Rorug01G0060500

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
9959260 .. 9962311
3052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0060500.1

Sequence Viewer

Length: 303 bp
ATGGCTGCCTCACCGCCTCACTCCGATGCTCAGCTGACTCTCCTCCCTCCTCCTCCTCCTCCACCGGAATCCGACTCTCAGATCTCTTCCCTCCTTTACGAGATCTCGCAACAAGTTCAAGCAGAAATGGAGGACATGCTCAAGTCGATCAGGGAAATTGATGAAAACTCTGCTCAGATAAATGAAGAGATTGACAAGTGCAAGGACTCTGCGCTCGAGAAGAAGAGAGGCTTAGACGAAACCAAAGAACAAGTCGAGAAAGCTGCTTATGCCGTTTTGCAGATGCTCAACAACAGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.13

Weight (kDa)

4.46

Isoelectric Point (pI)

63.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 14
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 2 cut(s) 34, 263
AluI AGCT 2 cut(s) 34, 263
Ama87I CYCGRG 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 5, 263
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 3
AvaI CYCGRG 1 cut(s) 215
BbvI GCAGC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BglII AGATCT 2 cut(s) 81, 102
BisI GCNGC 2 cut(s) 6, 264
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 2 cut(s) 7, 265
BmeT110I CYCGRG 1 cut(s) 215
BmsI GCATC 2 cut(s) 16, 273
Bpu1102I GCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 64
BseMII CTCAG 3 cut(s) 44, 92, 188
BseRI GAGGAG 5 cut(s) 32, 39, 42, 45, 48
BseXI GCAGC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 215
Bsp143I GATC 3 cut(s) 81, 102, 147
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 3 cut(s) 43, 91, 187
BssMI GATC 3 cut(s) 81, 102, 147
Bst6I CTCTTC 3 cut(s) 91, 180, 218
BstDEI CTNAG 4 cut(s) 30, 78, 174, 232
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 3 cut(s) 84, 105, 150
BstMBI GATC 3 cut(s) 81, 102, 147
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 2 cut(s) 81, 102
BstYI RGATCY 2 cut(s) 81, 102
CfoI GCGC 1 cut(s) 214
CviAII CATG 1 cut(s) 136
CviJI RGCY 4 cut(s) 5, 34, 231, 263
CviKI_1 RGCY 4 cut(s) 5, 34, 231, 263
DdeI CTNAG 4 cut(s) 30, 78, 174, 232
DpnI GATC 3 cut(s) 83, 104, 149
DpnII GATC 3 cut(s) 81, 102, 147
Eam1104I CTCTTC 3 cut(s) 91, 180, 218
EarI CTCTTC 3 cut(s) 91, 180, 218
Eco88I CYCGRG 1 cut(s) 215
FaeI CATG 1 cut(s) 139
FaiI YATR 3 cut(s) 137, 270, 301
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 6, 264
Fsp4HI GCNGC 2 cut(s) 6, 264
GlaI GCGC 1 cut(s) 213
GluI GCNGC 2 cut(s) 6, 264
HapII CCGG 1 cut(s) 65
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 4 cut(s) 37, 68, 74, 206
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 3
Hpy188I TCNGA 4 cut(s) 25, 73, 81, 177
Hpy188III TCNNGA 2 cut(s) 217, 256
HpyCH4V TGCA 2 cut(s) 201, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 4 cut(s) 30, 78, 174, 232
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 3 cut(s) 81, 102, 147
LpnPI CCDG 2 cut(s) 78, 136
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 2 cut(s) 16, 273
MalI GATC 3 cut(s) 83, 104, 149
MboI GATC 3 cut(s) 81, 102, 147
MboII GAAGA 4 cut(s) 78, 197, 232, 235
MflI RGATCY 2 cut(s) 81, 102
MluCI AATT 1 cut(s) 156
MlyI GAGTC 3 cut(s) 31, 68, 200
MmeI TCCRAC 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 3 cut(s) 81, 102, 147
NlaIII CATG 1 cut(s) 139
NspI RCATGY 1 cut(s) 139
PaeR7I CTCGAG 1 cut(s) 215
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 7, 265
PleI GAGTC 3 cut(s) 31, 68, 200
PpsI GAGTC 3 cut(s) 31, 68, 200
PsuI RGATCY 2 cut(s) 81, 102
PvuII CAGCTG 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 2 cut(s) 6, 264
Sau3AI GATC 3 cut(s) 81, 102, 147
SchI GAGTC 3 cut(s) 31, 68, 200
SetI ASST 2 cut(s) 36, 265
SfaNI GCATC 2 cut(s) 16, 273
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 2 cut(s) 140, 215
SmoI CTYRAG 2 cut(s) 140, 215
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 14
TaqI TCGA 3 cut(s) 146, 216, 255
TasI AATT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 68
TseI GCWGC 2 cut(s) 5, 263
TspDTI ATGAA 2 cut(s) 177, 198
XceI RCATGY 1 cut(s) 139
XhoI CTCGAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.