Rmu_sc0002316.1_g000095

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002316.1
OG0000039
Physical Location & Seq
Reverse (-)
415758 .. 424849
9092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002316.1_g000095.1.cds

Sequence Viewer

Length: 3243 bp
atggctgctgcgcttgctggtggagcagtgttagggacagtattttcagagctgtacaagggcgttcagacactgatcagaacatctaagcattttaaagaccttgccaaaaacattaaattgaaattagaacgcttgctaccactgatcaagcagattgaggaacaaaacatggaacttggtcgctcgaactatcttctccgaattctagcgaaccttagccgccattgctggggatctaagcaacaacggtcggcgccaccaccaagcggaatcttctccgcctctcactgcctccttgcggtgactcaacatcagtctcttttgacgagctcccaaccaattgctgggaagaaggatggttttgccactatcggaatctcatgttggagaacattaaccggagaggttttcagtcgtgtgtttggtcgaatccgaccaaatagagcgcggctcaaggtcggtgatgtgcaaccatcgctatggaggtttgggcaaggagatttggtcggaattgtgtggagtgacttgatggccaagcagacggtgcttgcaattataaagccagtggccactgaccctgtatggtggctgacggcgacggtagtccggtttgctggaggtgcagcgctgatgaatcgatcatggcaacggagggatagtctgaagggagcggcggtggtcctgatgaaagctaagattgcgttgatccttcttgtttcactggttcaaccttttctgggacgcattgatttggattttcgtcttgaaccatcatcaccacaaatggtattagtcagaggagaagctttagaagcatcatttgtggcactgtatgatgccataaaggaagtaaatgaacatcatttgatgtttaaagccctccttggagatatcagatctacactagattctatagaaccactgatcaaagagacagcagaggatgacaaggagttggattttccagaggatgaacttcagaattttggagtacaaatggaagaggggattgagctaattcgcaagtgctctaaggttggtccattgagtacttacaaaaaatataaatacacaaacaaactaggtgaactgggaaaatctttgcaaagactgttggatatactgaaagtgcatagcataagagatgtgaagaaaaccttggttaccataaagaatattgagactaaggtccagcaaattgatgtgaatattgggatacaaaataatccatctgaaagtattgaaggttcatgtgcaatacctgaacctccaccacttgtagttggattggatgggcctttgaaggaattgaagatgaagcttttcagtgatgagatatcaatgcttgtgctaactgctcctggaggatgtgggaaaactacattggcaacgaagttttgtcaagatggagacgtcagagataaattcaagaacaatatcttctttgtaactgtttccaagaagcccaacttaaaccttattgtagaagagctatatcaacgcaagggttcccaggtacccgatttccaacatgaagtaattgcacttaattggctgtacgaatttctaaaccaaatgggacaagatcctttcctattggttttggatgatgtttggtctgaatctgaatttcttcttgagaagtttgatgaatggagaatgtctaactgcaagatcttggtgacatcaaggtttgcatttccaagatttggttctccatataatttgaaatcattgagtgatgaagatgcatttgctctttttaatcattcagcatacttgggagatgttcgctctcatgttccagaagaccttgcaagacaggtaataaaacattgtaaaggatttcctcttgcaattacagtggttggaagatcactttgtgggcagcctatagagatctggcaaaaaagattaattgaatggactaaaggttcatctattcttgattctgatcatgatttgcttgtttgcctccaaagcagccttgatgccttggagaaacaaagtattaccatcaaggaatgtttcctagaccttggttcatttccagaagaccaaagaatacctgctactaccctcattgatatatgggcggagtcatataaaatagatgaagactggctttgcattgcaaacctctgtgaactcaccaatagaaatctggctactcttataatcacaaggaaggacccgagggaggtggatggctattacagtgaacattttgttactctgcatgacattattagagaattggctatctatcagtcaagtgtggaatcaatagaacagagaaaaaggctgataatagatatgtctggagacaattttcccgagtggtggacggaacagaaatgtcaacccatcaatgctcaccttttatctatctcgacagatggagacttctcatctaaatggctcaacatgcaactaccacaagcagaggttctaattctgaactttcagtcaaagaagtatgccttacctgaatttgtggagaaaatggacaaattaaaggttctgatagtcacaaaatacggtcttttacctgctgaattggataactttccattacttggttcattatcaaatctaaagagaattagattagaacgaatagcaataccttccatgagcaagacccctgtacagttgaagagtttagaaaagatatcattattcatgtgcaaagtgggtcaagcctttgacaactgttccatcgaactttttaatctattgccaaatgtagtggaaatgaacattgattactgcaatgatttggtgaaattgcccgccatgctttgtgacctaatttgcctgaaaaagcttagtatcaccaattctcacaagctatctgtcttacctgaagaaataggaaagttagtgaacttaaaagtgttgaggcttaggtcttgtactgaattgtcagagctgccagactcgattcggaacctcaaattgttaaattttctggacatatctgattgctttagtatgaaggagcttcctgaacatattggtgaaatgtgcagcttagaaacgctaaatatgagacaatgctcaagactgcaagagttgcctgcatcagttttggatcttgaacacttgaaggatgtgatttgtgatgaagagactgaaatattatggaaccccttcttacccattctccccaacttacatatcagggtagtgaaagaagatattaacctgaattggctccacacgtttccatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

1080

Amino Acids

122.27

Weight (kDa)

6.14

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 560, 2180
AatII GACGTC 1 cut(s) 1419
Acc36I ACCTGC 2 cut(s) 2080, 2563
Acc65I GGTACC 1 cut(s) 1519
AccB1I GGYRCC 2 cut(s) 256, 1519
AccB7I CCANNNNNTGG 3 cut(s) 347, 1712, 2582
AccBSI CCGCTC 1 cut(s) 674
AccII CGCG 1 cut(s) 451
AciI CCGC 9 cut(s) 223, 270, 282, 302, 451, 674, 677, 2099, 2799
AclWI GGATC 4 cut(s) 244, 703, 1583, 3108
AcoI YGGCCR 2 cut(s) 534, 570
AcsI RAATTY 7 cut(s) 204, 985, 1427, 1565, 1631, 2495, 2971
AcuI CTGAAG 3 cut(s) 686, 965, 2892
AcyI GRCGYC 2 cut(s) 257, 1416
AdeI CACNNNGTG 1 cut(s) 1886
AfaI GTAC 7 cut(s) 56, 996, 1054, 1521, 1562, 2655, 2923
AfeI AGCGCT 1 cut(s) 630
AfiI CCNNNNNNNGG 9 cut(s) 232, 269, 301, 347, 740, 1712, 2203, 2346, 2582
AflIII ACRYGT 1 cut(s) 3228
AjnI CCWGG 2 cut(s) 1363, 1515
AjuI GAANNNNNNNTTGG 8 cut(s) 370, 402, 1145, 1177, 1370, 1402, 1699, 1731
AloI GAACNNNNNNTCC 2 cut(s) 1921, 1953
Alw21I GWGCWC 2 cut(s) 335, 1034
Alw26I GTCTC 8 cut(s) 324, 929, 1178, 1407, 2322, 2400, 3052, 3131
AlwI GGATC 4 cut(s) 244, 703, 1583, 3108
AlwNI CAGNNNCTG 1 cut(s) 73
Ama87I CYCGRG 2 cut(s) 2197, 2339
Aor51HI AGCGCT 1 cut(s) 630
AoxI GGCC 3 cut(s) 534, 570, 1298
ApeKI GCWGC 7 cut(s) 5, 8, 626, 1891, 1986, 2938, 3036
ApoI RAATTY 7 cut(s) 204, 985, 1427, 1565, 1631, 2495, 2971
AseI ATTAAT 1 cut(s) 1919
Asp700I GAANNNNTTC 3 cut(s) 1325, 1635, 3158
Asp718I GGTACC 1 cut(s) 1519
AspLEI GCGC 4 cut(s) 13, 259, 451, 631
AspS9I GGNCC 5 cut(s) 682, 1043, 1192, 1298, 2194
AvaI CYCGRG 2 cut(s) 2197, 2339
AvaII GGWCC 4 cut(s) 682, 1043, 1192, 2194
BalI TGGCCA 2 cut(s) 536, 572
BanI GGYRCC 2 cut(s) 256, 1519
BanII GRGCYC 1 cut(s) 335
BbsI GAAGAC 3 cut(s) 1818, 2064, 2127
Bbv12I GWGCWC 2 cut(s) 335, 1034
BbvI GCAGC 5 cut(s) 638, 1903, 1998, 2925, 3048
BceAI ACGGC 1 cut(s) 612
BciT130I CCWGG 2 cut(s) 1365, 1517
BciVI GTATCC 1 cut(s) 1212
BclI TGATCA 4 cut(s) 75, 147, 927, 1957
BcoDI GTCTC 8 cut(s) 324, 929, 1178, 1407, 2322, 2400, 3052, 3131
BfaI CTAG 4 cut(s) 209, 908, 1085, 2036
BfmI CTRYAG 2 cut(s) 915, 1896
BfoI RGCGCY 2 cut(s) 260, 632
BfuAI ACCTGC 2 cut(s) 2080, 2563
BfuI GTATCC 1 cut(s) 1212
BglII AGATCT 3 cut(s) 899, 1677, 1902
BmcAI AGTACT 1 cut(s) 1054
Bme1390I CCNGG 2 cut(s) 1365, 1517
Bme18I GGWCC 4 cut(s) 682, 1043, 1192, 2194
BmeT110I CYCGRG 2 cut(s) 2197, 2339
BmgT120I GGNCC 5 cut(s) 682, 1043, 1192, 1298, 2194
BmiI GGNNCC 7 cut(s) 258, 1513, 1521, 2196, 2957, 3155, 3224
BmrFI CCNGG 2 cut(s) 1365, 1517
BmrI ACTGGG 1 cut(s) 1103
BmsI GCATC 5 cut(s) 827, 829, 1741, 1984, 3098
BmuI ACTGGG 1 cut(s) 1103
BoxI GACNNNNGTC 2 cut(s) 605, 1190
BpiI GAAGAC 3 cut(s) 1818, 2064, 2127
BplI GAGNNNNNCTC 2 cut(s) 438, 470
BpmI CTGGAG 3 cut(s) 639, 1386, 2346
Bpu10I CCTNAGC 2 cut(s) 218, 2912
BpuEI CTTGAG 3 cut(s) 440, 1661, 3052
Bsa29I ATCGAT 1 cut(s) 640
BsaBI GATNNNNATC 1 cut(s) 1956
BsaHI GRCGYC 2 cut(s) 257, 1416
BsaJI CCNNGG 6 cut(s) 886, 1161, 1515, 1998, 2041, 2198
BsaWI WCCGGW 2 cut(s) 401, 609
BsaXI ACNNNNNCTCC 8 cut(s) 492, 522, 646, 663, 676, 693, 3156, 3186
Bsc4I CCNNNNNNNGG 9 cut(s) 232, 269, 301, 347, 740, 1712, 2203, 2346, 2582
Bse1I ACTGG 4 cut(s) 566, 729, 1098, 2129
Bse3DI GCAATG 3 cut(s) 226, 2133, 2785
Bse8I GATNNNNATC 1 cut(s) 1956
BseBI CCWGG 2 cut(s) 1365, 1517
BseCI ATCGAT 1 cut(s) 640
BseDI CCNNGG 6 cut(s) 886, 1161, 1515, 1998, 2041, 2198
BseGI GGATG 8 cut(s) 364, 952, 979, 1300, 1376, 1615, 2215, 3124
BseJI GATNNNNATC 1 cut(s) 1956
BseLI CCNNNNNNNGG 9 cut(s) 232, 269, 301, 347, 740, 1712, 2203, 2346, 2582
BseMI GCAATG 3 cut(s) 226, 2133, 2785
BseNI ACTGG 4 cut(s) 566, 729, 1098, 2129
BseRI GAGGAG 1 cut(s) 816
BseXI GCAGC 5 cut(s) 638, 1903, 1998, 2925, 3048
BseYI CCCAGC 2 cut(s) 231, 347
BsgI GTGCAG 2 cut(s) 645, 3055
Bsh1236I CGCG 1 cut(s) 451
Bsh1285I CGRYCG 1 cut(s) 254
BshFI GGCC 3 cut(s) 536, 572, 1300
BshNI GGYRCC 2 cut(s) 256, 1519
BshVI ATCGAT 1 cut(s) 640
BsiEI CGRYCG 1 cut(s) 254
BsiHKAI GWGCWC 2 cut(s) 335, 1034
BsiHKCI CYCGRG 2 cut(s) 2197, 2339
BsiSI CCGG 2 cut(s) 402, 610
BslFI GGGAC 3 cut(s) 49, 756, 1596
BslI CCNNNNNNNGG 9 cut(s) 232, 269, 301, 347, 740, 1712, 2203, 2346, 2582
BsmAI GTCTC 8 cut(s) 324, 929, 1178, 1407, 2322, 2400, 3052, 3131
BsmBI CGTCTC 1 cut(s) 1407
BsmFI GGGAC 3 cut(s) 49, 756, 1596
BsnI GGCC 3 cut(s) 536, 572, 1300
BsoBI CYCGRG 2 cut(s) 2197, 2339
Bsp1286I GDGCHC 2 cut(s) 335, 1034
Bsp1407I TGTACA 2 cut(s) 54, 2653
BspACI CCGC 9 cut(s) 223, 270, 282, 302, 451, 674, 677, 2099, 2799
BspANI GGCC 3 cut(s) 536, 572, 1300
BspDI ATCGAT 1 cut(s) 640
BspFNI CGCG 1 cut(s) 451
BspHI TCATGA 1 cut(s) 1960
BspLI GGNNCC 7 cut(s) 258, 1513, 1521, 2196, 2957, 3155, 3224
BspMI ACCTGC 2 cut(s) 2080, 2563
BspPI GGATC 4 cut(s) 244, 703, 1583, 3108
BspQI GCTCTTC 1 cut(s) 1485
BspT107I GGYRCC 2 cut(s) 256, 1519
BsrBI CCGCTC 1 cut(s) 674
BsrDI GCAATG 3 cut(s) 226, 2133, 2785
BsrGI TGTACA 2 cut(s) 54, 2653
BsrI ACTGG 4 cut(s) 566, 729, 1098, 2129
BssECI CCNNGG 6 cut(s) 886, 1161, 1515, 1998, 2041, 2198
BssNI GRCGYC 2 cut(s) 257, 1416
BssT1I CCWWGG 4 cut(s) 886, 1161, 1998, 2041
Bst2UI CCWGG 2 cut(s) 1365, 1517
Bst6I CTCTTC 4 cut(s) 999, 1485, 2657, 3129
BstACI GRCGYC 2 cut(s) 257, 1416
BstAPI GCANNNNNTGC 2 cut(s) 547, 3082
BstAUI TGTACA 2 cut(s) 54, 2653
BstC8I GCNNGC 5 cut(s) 15, 137, 552, 2799, 3087
BstDEI CTNAG 9 cut(s) 87, 218, 240, 696, 1035, 1188, 2834, 2912, 3040
BstEII GGTNACC 1 cut(s) 1165
BstF5I GGATG 8 cut(s) 364, 952, 979, 1300, 1376, 1615, 2215, 3124
BstFNI CGCG 1 cut(s) 451
BstH2I RGCGCY 2 cut(s) 260, 632
BstHHI GCGC 4 cut(s) 13, 259, 451, 631
BstMAI GTCTC 8 cut(s) 324, 929, 1178, 1407, 2322, 2400, 3052, 3131
BstMCI CGRYCG 1 cut(s) 254
BstNI CCWGG 2 cut(s) 1365, 1517
BstNSI RCATGY 1 cut(s) 2434
BstPAI GACNNNNGTC 2 cut(s) 605, 1190
BstPI GGTNACC 1 cut(s) 1165
BstSCI CCNGG 2 cut(s) 1363, 1515
BstSFI CTRYAG 2 cut(s) 915, 1896
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 5 cut(s) 638, 1903, 1998, 2925, 3048
BstV2I GAAGAC 3 cut(s) 1818, 2064, 2127
BstX2I RGATCY 6 cut(s) 236, 899, 1588, 1677, 1902, 3100
BstXI CCANNNNNNTGG 1 cut(s) 483
BstYI RGATCY 6 cut(s) 236, 899, 1588, 1677, 1902, 3100
Bsu15I ATCGAT 1 cut(s) 640
BsuI GTATCC 1 cut(s) 1212
BsuRI GGCC 3 cut(s) 536, 572, 1300
BsuTUI ATCGAT 1 cut(s) 640
BtgZI GCGATG 1 cut(s) 462
BtsCI GGATG 8 cut(s) 364, 952, 979, 1300, 1376, 1615, 2215, 3124
BtsI GCAGTG 2 cut(s) 33, 289
BveI ACCTGC 2 cut(s) 2080, 2563
Cac8I GCNNGC 5 cut(s) 15, 137, 552, 2799, 3087
CaiI CAGNNNCTG 1 cut(s) 73
CciI TCATGA 1 cut(s) 1960
CfoI GCGC 4 cut(s) 13, 259, 451, 631
Cfr13I GGNCC 5 cut(s) 682, 1043, 1192, 1298, 2194
ClaI ATCGAT 1 cut(s) 640
CseI GACGC 1 cut(s) 753
Csp6I GTAC 7 cut(s) 55, 995, 1053, 1520, 1561, 2654, 2922
CspCI CAANNNNNGTGG 4 cut(s) 1848, 1883, 2736, 2771
CviQI GTAC 7 cut(s) 55, 995, 1053, 1520, 1561, 2654, 2922
DdeI CTNAG 9 cut(s) 87, 218, 240, 696, 1035, 1188, 2834, 2912, 3040
DinI GGCGCC 1 cut(s) 258
DraI TTTAAA 2 cut(s) 97, 877
DraIII CACNNNGTG 1 cut(s) 1886
EaeI YGGCCR 2 cut(s) 534, 570
Eam1104I CTCTTC 4 cut(s) 999, 1485, 2657, 3129
EarI CTCTTC 4 cut(s) 999, 1485, 2657, 3129
EciI GGCGGA 2 cut(s) 271, 2114
Ecl136II GAGCTC 1 cut(s) 333
Eco130I CCWWGG 4 cut(s) 886, 1161, 1998, 2041
Eco24I GRGCYC 1 cut(s) 335
Eco32I GATATC 3 cut(s) 895, 1341, 2679
Eco47I GGWCC 4 cut(s) 682, 1043, 1192, 2194
Eco47III AGCGCT 1 cut(s) 630
Eco53kI GAGCTC 1 cut(s) 333
Eco57I CTGAAG 3 cut(s) 686, 965, 2892
Eco88I CYCGRG 2 cut(s) 2197, 2339
Eco91I GGTNACC 1 cut(s) 1165
EcoICRI GAGCTC 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 2194
EcoO65I GGTNACC 1 cut(s) 1165
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 1363, 1515
EcoRV GATATC 3 cut(s) 895, 1341, 2679
EcoT14I CCWWGG 4 cut(s) 886, 1161, 1998, 2041
EcoT22I ATGCAT 1 cut(s) 1756
EcoT38I GRGCYC 1 cut(s) 335
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
ErhI CCWWGG 4 cut(s) 886, 1161, 1998, 2041
Esp3I CGTCTC 1 cut(s) 1407
FaqI GGGAC 3 cut(s) 49, 756, 1596
FauI CCCGC 1 cut(s) 2806
FbaI TGATCA 4 cut(s) 75, 147, 927, 1957
FokI GGATG 8 cut(s) 371, 959, 986, 1307, 1383, 1622, 2222, 3131
FriOI GRGCYC 1 cut(s) 335
FspBI CTAG 4 cut(s) 209, 908, 1085, 2036
GlaI GCGC 4 cut(s) 12, 258, 450, 630
GsaI CCCAGC 2 cut(s) 235, 351
GsuI CTGGAG 3 cut(s) 639, 1386, 2346
HaeII RGCGCY 2 cut(s) 260, 632
HaeIII GGCC 3 cut(s) 536, 572, 1300
HapII CCGG 2 cut(s) 402, 610
HgaI GACGC 1 cut(s) 753
HhaI GCGC 4 cut(s) 13, 259, 451, 631
Hin1I GRCGYC 2 cut(s) 257, 1416
Hin6I GCGC 4 cut(s) 11, 257, 449, 629
HinP1I GCGC 4 cut(s) 11, 257, 449, 629
HincII GTYRAC 1 cut(s) 2366
HindII GTYRAC 1 cut(s) 2366
HindIII AAGCTT 3 cut(s) 807, 1322, 2831
HpaII CCGG 2 cut(s) 402, 610
Hpy166II GTNNAC 6 cut(s) 1091, 2150, 2225, 2349, 2366, 2893
Hpy8I GTNNAC 6 cut(s) 1091, 2150, 2225, 2349, 2366, 2893
Hpy99I CGWCG 1 cut(s) 604
HpyCH4IV ACGT 2 cut(s) 1416, 3230
HpyF3I CTNAG 9 cut(s) 87, 218, 240, 696, 1035, 1188, 2834, 2912, 3040
HpySE526I ACGT 2 cut(s) 1416, 3230
Hsp92I GRCGYC 2 cut(s) 257, 1416
HspAI GCGC 4 cut(s) 11, 257, 449, 629
KasI GGCGCC 1 cut(s) 256
KpnI GGTACC 1 cut(s) 1523
Ksp22I TGATCA 4 cut(s) 75, 147, 927, 1957
LguI GCTCTTC 1 cut(s) 1485
LmnI GCTCC 6 cut(s) 23, 338, 671, 1366, 3007, 3228
Lsp1109I GCAGC 5 cut(s) 638, 1903, 1998, 2925, 3048
LweI GCATC 5 cut(s) 827, 829, 1741, 1984, 3098
MaeI CTAG 4 cut(s) 209, 908, 1085, 2036
MaeII ACGT 2 cut(s) 1416, 3230
MaeIII GTNAC 8 cut(s) 304, 524, 1165, 1450, 1684, 2233, 2533, 2810
MbiI CCGCTC 1 cut(s) 674
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 6 cut(s) 236, 899, 1588, 1677, 1902, 3100
MhlI GDGCHC 2 cut(s) 335, 1034
MlsI TGGCCA 2 cut(s) 536, 572
MluNI TGGCCA 2 cut(s) 536, 572
Mly113I GGCGCC 1 cut(s) 257
MlyI GAGTC 3 cut(s) 301, 2111, 2939
MmeI TCCRAC 8 cut(s) 368, 460, 490, 939, 1098, 1267, 1555, 1852
Mox20I TGGCCA 2 cut(s) 536, 572
Mph1103I ATGCAT 1 cut(s) 1756
MroXI GAANNNNTTC 3 cut(s) 1325, 1635, 3158
MscI TGGCCA 2 cut(s) 536, 572
MslI CAYNNNNRTG 3 cut(s) 481, 2419, 3024
Msp20I TGGCCA 2 cut(s) 536, 572
MspI CCGG 2 cut(s) 402, 610
MspR9I CCNGG 2 cut(s) 1365, 1517
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 2 cut(s) 1365, 1517
MvnI CGCG 1 cut(s) 451
NarI GGCGCC 1 cut(s) 257
NlaIV GGNNCC 7 cut(s) 258, 1513, 1521, 2196, 2957, 3155, 3224
NmuCI GTSAC 5 cut(s) 304, 524, 1684, 2533, 2810
NsiI ATGCAT 1 cut(s) 1756
NspI RCATGY 1 cut(s) 2434
PagI TCATGA 1 cut(s) 1960
PciSI GCTCTTC 1 cut(s) 1485
PdmI GAANNNNTTC 3 cut(s) 1325, 1635, 3158
PfeI GAWTC 9 cut(s) 273, 378, 432, 637, 911, 1625, 1952, 2285, 2950
PflMI CCANNNNNTGG 3 cut(s) 347, 1712, 2582
PfoI TCCNGGA 1 cut(s) 1363
PleI GAGTC 3 cut(s) 301, 2110, 2939
PluTI GGCGCC 1 cut(s) 260
PpsI GAGTC 3 cut(s) 301, 2110, 2939
PpuMI RGGWCCY 1 cut(s) 2194
PshAI GACNNNNGTC 2 cut(s) 605, 1190
PshBI ATTAAT 1 cut(s) 1919
PsiI TTATAA 2 cut(s) 560, 2180
Psp124BI GAGCTC 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 2194
Psp6I CCWGG 2 cut(s) 1363, 1515
PspEI GGTNACC 1 cut(s) 1165
PspFI CCCAGC 2 cut(s) 231, 347
PspGI CCWGG 2 cut(s) 1363, 1515
PspN4I GGNNCC 7 cut(s) 258, 1513, 1521, 2196, 2957, 3155, 3224
PspPI GGNCC 5 cut(s) 682, 1043, 1192, 1298, 2194
PspPPI RGGWCCY 1 cut(s) 2194
PsrI GAACNNNNNNTAC 6 cut(s) 123, 155, 1234, 1266, 2756, 2788
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 6 cut(s) 236, 899, 1588, 1677, 1902, 3100
RsaI GTAC 7 cut(s) 56, 996, 1054, 1521, 1562, 2655, 2923
RsaNI GTAC 7 cut(s) 55, 995, 1053, 1520, 1561, 2654, 2922
RseI CAYNNNNRTG 3 cut(s) 481, 2419, 3024
SacI GAGCTC 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 1485
Sau96I GGNCC 5 cut(s) 682, 1043, 1192, 1298, 2194
ScaI AGTACT 1 cut(s) 1054
SchI GAGTC 3 cut(s) 301, 2111, 2939
ScrFI CCNGG 2 cut(s) 1365, 1517
SduI GDGCHC 2 cut(s) 335, 1034
SfaNI GCATC 5 cut(s) 827, 829, 1741, 1984, 3098
SfcI CTRYAG 2 cut(s) 915, 1896
SfoI GGCGCC 1 cut(s) 258
SinI GGWCC 4 cut(s) 682, 1043, 1192, 2194
SmiMI CAYNNNNRTG 3 cut(s) 481, 2419, 3024
SmlI CTYRAG 3 cut(s) 455, 1640, 3067
SmoI CTYRAG 3 cut(s) 455, 1640, 3067
SsiI CCGC 9 cut(s) 223, 270, 282, 302, 451, 674, 677, 2099, 2799
SspDI GGCGCC 1 cut(s) 256
SspI AATATT 3 cut(s) 1180, 1213, 3147
SspMI CTAG 4 cut(s) 209, 908, 1085, 2036
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 1363, 1515
StyI CCWWGG 4 cut(s) 886, 1161, 1998, 2041
TaiI ACGT 2 cut(s) 1419, 3233
TaqI TCGA 6 cut(s) 188, 430, 640, 2396, 2727, 2948
TatI WGTACW 5 cut(s) 54, 994, 1052, 2653, 2921
TauI GCSGC 3 cut(s) 225, 454, 677
TfiI GAWTC 9 cut(s) 273, 378, 432, 637, 911, 1625, 1952, 2285, 2950
TseFI GTSAC 5 cut(s) 304, 524, 1684, 2533, 2810
TseI GCWGC 7 cut(s) 5, 8, 626, 1891, 1986, 2938, 3036
Tsp45I GTSAC 5 cut(s) 304, 524, 1684, 2533, 2810
TspGWI ACGGA 2 cut(s) 667, 2366
Van91I CCANNNNNTGG 3 cut(s) 347, 1712, 2582
VpaK11BI GGWCC 4 cut(s) 682, 1043, 1192, 2194
VspI ATTAAT 1 cut(s) 1919
XapI RAATTY 7 cut(s) 204, 985, 1427, 1565, 1631, 2495, 2971
XceI RCATGY 1 cut(s) 2434
XcmI CCANNNNNNNNNTGG 2 cut(s) 344, 2164
XmnI GAANNNNTTC 3 cut(s) 1325, 1635, 3158
XspI CTAG 4 cut(s) 209, 908, 1085, 2036
ZraI GACGTC 1 cut(s) 1417
ZrmI AGTACT 1 cut(s) 1054
Zsp2I ATGCAT 1 cut(s) 1756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.