MD15G1278400.v1.1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000039
Physical Location & Seq
Forward (+)
24610634 .. 24613637
3004 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1278400.v1.1.491

Sequence Viewer

Length: 2421 bp
ATGGGAGTCCTTGCGTCAGCTGTAGTAGCTATTGTAAAAATTCCATTTGAATGGCTGTTTGGTGCCGCCATAAGATTCTACAAGATGGCTAAGAAGTTTCCAACTCTCCGCAGAGATCTCACTTCAAATATAAACTACTTGGAACAACGGATCCCACTGATAAGCCGCACCAGAATCGTTTGGGTTTCTGAAAATTTAACAAGAACAATGGAGGATGGCAAGGAGCTGGCCAGAATGTGCGACGAGGGGAATCTGAACTTCTTTGAAAAGGCTAAATATGCTAAAAAAATTGTTAAATGGGACGAATCTCGTCAAAGAATCTTGAAGTTAGTGCAAACTGATGCAAATCTTGTGGCTCAAAATCAAAACCAAGACCTTGTTACAACTTGGTGTGCAGTTCCTGACCTTCCAAGCAATACACTAAAACTGGATGCACCTTTGGCGGGGATGAAGATGAAACTCCTTAGAGATGACGCGCGGTCAATGCTTGTGCTCACTGCTCCGCCAGGATGTGGGAAAACCACTTTGGCAAATATGTTCTGTCATGATCCACAAGTCAAAGATAAATTCAAGGACAATATCTTCTTTGCCACGGTTTCCAATAAGCCCAGCCACCTTGTCCAAGAATTGTGTCAACATGCCGGATTCAGGGTACCTGCTTTAGAAAATGAAGCAATTGCATTTAGCTGGCTGCCGCGATTTTTGAGGGAAGCAGGGCAAAATCCCTTACTGTTAATCTTGGATGATGTTCCGTCTACATCAGAATCCCTTCTTGACAAGTTTGATGAAATCAAAATTACAGATTACAAGATTTTGGTGACATCAAGATACCATTTTCCGAAATTCGGGCCTCCATATAATTTACAAGCGTTGACAGATAAAGATGCACTGACTCTTTTTCGTCGTTCAGCATTCCTGCCAAATACGAGCTGTAACATACCAGATGATCTTCAGATTCAGATAGTAAACTGCTGTAAGAGATTTCCGCTTGCCATTACAACCGTAGGGACGTCACTTTGCAATCAGCCTATACAGGAATGGAGAACCAAACTCAAAAAATTATCTAAAGGTTCTTCTATTCTTGATTCAGAGAATGATTCAGAGAAAAAATTGCTTGCACTCCTCGAAAGTTGCTTAGATGACTTGAATAGAGAAATGGCTCCTGTCAAGGATTGTTTCATAGACCTTGCTTTATTTCCCCAAGACCAAAGAATTCCCGTTGCTTTCCTTCTTGATATGTGGGCAGAGTTATATGAGGGATCAAATGATGACGATTCAATAGTGAACCTATACCACCTCACCTTCCGCAATTTGGCCAGTCTTGTAGTCACAAGGACTAAGGATTTGGATGGATACTATGGTGAACATTTTGTTGTCCAACATGATGTGCTTAAATTGCTATCAATCCGTGCGAGTCATGATGAAGACCCAACAGGACATAGATTGATTGTAGACATAAATGGAGATGAGCTTCCACCATGGTGGACAGAGAAGAAAACATGGAAGGCTCGCTTAGTATCTGTCTTAACACCATGGTGGACAGAGAAGAAGCAGAAAACAAAGAAGGCTCGCTTAGTATCTGTCATAACTGGTGAATCTTCTTCAACAGAGTGGCACAACATGGATCTACCAAAAGGCGAGGTTCTAGTTTTGAATTTTCAAGCAAAGAACTATGCCTTACCCAAGTTCATGAAGAAAATGTGCAAGTTGAAGGTTCTAATAGTCACAAATGATGGCTTCTCACCTGCTGAGCTAAGTGACTTTGAACTGCTGTGTTCTTTGTCAAATCTAAAGAGACTAAGATTAGAGCATATTTCAATTCCTTTGATACGCGAGAACATCATTCCATCGAAGAGTCTAAAGAAGATATCTTTATTCATGTGTAACGTCAGTCAAGCATTTGGAAACTCTTCCATCCAAATTTTTGAGACATTCCCATACCTAGAGGAGTTGCACATCGACTATTGTAACGATTTGGTGAAATTGCCTGCCAAGCTATGCGATCTTATCGGCCTAAAAGTTCTCAGCATCACCAACTCTCATAAGCTATCTGTCTTGCCTGAAGACATCGGAAAGCTGGAGAATTTAGAAGTGTTGAGGCTAAGGTCCTGCACAGGCTTGGAAAAGCTTCCAGGCTCGATTGAGAAACTCAATAACTTGTACTTTCTTGACATATCTAATTGTTCCAGCATTAAGACGTTGCCCGAAGGCATTGATAAGATGAATGGTTTAAGAAAAATCAATATGGCACAATGTTCAAGATTGGATGAGCTGCCTGAGTCAGTGTATGATCTTGGTCCGCAGTTAGAGAAAGTGATATGTGACGAGGACGCAAGAATTTTTTGGGAACCTGTCTTATCAAATCCCAACAAAATAACGGTGGCATTCAACCTGAATTGGCTCCACAGACTTCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

807

Amino Acids

91.86

Weight (kDa)

7.73

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 150 - 304 3.1e-06 NB-ARC domain
AAA_22 PF13401 159 - 253 2.5e-06 AAA domain
LRR_14 PF23598 639 - 764 1.2e-15 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1753
AatII GACGTC 1 cut(s) 1013
Acc36I ACCTGC 2 cut(s) 664, 1753
Acc65I GGTACC 1 cut(s) 652
AccB1I GGYRCC 2 cut(s) 62, 652
AccB7I CCANNNNNTGG 1 cut(s) 512
AccI GTMKAC 2 cut(s) 755, 1452
AccII CGCG 4 cut(s) 476, 478, 697, 1833
AclWI GGATC 5 cut(s) 145, 158, 542, 1267, 1632
AcoI YGGCCR 2 cut(s) 228, 1314
AcsI RAATTY 9 cut(s) 39, 193, 566, 842, 1212, 1654, 1920, 2083, 2337
AcuI CTGAAG 3 cut(s) 935, 2082, 2396
AcyI GRCGYC 1 cut(s) 1010
AfaI GTAC 2 cut(s) 654, 2162
AfiI CCNNNNNNNGG 5 cut(s) 443, 512, 648, 845, 1312
AhdI GACNNNNNGTC 1 cut(s) 478
AjnI CCWGG 2 cut(s) 505, 2131
AjuI GAANNNNNNNTTGG 4 cut(s) 42, 74, 509, 541
AleI CACNNNNGTG 2 cut(s) 1480, 1534
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 2 cut(s) 1789, 1922
AlwI GGATC 5 cut(s) 145, 158, 542, 1267, 1632
AlwNI CAGNNNCTG 1 cut(s) 401
AoxI GGCC 4 cut(s) 228, 848, 1314, 2011
ApeKI GCWGC 2 cut(s) 691, 2272
ApoI RAATTY 9 cut(s) 39, 193, 566, 842, 1212, 1654, 1920, 2083, 2337
ArsI GACNNNNNNTTYG 3 cut(s) 1327, 1359, 2400
Asp700I GAANNNNTTC 3 cut(s) 768, 1909, 2127
Asp718I GGTACC 1 cut(s) 652
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 3 cut(s) 848, 2106, 2297
AsuHPI GGTGA 7 cut(s) 829, 1291, 1373, 1604, 1734, 1990, 2023
AvaII GGWCC 2 cut(s) 2106, 2297
BaeI ACNNNNGTAYC 2 cut(s) 1345, 1378
BalI TGGCCA 2 cut(s) 230, 1316
BamHI GGATCC 1 cut(s) 150
BanI GGYRCC 2 cut(s) 62, 652
BbsI GAAGAC 2 cut(s) 1431, 2070
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 2 cut(s) 678, 2259
BccI CCATC 6 cut(s) 79, 209, 1343, 1727, 1855, 1922
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 2 cut(s) 507, 2133
BciVI GTATCC 1 cut(s) 1346
BcoDI GTCTC 2 cut(s) 1789, 1922
BfaI CTAG 2 cut(s) 1646, 1943
BfmI CTRYAG 1 cut(s) 21
BfuAI ACCTGC 2 cut(s) 664, 1753
BfuI GTATCC 1 cut(s) 1346
BglII AGATCT 1 cut(s) 115
BisI GCNGC 5 cut(s) 66, 166, 692, 695, 2273
BlpI GCTNAGC 1 cut(s) 1749
BlsI GCNGC 5 cut(s) 67, 167, 693, 696, 2274
Bme1390I CCNGG 2 cut(s) 507, 2133
Bme18I GGWCC 2 cut(s) 2106, 2297
BmeRI GACNNNNNGTC 1 cut(s) 478
BmgT120I GGNCC 3 cut(s) 848, 2106, 2297
BmiI GGNNCC 6 cut(s) 64, 152, 654, 1161, 2349, 2402
BmrFI CCNGG 2 cut(s) 507, 2133
BmsI GCATC 4 cut(s) 331, 421, 874, 2037
BpiI GAAGAC 2 cut(s) 1431, 2070
BpmI CTGGAG 1 cut(s) 2099
Bpu10I CCTNAGC 1 cut(s) 2102
Bpu1102I GCTNAGC 1 cut(s) 1749
BsaBI GATNNNNATC 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 1010
BsaJI CCNNGG 3 cut(s) 591, 1478, 1532
Bsc4I CCNNNNNNNGG 5 cut(s) 443, 512, 648, 845, 1312
Bse1I ACTGG 3 cut(s) 432, 1317, 1594
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 2 cut(s) 507, 2133
BseDI CCNNGG 3 cut(s) 591, 1478, 1532
BseGI GGATG 8 cut(s) 220, 436, 453, 515, 748, 1354, 1914, 2272
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 5 cut(s) 443, 512, 648, 845, 1312
BseMII CTCAG 3 cut(s) 1740, 2038, 2268
BseNI ACTGG 3 cut(s) 432, 1317, 1594
BseRI GAGGAG 2 cut(s) 1112, 1961
BseXI GCAGC 2 cut(s) 678, 2259
BseYI CCCAGC 1 cut(s) 608
BsgI GTGCAG 2 cut(s) 414, 2095
Bsh1236I CGCG 4 cut(s) 476, 478, 697, 1833
BshFI GGCC 4 cut(s) 230, 850, 1316, 2013
BshNI GGYRCC 2 cut(s) 62, 652
BsiHKAI GWGCWC 1 cut(s) 495
BsiSI CCGG 1 cut(s) 642
BslFI GGGAC 2 cut(s) 314, 1021
BslI CCNNNNNNNGG 5 cut(s) 443, 512, 648, 845, 1312
BsmAI GTCTC 2 cut(s) 1789, 1922
BsmFI GGGAC 2 cut(s) 314, 1021
BsmI GAATGC 2 cut(s) 911, 2384
BsnI GGCC 4 cut(s) 230, 850, 1316, 2013
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 8 cut(s) 115, 150, 547, 946, 1259, 1624, 2002, 2290
Bsp1720I GCTNAGC 1 cut(s) 1749
Bsp19I CCATGG 2 cut(s) 1478, 1532
BspANI GGCC 4 cut(s) 230, 850, 1316, 2013
BspCNI CTCAG 3 cut(s) 1741, 2037, 2269
BspFNI CGCG 4 cut(s) 476, 478, 697, 1833
BspHI TCATGA 3 cut(s) 544, 1417, 1689
BspLI GGNNCC 6 cut(s) 64, 152, 654, 1161, 2349, 2402
BspMI ACCTGC 2 cut(s) 664, 1753
BspPI GGATC 5 cut(s) 145, 158, 542, 1267, 1632
BspT107I GGYRCC 2 cut(s) 62, 652
BsrI ACTGG 3 cut(s) 432, 1317, 1594
BssECI CCNNGG 3 cut(s) 591, 1478, 1532
BssMI GATC 8 cut(s) 115, 150, 547, 946, 1259, 1624, 2002, 2290
BssNI GRCGYC 1 cut(s) 1010
BssT1I CCWWGG 2 cut(s) 1478, 1532
Bst2UI CCWGG 2 cut(s) 507, 2133
Bst4CI ACNGT 4 cut(s) 595, 732, 1003, 2380
Bst6I CTCTTC 2 cut(s) 1847, 1915
BstACI GRCGYC 1 cut(s) 1010
BstC8I GCNNGC 7 cut(s) 228, 689, 990, 1116, 1510, 1570, 1989
BstDSI CCRYGG 3 cut(s) 591, 1478, 1532
BstF5I GGATG 8 cut(s) 220, 436, 453, 515, 748, 1354, 1914, 2272
BstFNI CGCG 4 cut(s) 476, 478, 697, 1833
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 8 cut(s) 118, 153, 550, 949, 1262, 1627, 2005, 2293
BstMAI GTCTC 2 cut(s) 1789, 1922
BstMBI GATC 8 cut(s) 115, 150, 547, 946, 1259, 1624, 2002, 2290
BstMWI GCNNNNNNNGC 6 cut(s) 26, 278, 440, 484, 1396, 1993
BstNI CCWGG 2 cut(s) 507, 2133
BstNSI RCATGY 1 cut(s) 641
BstSCI CCNGG 2 cut(s) 505, 2131
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 4 cut(s) 476, 478, 697, 1833
BstV1I GCAGC 2 cut(s) 678, 2259
BstV2I GAAGAC 2 cut(s) 1431, 2070
BstX2I RGATCY 3 cut(s) 115, 150, 1624
BstXI CCANNNNNNTGG 2 cut(s) 51, 1482
BstYI RGATCY 3 cut(s) 115, 150, 1624
BsuI GTATCC 1 cut(s) 1346
BsuRI GGCC 4 cut(s) 230, 850, 1316, 2013
BtgI CCRYGG 3 cut(s) 591, 1478, 1532
BtsCI GGATG 8 cut(s) 220, 436, 453, 515, 748, 1354, 1914, 2272
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 4 cut(s) 155, 495, 887, 2289
BveI ACCTGC 2 cut(s) 664, 1753
Cac8I GCNNGC 7 cut(s) 228, 689, 990, 1116, 1510, 1570, 1989
CaiI CAGNNNCTG 1 cut(s) 401
CciI TCATGA 3 cut(s) 544, 1417, 1689
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 3 cut(s) 848, 2106, 2297
CseI GACGC 3 cut(s) 3, 482, 2339
Csp6I GTAC 2 cut(s) 653, 2161
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviQI GTAC 2 cut(s) 653, 2161
DpnI GATC 8 cut(s) 117, 152, 549, 948, 1261, 1626, 2004, 2292
DpnII GATC 8 cut(s) 115, 150, 547, 946, 1259, 1624, 2002, 2290
DriI GACNNNNNGTC 1 cut(s) 478
EaeI YGGCCR 2 cut(s) 228, 1314
Eam1104I CTCTTC 2 cut(s) 1847, 1915
Eam1105I GACNNNNNGTC 1 cut(s) 478
EarI CTCTTC 2 cut(s) 1847, 1915
EciI GGCGGA 1 cut(s) 492
Eco130I CCWWGG 2 cut(s) 1478, 1532
Eco32I GATATC 1 cut(s) 1869
Eco47I GGWCC 2 cut(s) 2106, 2297
Eco57I CTGAAG 3 cut(s) 935, 2082, 2396
EcoO109I RGGNCCY 1 cut(s) 2106
EcoRI GAATTC 1 cut(s) 1212
EcoRII CCWGG 2 cut(s) 505, 2131
EcoRV GATATC 1 cut(s) 1869
EcoT14I CCWWGG 2 cut(s) 1478, 1532
ErhI CCWWGG 2 cut(s) 1478, 1532
FalI AAGNNNNNCTT 4 cut(s) 1496, 1528, 1556, 1588
FaqI GGGAC 2 cut(s) 314, 1021
FauI CCCGC 1 cut(s) 436
FblI GTMKAC 2 cut(s) 755, 1452
Fnu4HI GCNGC 5 cut(s) 66, 166, 692, 695, 2273
FokI GGATG 8 cut(s) 227, 443, 460, 522, 755, 1361, 1901, 2279
Fsp4HI GCNGC 5 cut(s) 66, 166, 692, 695, 2273
FspBI CTAG 2 cut(s) 1646, 1943
GlaI GCGC 1 cut(s) 477
GluI GCNGC 5 cut(s) 66, 166, 692, 695, 2273
GsaI CCCAGC 1 cut(s) 612
GsuI CTGGAG 1 cut(s) 2099
HaeIII GGCC 4 cut(s) 230, 850, 1316, 2013
HapII CCGG 1 cut(s) 642
HgaI GACGC 3 cut(s) 3, 482, 2339
HhaI GCGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 1010
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HincII GTYRAC 2 cut(s) 635, 873
HindII GTYRAC 2 cut(s) 635, 873
HindIII AAGCTT 1 cut(s) 2126
HpaII CCGG 1 cut(s) 642
HphI GGTGA 7 cut(s) 829, 1291, 1373, 1604, 1734, 1990, 2023
Hpy166II GTNNAC 9 cut(s) 635, 756, 873, 967, 1285, 1364, 1453, 1485, 1539
Hpy8I GTNNAC 9 cut(s) 635, 756, 873, 967, 1285, 1364, 1453, 1485, 1539
Hpy99I CGWCG 2 cut(s) 245, 906
HpyAV CCTTC 8 cut(s) 416, 779, 1238, 1312, 1498, 1558, 1705, 2201
HpyCH4III ACNGT 4 cut(s) 595, 732, 1003, 2380
HpyCH4IV ACGT 3 cut(s) 1010, 1887, 2198
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 278, 440, 484, 1396, 1993
HpySE526I ACGT 3 cut(s) 1010, 1887, 2198
Hsp92I GRCGYC 1 cut(s) 1010
HspAI GCGC 1 cut(s) 476
KpnI GGTACC 1 cut(s) 656
Kzo9I GATC 8 cut(s) 115, 150, 547, 946, 1259, 1624, 2002, 2290
LmnI GCTCC 4 cut(s) 223, 505, 1165, 2406
Lsp1109I GCAGC 2 cut(s) 678, 2259
LweI GCATC 4 cut(s) 331, 421, 874, 2037
MaeI CTAG 2 cut(s) 1646, 1943
MaeII ACGT 3 cut(s) 1010, 1887, 2198
MalI GATC 8 cut(s) 117, 152, 549, 948, 1261, 1626, 2004, 2292
MboI GATC 8 cut(s) 115, 150, 547, 946, 1259, 1624, 2002, 2290
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 3 cut(s) 115, 150, 1624
MhlI GDGCHC 1 cut(s) 495
MlsI TGGCCA 2 cut(s) 230, 1316
MluNI TGGCCA 2 cut(s) 230, 1316
MlyI GAGTC 5 cut(s) 15, 886, 1423, 1864, 2288
MmeI TCCRAC 2 cut(s) 125, 1402
Mox20I TGGCCA 2 cut(s) 230, 1316
MroXI GAANNNNTTC 3 cut(s) 768, 1909, 2127
MscI TGGCCA 2 cut(s) 230, 1316
MseI TTAA 7 cut(s) 197, 294, 734, 1392, 1526, 2193, 2231
MslI CAYNNNNRTG 3 cut(s) 49, 1480, 1534
Msp20I TGGCCA 2 cut(s) 230, 1316
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 642
MspR9I CCNGG 2 cut(s) 507, 2133
MunI CAATTG 1 cut(s) 675
Mva1269I GAATGC 2 cut(s) 911, 2384
MvaI CCWGG 2 cut(s) 507, 2133
MvnI CGCG 4 cut(s) 476, 478, 697, 1833
MwoI GCNNNNNNNGC 6 cut(s) 26, 278, 440, 484, 1396, 1993
NcoI CCATGG 2 cut(s) 1478, 1532
NdeII GATC 8 cut(s) 115, 150, 547, 946, 1259, 1624, 2002, 2290
NlaIV GGNNCC 6 cut(s) 64, 152, 654, 1161, 2349, 2402
NmuCI GTSAC 6 cut(s) 817, 1011, 1327, 1723, 1757, 2321
NspI RCATGY 1 cut(s) 641
OliI CACNNNNGTG 2 cut(s) 1480, 1534
PagI TCATGA 3 cut(s) 544, 1417, 1689
PaqCI CACCTGC 1 cut(s) 1753
PctI GAATGC 2 cut(s) 911, 2384
PdmI GAANNNNTTC 3 cut(s) 768, 1909, 2127
PflMI CCANNNNNTGG 1 cut(s) 512
PkrI GCNGC 5 cut(s) 67, 167, 693, 696, 2274
PleI GAGTC 5 cut(s) 14, 886, 1422, 1863, 2287
PpsI GAGTC 5 cut(s) 14, 886, 1422, 1863, 2287
PpuMI RGGWCCY 1 cut(s) 2106
Psp5II RGGWCCY 1 cut(s) 2106
Psp6I CCWGG 2 cut(s) 505, 2131
PspFI CCCAGC 1 cut(s) 608
PspGI CCWGG 2 cut(s) 505, 2131
PspN4I GGNNCC 6 cut(s) 64, 152, 654, 1161, 2349, 2402
PspPI GGNCC 3 cut(s) 848, 2106, 2297
PspPPI RGGWCCY 1 cut(s) 2106
PstNI CAGNNNCTG 1 cut(s) 401
PsuI RGATCY 3 cut(s) 115, 150, 1624
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 654, 2162
RsaNI GTAC 2 cut(s) 653, 2161
RseI CAYNNNNRTG 3 cut(s) 49, 1480, 1534
SaqAI TTAA 7 cut(s) 197, 294, 734, 1392, 1526, 2193, 2231
SatI GCNGC 5 cut(s) 66, 166, 692, 695, 2273
Sau3AI GATC 8 cut(s) 115, 150, 547, 946, 1259, 1624, 2002, 2290
Sau96I GGNCC 3 cut(s) 848, 2106, 2297
SchI GAGTC 5 cut(s) 15, 886, 1423, 1864, 2288
ScrFI CCNGG 2 cut(s) 507, 2133
SduI GDGCHC 1 cut(s) 495
SfaNI GCATC 4 cut(s) 331, 421, 874, 2037
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 2 cut(s) 2106, 2297
SmiMI CAYNNNNRTG 3 cut(s) 49, 1480, 1534
SspMI CTAG 2 cut(s) 1646, 1943
StyD4I CCNGG 2 cut(s) 505, 2131
StyI CCWWGG 2 cut(s) 1478, 1532
TaaI ACNGT 4 cut(s) 595, 732, 1003, 2380
TaiI ACGT 3 cut(s) 1013, 1890, 2201
TaqI TCGA 4 cut(s) 1125, 1850, 1959, 2138
TatI WGTACW 1 cut(s) 2160
TauI GCSGC 3 cut(s) 68, 168, 697
Tru1I TTAA 7 cut(s) 197, 294, 734, 1392, 1526, 2193, 2231
Tru9I TTAA 7 cut(s) 197, 294, 734, 1392, 1526, 2193, 2231
TscAI CASTG 4 cut(s) 162, 502, 894, 2289
TseFI GTSAC 6 cut(s) 817, 1011, 1327, 1723, 1757, 2321
TseI GCWGC 2 cut(s) 691, 2272
Tsp45I GTSAC 6 cut(s) 817, 1011, 1327, 1723, 1757, 2321
TspGWI ACGGA 3 cut(s) 163, 741, 1397
TspRI CASTG 4 cut(s) 162, 502, 894, 2289
Van91I CCANNNNNTGG 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 2106, 2297
XapI RAATTY 9 cut(s) 39, 193, 566, 842, 1212, 1654, 1920, 2083, 2337
XceI RCATGY 1 cut(s) 641
XmiI GTMKAC 2 cut(s) 755, 1452
XmnI GAANNNNTTC 3 cut(s) 768, 1909, 2127
XspI CTAG 2 cut(s) 1646, 1943
ZraI GACGTC 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.