3 cut(s) 152, 442, 1031
BstMBI GATC 8 cut(s) 388, 605, 790, 895, 1098, 1203, 1509, 1603
BstMWI GCNNNNNNNGC 9 cut(s) 238, 247, 861, 1081, 1208, 1247, 1264, 1691, 1863
BstNI CCWGG 2 cut(s) 587, 1764
BstNSI RCATGY 3 cut(s) 1084, 1267, 2015
BstSCI CCNGG 2 cut(s) 585, 1762
BstSFI CTRYAG 1 cut(s) 1692
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 5 cut(s) 328, 486, 539, 1875, 1902
BstX2I RGATCY 2 cut(s) 790, 1509
BstYI RGATCY 2 cut(s) 790, 1509
BsuRI GGCC 3 cut(s) 232, 1258, 1536
BtsCI GGATG 6 cut(s) 316, 356, 492, 595, 758, 830
BtsI GCAGTG 1 cut(s) 1562
BtsIMutI CAGTG 2 cut(s) 267, 1562
BveI ACCTGC 1 cut(s) 1396
Cac8I GCNNGC 5 cut(s) 234, 504, 1502, 1692, 1920
CciI TCATGA 1 cut(s) 982
CfoI GCGC 3 cut(s) 36, 816, 2017
Cfr13I GGNCC 2 cut(s) 457, 1480
Csp6I GTAC 3 cut(s) 467, 493, 1271
CspCI CAANNNNNGTGG 2 cut(s) 1557, 1592
CviAII CATG 8 cut(s) 523, 983, 1028, 1081, 1264, 1522, 1740, 2012
CviQI GTAC 3 cut(s) 467, 493, 1271
DdeI CTNAG 7 cut(s) 46, 1085, 1173, 1246, 1326, 1655, 1733
DpnI GATC 8 cut(s) 390, 607, 792, 897, 1100, 1205, 1511, 1605
DpnII GATC 8 cut(s) 388, 605, 790, 895, 1098, 1203, 1509, 1603
DraI TTTAAA 1 cut(s) 1149
EaeI YGGCCR 2 cut(s) 1256, 1534
Eam1104I CTCTTC 2 cut(s) 174, 784
EarI CTCTTC 2 cut(s) 174, 784
EciI GGCGGA 1 cut(s) 950
Ecl136II GAGCTC 2 cut(s) 777, 988
Eco130I CCWWGG 2 cut(s) 366, 1537
Eco24I GRGCYC 2 cut(s) 779, 990
Eco32I GATATC 1 cut(s) 1531
Eco47I GGWCC 2 cut(s) 457, 1480
Eco47III AGCGCT 1 cut(s) 815
Eco53kI GAGCTC 2 cut(s) 777, 988
Eco88I CYCGRG 1 cut(s) 13
EcoICRI GAGCTC 2 cut(s) 777, 988
EcoO109I RGGNCCY 1 cut(s) 1480
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 585, 1762
EcoRV GATATC 1 cut(s) 1531
EcoT14I CCWWGG 2 cut(s) 366, 1537
EcoT38I GRGCYC 2 cut(s) 779, 990
ErhI CCWWGG 2 cut(s) 366, 1537
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 8 cut(s) 526, 986, 1031, 1084, 1267, 1525, 1743, 2015
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 598
FatI CATG 8 cut(s) 522, 982, 1027, 1080, 1263, 1521, 1739, 2011
FauI CCCGC 1 cut(s) 347
Fnu4HI GCNGC 5 cut(s) 342, 500, 528, 1864, 1916
FokI GGATG 6 cut(s) 323, 363, 499, 602, 745, 837
FriOI GRGCYC 2 cut(s) 779, 990
Fsp4HI GCNGC 5 cut(s) 342, 500, 528, 1864, 1916
FspBI CTAG 7 cut(s) 63, 899, 950, 1289, 1397, 1574, 1709
FspI TGCGCA 1 cut(s) 2016
GlaI GCGC 3 cut(s) 35, 815, 2016
GluI GCNGC 5 cut(s) 342, 500, 528, 1864, 1916
GsaI CCCAGC 1 cut(s) 1075
GsuI CTGGAG 1 cut(s) 366
HaeII RGCGCY 1 cut(s) 817
HaeIII GGCC 3 cut(s) 232, 1258, 1536
HhaI GCGC 3 cut(s) 36, 816, 2017
Hin1II CATG 8 cut(s) 526, 986, 1031, 1084, 1267, 1525, 1743, 2015
Hin6I GCGC 3 cut(s) 34, 814, 2015
HinP1I GCGC 3 cut(s) 34, 814, 2015
HincII GTYRAC 1 cut(s) 1182
HindII GTYRAC 1 cut(s) 1182
HindIII AAGCTT 3 cut(s) 862, 1498, 1652
HinfI GANTC 6 cut(s) 16, 557, 611, 690, 1111, 1881
HphI GGTGA 5 cut(s) 110, 982, 1060, 1634, 1654
Hpy166II GTNNAC 3 cut(s) 469, 1182, 1642
Hpy188I TCNGA 5 cut(s) 610, 966, 1296, 1703, 1810
Hpy8I GTNNAC 3 cut(s) 469, 1182, 1642
Hpy99I CGWCG 1 cut(s) 1964
HpyAV CCTTC 5 cut(s) 277, 626, 760, 989, 1252
HpyCH4III ACNGT 6 cut(s) 163, 262, 579, 1379, 1491, 1670
HpyCH4IV ACGT 3 cut(s) 41, 75, 1453
HpyF10VI GCNNNNNNNGC 9 cut(s) 238, 247, 861, 1081, 1208, 1247, 1264, 1691, 1863
HpyF3I CTNAG 7 cut(s) 46, 1085, 1173, 1246, 1326, 1655, 1733
HpySE526I ACGT 3 cut(s) 41, 75, 1453
Hsp92II CATG 8 cut(s) 526, 986, 1031, 1084, 1267, 1525, 1743, 2015
HspAI GCGC 3 cut(s) 34, 814, 2015
Kzo9I GATC 8 cut(s) 388, 605, 790, 895, 1098, 1203, 1509, 1603
LguI GCTCTTC 1 cut(s) 784
LmnI GCTCC 3 cut(s) 306, 860, 1238
Lsp1109I GCAGC 5 cut(s) 328, 486, 539, 1875, 1902
LweI GCATC 6 cut(s) 341, 721, 767, 815, 1549, 1668
MaeI CTAG 7 cut(s) 63, 899, 950, 1289, 1397, 1574, 1709
MaeII ACGT 3 cut(s) 41, 75, 1453
MaeIII GTNAC 7 cut(s) 111, 256, 664, 1018, 1066, 1383, 1631
MalI GATC 8 cut(s) 390, 607, 792, 897, 1100, 1205, 1511, 1605
MboI GATC 8 cut(s) 388, 605, 790, 895, 1098, 1203, 1509, 1603
MflI RGATCY 2 cut(s) 790, 1509
MhlI GDGCHC 2 cut(s) 779, 990
MlsI TGGCCA 1 cut(s) 1258
MluNI TGGCCA 1 cut(s) 1258
MlyI GAGTC 3 cut(s) 25, 620, 1120
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 9 cut(s) 141, 341, 582, 906, 1024, 1276, 1476, 1722, 1831
Mox20I TGGCCA 1 cut(s) 1258
MroXI GAANNNNTTC 1 cut(s) 960
MscI TGGCCA 1 cut(s) 1258
MslI CAYNNNNRTG 2 cut(s) 1949, 2010
Msp20I TGGCCA 1 cut(s) 1258
MspCI CTTAAG 3 cut(s) 305, 1433, 1646
MspR9I CCNGG 2 cut(s) 587, 1764
MvaI CCWGG 2 cut(s) 587, 1764
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 9 cut(s) 238, 247, 861, 1081, 1208, 1247, 1264, 1691, 1863
NdeII GATC 8 cut(s) 388, 605, 790, 895, 1098, 1203, 1509, 1603
NlaIII CATG 8 cut(s) 526, 986, 1031, 1084, 1267, 1525, 1743, 2015
NlaIV GGNNCC 6 cut(s) 240, 714, 856, 1240, 1778, 1987
NmuCI GTSAC 5 cut(s) 111, 664, 1018, 1066, 1631
NsbI TGCGCA 1 cut(s) 2016
NspI RCATGY 3 cut(s) 1084, 1267, 2015
NspV TTCGAA 1 cut(s) 510
PaeR7I CTCGAG 1 cut(s) 13
PagI TCATGA 1 cut(s) 982
PciSI GCTCTTC 1 cut(s) 784
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 3 cut(s) 557, 690, 1881
PfoI TCCNGGA 1 cut(s) 585
PkrI GCNGC 5 cut(s) 343, 501, 529, 1865, 1917
PleI GAGTC 3 cut(s) 24, 619, 1119
PpsI GAGTC 3 cut(s) 24, 619, 1119
PpuMI RGGWCCY 1 cut(s) 1480
Psp124BI GAGCTC 2 cut(s) 779, 990
Psp1406I AACGTT 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 1480
Psp6I CCWGG 2 cut(s) 585, 1762
PspFI CCCAGC 1 cut(s) 1071
PspGI CCWGG 2 cut(s) 585, 1762
PspN4I GGNNCC 6 cut(s) 240, 714, 856, 1240, 1778, 1987
PspPI GGNCC 2 cut(s) 457, 1480
PspPPI RGGWCCY 1 cut(s) 1480
PspXI VCTCGAGB 1 cut(s) 13
PstI CTGCAG 1 cut(s) 1696
PsuI RGATCY 2 cut(s) 790, 1509
RsaI GTAC 3 cut(s) 468, 494, 1272
RsaNI GTAC 3 cut(s) 467, 493, 1271
RseI CAYNNNNRTG 2 cut(s) 1949, 2010
SacI GAGCTC 2 cut(s) 779, 990
SapI GCTCTTC 1 cut(s) 784
SatI GCNGC 5 cut(s) 342, 500, 528, 1864, 1916
Sau3AI GATC 8 cut(s) 388, 605, 790, 895, 1098, 1203, 1509, 1603
Sau96I GGNCC 2 cut(s) 457, 1480
SchI GAGTC 3 cut(s) 25, 620, 1120
ScrFI CCNGG 2 cut(s) 587, 1764
SduI GDGCHC 2 cut(s) 779, 990
SfaNI GCATC 6 cut(s) 341, 721, 767, 815, 1549, 1668
SfcI CTRYAG 1 cut(s) 1692
Sfr274I CTCGAG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 510
SinI GGWCC 2 cut(s) 457, 1480
SlaI CTCGAG 1 cut(s) 13
SmiMI CAYNNNNRTG 2 cut(s) 1949, 2010
SmlI CTYRAG 6 cut(s) 13, 305, 551, 620, 1433, 1646
SmoI CTYRAG 6 cut(s) 13, 305, 551, 620, 1433, 1646
SsiI CCGC 4 cut(s) 236, 248, 354, 935
SspMI CTAG 7 cut(s) 63, 899, 950, 1289, 1397, 1574, 1709
SstI GAGCTC 2 cut(s) 779, 990
StyD4I CCNGG 2 cut(s) 585, 1762
StyI CCWWGG 2 cut(s) 366, 1537
TaaI ACNGT 6 cut(s) 163, 262, 579, 1379, 1491, 1670
TaiI ACGT 3 cut(s) 44, 78, 1456
TatI WGTACW 1 cut(s) 466
TfiI GAWTC 3 cut(s) 557, 690, 1881
TscAI CASTG 2 cut(s) 267, 1569
TseFI GTSAC 5 cut(s) 111, 664, 1018, 1066, 1631
TseI GCWGC 5 cut(s) 341, 499, 527, 1863, 1915
Tsp45I GTSAC 5 cut(s) 111, 664, 1018, 1066, 1631
TspDTI ATGAA 8 cut(s) 209, 228, 311, 327, 741, 969, 971, 1510
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 2 cut(s) 267, 1569
Vha464I CTTAAG 3 cut(s) 305, 1433, 1646
VpaK11BI GGWCC 2 cut(s) 457, 1480
XapI RAATTY 6 cut(s) 98, 635, 960, 1297, 1551, 1793
XbaI TCTAGA 1 cut(s) 949
XceI RCATGY 3 cut(s) 1084, 1267, 2015
XhoI CTCGAG 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 7 cut(s) 63, 899, 950, 1289, 1397, 1574, 1709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.