Rroxscaffold_5G00356140

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000039
Physical Location & Seq
Reverse (-)
35286001 .. 35290153
4153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356140.1

Sequence Viewer

Length: 1917 bp
ATGGGTCTGGTCACTGGTCATCCAGGCTCTGGGAAAACCACTTTGGCAAAAGCTCTTTGTCAAGATAAGAAAGTGAAAGACAAATTCAAGGGCATCATCTTTGTCGACGTTTCAAAAAGACCCAACACTGAGGTTGTGCAGGAAATATGTGAAAAAAAGGGTACCCAAATACTTTCTTTCCAATCCGAAGAAATTGCACTTGACTGGCTGCAACAACTTCTGAATAACACAGAAGAAGATCCTGTGCTTTTGGTCCTGGATAACGTTTGGCCTGGAAACAGGACAGAATCCCTCCTGGCGAGCTTTAAGTTCAAAGAATCGGAAATGTCAAATTACAAGATTTTGGTGACATCAAGATATATGTTGCCAGGATTTGATGTTGAATACCACGTAGAAGAATTGAATGATAATGATGCAATGAGTCTTCTCCGTAATTCAGCACGCCTCACAAGTTCTTCTTCTATTCCAGAAGATCTTCAGAGACAGGTTGTGGAGTGCTGTAAGAGACTTCCACTGGCTATTGAAGTGGTCGGAAGATCACTTTTCGGCAAGAATATTGTGATCTGGAAAGATAGAGTAGAAGCATGGTCTAGCGGTTCTTCTGTCATCAAGTCTGAAAAACATTTGCTTGTTTGCCTCCAAAGTAGTTTAGATGCCCTGGGTGAAGAAAATGCCCTCATCAAGGAATGTTTCATGGACCTTGCTTCATTTCCTCAAGGCCGAAGGATTCCTGCTTCTGTCCTGATTGATATCTGGAGTGTCCTCATTGATATGTGGGCTGCGGATAAAGATAGTTCATGTGTTGCAAAACTCTACGAGCTCACCTACTGGAGGCTGGCTAATCTTGTAATCACGAGGAATGAGAAGGGGGAGGTGGATGACTACTATGGTGAACACTTCGTTACCCAACATGATCTCCTTAGAGAGCTGGCTGTCCACCAGACAGATGAGGGCCCTGTAAAACTGAGGAGAAGACTGATTATAAACATACGTGGAAACAAACTTCCCAAGTGGTGGAAAAAACAAATGGATCAGCCCTTCGAAGAAGTTCTCCTAGTATCTATTTCAACTGATAGTCTCTTCTCATCAAAATGGCGCGACATACAGCTACCGAAAGCTAAAGTTCTAGTTCTGAATTTCCACACAAAGAACTATGCATTGCCCGAATTTGTGAAGAAAATGGAGAAATTGAAGGTTCTAATAGTCACAAATTATGGGTTCTTACCAGCTGAAGTGAGTAATTTTACATTGCAGGGTTCTTCATCTAAACTAAAGAGGATAAGATTAGAGCGGATTTCTCTTTCTTCCATTACCAAGAACCCCATAGTATTGAAGAGACTACAGAAGATATCTTTCTTCATGTGTAACATGGGGCAAGCTTTTAGCAAAGGTTCCATCAAATTTTTTGAGGCATTCCCAGACCTTCAAGAAATCAACATTGACTATTGCAGTGATTTGGTGGAATTACCTGCTGACATCTGTCTTCTAATCCATCTAAAAAAGCTCAGCATCACCAACTGTCATAAGCTATCTGCCTTGCCTGAAATGATTGGAGAGCTAGTCAATTTAGAAGTTTTGGGGTTAAGGTCCTGCACAGACTTGTCAGAGCTGCCAAGTTCAGTTAGGAAACTCAAAAAACTAAAGGTTCTTGACATATCCAATTGCTACAGCATTAAGGAGTTGCCTGAACACATTGGTGAAATGTGCTGCTTACAAAAGCTCAACATGAAGCAGTGCTCGAGAATGCAAGAGCTGCCTGAATCAATTTTGGATCTTGAAACGTTGACTGATGTGATATGTGATGAAGAGACAAAATTGTTTTGGGAAACTTACTCGCCCTGTCTCAGCAACCACATACAGATAACGGCGGTCAAAGAGGAAATCAACCTAGATTGGCTTTATATGCGTCACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

638

Amino Acids

72.95

Weight (kDa)

6.37

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_22 PF13401 1 - 89 1.9e-07 AAA domain
NB-ARC PF00931 4 - 146 9e-14 NB-ARC domain
LRR_14 PF23598 472 - 555 8e-11 Leucine-rich repeat region
LRR_14 PF23598 550 - 606 2.8e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 983
Acc36I ACCTGC 1 cut(s) 1477
Acc65I GGTACC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 161
AccB7I CCANNNNNTGG 2 cut(s) 29, 1014
AccBSI CCGCTC 1 cut(s) 1291
AccI GTMKAC 1 cut(s) 105
AccII CGCG 1 cut(s) 1098
AciI CCGC 4 cut(s) 594, 782, 1291, 1868
AclI AACGTT 2 cut(s) 264, 1781
AclWI GGATC 3 cut(s) 233, 1038, 1779
AcsI RAATTY 4 cut(s) 83, 1135, 1166, 1400
AcuI CTGAAG 2 cut(s) 461, 1251
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 4 cut(s) 29, 682, 831, 1014
AjnI CCWGG 6 cut(s) 22, 255, 271, 294, 367, 657
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AleI CACNNNNGTG 1 cut(s) 1695
Alw21I GWGCWC 2 cut(s) 822, 1739
Alw26I GTCTC 6 cut(s) 475, 499, 1082, 1330, 1802, 1847
AlwI GGATC 3 cut(s) 233, 1038, 1779
AlwNI CAGNNNCTG 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 1738
AoxI GGCC 3 cut(s) 269, 718, 952
ApaI GGGCCC 1 cut(s) 956
ApeKI GCWGC 5 cut(s) 208, 779, 1609, 1707, 1753
ApoI RAATTY 4 cut(s) 83, 1135, 1166, 1400
Asp700I GAANNNNTTC 2 cut(s) 474, 1047
Asp718I GGTACC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 1098
AspS9I GGNCC 5 cut(s) 253, 697, 952, 953, 1587
AsuHPI GGTGA 6 cut(s) 358, 674, 814, 902, 1504, 1709
AsuII TTCGAA 1 cut(s) 1041
AvaI CYCGRG 1 cut(s) 1738
AvaII GGWCC 3 cut(s) 253, 697, 1587
BaeGI GKGCMC 1 cut(s) 956
BanI GGYRCC 1 cut(s) 161
BanII GRGCYC 2 cut(s) 822, 956
BauI CACGAG 1 cut(s) 853
BbsI GAAGAC 3 cut(s) 416, 979, 1475
Bbv12I GWGCWC 2 cut(s) 822, 1739
BbvI GCAGC 5 cut(s) 195, 766, 1596, 1694, 1740
BccI CCATC 2 cut(s) 1403, 1500
BceAI ACGGC 1 cut(s) 1881
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 6 cut(s) 24, 257, 273, 296, 369, 659
BcoDI GTCTC 6 cut(s) 475, 499, 1082, 1330, 1802, 1847
BfaI CTAG 5 cut(s) 591, 1055, 1127, 1559, 1889
BfmI CTRYAG 2 cut(s) 1340, 1666
BfuAI ACCTGC 1 cut(s) 1477
BglII AGATCT 1 cut(s) 472
BisI GCNGC 5 cut(s) 209, 780, 1610, 1708, 1754
BlpI GCTNAGC 1 cut(s) 1505
BlsI GCNGC 5 cut(s) 210, 781, 1611, 1709, 1755
Bme1390I CCNGG 6 cut(s) 24, 257, 273, 296, 369, 659
Bme18I GGWCC 3 cut(s) 253, 697, 1587
BmeT110I CYCGRG 1 cut(s) 1738
BmgT120I GGNCC 5 cut(s) 253, 697, 952, 953, 1587
BmiI GGNNCC 3 cut(s) 163, 954, 1393
BmrFI CCNGG 6 cut(s) 24, 257, 273, 296, 369, 659
BmsI GCATC 4 cut(s) 102, 403, 643, 1518
BoxI GACNNNNGTC 1 cut(s) 1479
BpiI GAAGAC 3 cut(s) 416, 979, 1475
BpmI CTGGAG 2 cut(s) 775, 850
Bpu1102I GCTNAGC 1 cut(s) 1505
Bpu14I TTCGAA 1 cut(s) 1041
BpuEI CTTGAG 1 cut(s) 699
BsaAI YACGTR 2 cut(s) 391, 992
BsaBI GATNNNNATC 1 cut(s) 749
BsaJI CCNNGG 2 cut(s) 657, 658
BsaXI ACNNNNNCTCC 4 cut(s) 900, 930, 1545, 1575
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 682, 831, 1014
Bse1I ACTGG 4 cut(s) 19, 209, 519, 833
Bse3DI GCAATG 3 cut(s) 423, 1157, 1247
Bse8I GATNNNNATC 1 cut(s) 749
BseBI CCWGG 6 cut(s) 24, 257, 273, 296, 369, 659
BseDI CCNNGG 2 cut(s) 657, 658
BseGI GGATG 2 cut(s) 19, 883
BseJI GATNNNNATC 1 cut(s) 749
BseLI CCNNNNNNNGG 4 cut(s) 29, 682, 831, 1014
BseMI GCAATG 3 cut(s) 423, 1157, 1247
BseMII CTCAG 4 cut(s) 120, 956, 1519, 1858
BseNI ACTGG 4 cut(s) 19, 209, 519, 833
BseRI GAGGAG 1 cut(s) 982
BseSI GKGCMC 1 cut(s) 956
BseXI GCAGC 5 cut(s) 195, 766, 1596, 1694, 1740
BsgI GTGCAG 2 cut(s) 158, 1576
Bsh1236I CGCG 1 cut(s) 1098
BshFI GGCC 3 cut(s) 271, 720, 954
BshNI GGYRCC 1 cut(s) 161
BsiHKAI GWGCWC 2 cut(s) 822, 1739
BsiHKCI CYCGRG 1 cut(s) 1738
BslI CCNNNNNNNGG 4 cut(s) 29, 682, 831, 1014
BsmAI GTCTC 6 cut(s) 475, 499, 1082, 1330, 1802, 1847
BsmI GAATGC 2 cut(s) 1412, 1749
BsnI GGCC 3 cut(s) 271, 720, 954
BsoBI CYCGRG 1 cut(s) 1738
Bsp119I TTCGAA 1 cut(s) 1041
Bsp120I GGGCCC 1 cut(s) 952
Bsp1286I GDGCHC 3 cut(s) 822, 956, 1739
Bsp143I GATC 7 cut(s) 238, 472, 536, 561, 913, 1030, 1771
Bsp1720I GCTNAGC 1 cut(s) 1505
BspACI CCGC 4 cut(s) 594, 782, 1291, 1868
BspANI GGCC 3 cut(s) 271, 720, 954
BspCNI CTCAG 4 cut(s) 121, 957, 1518, 1857
BspFNI CGCG 1 cut(s) 1098
BspLI GGNNCC 3 cut(s) 163, 954, 1393
BspMI ACCTGC 1 cut(s) 1477
BspPI GGATC 3 cut(s) 233, 1038, 1779
BspT104I TTCGAA 1 cut(s) 1041
BspT107I GGYRCC 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 1291
BsrDI GCAATG 3 cut(s) 423, 1157, 1247
BsrI ACTGG 4 cut(s) 19, 209, 519, 833
BssECI CCNNGG 2 cut(s) 657, 658
BssMI GATC 7 cut(s) 238, 472, 536, 561, 913, 1030, 1771
BssSI CACGAG 1 cut(s) 853
Bst2BI CACGAG 1 cut(s) 853
Bst2UI CCWGG 6 cut(s) 24, 257, 273, 296, 369, 659
Bst4CI ACNGT 1 cut(s) 1520
Bst6I CTCTTC 3 cut(s) 1085, 1328, 1800
BstAPI GCANNNNNTGC 1 cut(s) 1753
BstBAI YACGTR 2 cut(s) 391, 992
BstBI TTCGAA 1 cut(s) 1041
BstC8I GCNNGC 5 cut(s) 301, 442, 837, 930, 1377
BstDEI CTNAG 5 cut(s) 129, 920, 965, 1505, 1844
BstENI CCTNNNNNAGG 2 cut(s) 680, 829
BstF5I GGATG 2 cut(s) 19, 883
BstFNI CGCG 1 cut(s) 1098
BstHHI GCGC 1 cut(s) 1098
BstKTI GATC 7 cut(s) 241, 475, 539, 564, 916, 1033, 1774
BstMAI GTCTC 6 cut(s) 475, 499, 1082, 1330, 1802, 1847
BstMBI GATC 7 cut(s) 238, 472, 536, 561, 913, 1030, 1771
BstMWI GCNNNNNNNGC 2 cut(s) 1753, 1903
BstNI CCWGG 6 cut(s) 24, 257, 273, 296, 369, 659
BstPAI GACNNNNGTC 1 cut(s) 1479
BstSCI CCNGG 6 cut(s) 22, 255, 271, 294, 367, 657
BstSFI CTRYAG 2 cut(s) 1340, 1666
BstSLI GKGCMC 1 cut(s) 956
BstUI CGCG 1 cut(s) 1098
BstV1I GCAGC 5 cut(s) 195, 766, 1596, 1694, 1740
BstV2I GAAGAC 3 cut(s) 416, 979, 1475
BstX2I RGATCY 3 cut(s) 238, 472, 1771
BstYI RGATCY 3 cut(s) 238, 472, 1771
BsuRI GGCC 3 cut(s) 271, 720, 954
BtsCI GGATG 2 cut(s) 19, 883
BtsI GCAGTG 2 cut(s) 1456, 1739
BtsIMutI CAGTG 5 cut(s) 12, 126, 512, 1456, 1739
BveI ACCTGC 1 cut(s) 1477
Cac8I GCNNGC 5 cut(s) 301, 442, 837, 930, 1377
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 1 cut(s) 1098
Cfr13I GGNCC 5 cut(s) 253, 697, 952, 953, 1587
CseI GACGC 1 cut(s) 1895
Csp6I GTAC 1 cut(s) 162
CviAII CATG 7 cut(s) 585, 694, 798, 911, 1360, 1369, 1726
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 5 cut(s) 129, 920, 965, 1505, 1844
DpnI GATC 7 cut(s) 240, 474, 538, 563, 915, 1032, 1773
DpnII GATC 7 cut(s) 238, 472, 536, 561, 913, 1030, 1771
Eam1104I CTCTTC 3 cut(s) 1085, 1328, 1800
EarI CTCTTC 3 cut(s) 1085, 1328, 1800
Ecl136II GAGCTC 1 cut(s) 820
Eco24I GRGCYC 2 cut(s) 822, 956
Eco32I GATATC 2 cut(s) 751, 1350
Eco47I GGWCC 3 cut(s) 253, 697, 1587
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 2 cut(s) 461, 1251
Eco88I CYCGRG 1 cut(s) 1738
EcoICRI GAGCTC 1 cut(s) 820
EcoNI CCTNNNNNAGG 2 cut(s) 680, 829
EcoO109I RGGNCCY 3 cut(s) 952, 953, 1587
EcoRII CCWGG 6 cut(s) 22, 255, 271, 294, 367, 657
EcoRV GATATC 2 cut(s) 751, 1350
EcoT22I ATGCAT 1 cut(s) 1159
EcoT38I GRGCYC 2 cut(s) 822, 956
FaeI CATG 7 cut(s) 588, 697, 801, 914, 1363, 1372, 1729
FalI AAGNNNNNCTT 2 cut(s) 442, 474
FatI CATG 7 cut(s) 584, 693, 797, 910, 1359, 1368, 1725
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 5 cut(s) 209, 780, 1610, 1708, 1754
FokI GGATG 2 cut(s) 6, 890
FriOI GRGCYC 2 cut(s) 822, 956
Fsp4HI GCNGC 5 cut(s) 209, 780, 1610, 1708, 1754
FspBI CTAG 5 cut(s) 591, 1055, 1127, 1559, 1889
GlaI GCGC 1 cut(s) 1097
GluI GCNGC 5 cut(s) 209, 780, 1610, 1708, 1754
GsuI CTGGAG 2 cut(s) 775, 850
HaeIII GGCC 3 cut(s) 271, 720, 954
HgaI GACGC 1 cut(s) 1895
HhaI GCGC 1 cut(s) 1098
Hin1II CATG 7 cut(s) 588, 697, 801, 914, 1363, 1372, 1729
Hin6I GCGC 1 cut(s) 1096
HinP1I GCGC 1 cut(s) 1096
HincII GTYRAC 2 cut(s) 106, 1785
HindII GTYRAC 2 cut(s) 106, 1785
HindIII AAGCTT 1 cut(s) 1377
HinfI GANTC 5 cut(s) 287, 317, 421, 727, 1760
HphI GGTGA 6 cut(s) 358, 674, 814, 902, 1504, 1709
Hpy166II GTNNAC 4 cut(s) 106, 893, 937, 1785
Hpy188I TCNGA 8 cut(s) 187, 222, 322, 480, 533, 616, 1134, 1606
Hpy8I GTNNAC 4 cut(s) 106, 893, 937, 1785
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 5 cut(s) 717, 859, 1048, 1186, 1433
HpyCH4III ACNGT 1 cut(s) 1520
HpyCH4IV ACGT 5 cut(s) 108, 264, 390, 991, 1781
HpyF10VI GCNNNNNNNGC 2 cut(s) 1753, 1903
HpyF3I CTNAG 5 cut(s) 129, 920, 965, 1505, 1844
HpySE526I ACGT 5 cut(s) 108, 264, 390, 991, 1781
Hsp92II CATG 7 cut(s) 588, 697, 801, 914, 1363, 1372, 1729
HspAI GCGC 1 cut(s) 1096
KpnI GGTACC 1 cut(s) 165
Kzo9I GATC 7 cut(s) 238, 472, 536, 561, 913, 1030, 1771
Lsp1109I GCAGC 5 cut(s) 195, 766, 1596, 1694, 1740
LweI GCATC 4 cut(s) 102, 403, 643, 1518
MaeI CTAG 5 cut(s) 591, 1055, 1127, 1559, 1889
MaeII ACGT 5 cut(s) 108, 264, 390, 991, 1781
MaeIII GTNAC 6 cut(s) 10, 346, 901, 1204, 1364, 1907
MalI GATC 7 cut(s) 240, 474, 538, 563, 915, 1032, 1773
MbiI CCGCTC 1 cut(s) 1291
MboI GATC 7 cut(s) 238, 472, 536, 561, 913, 1030, 1771
MfeI CAATTG 1 cut(s) 1660
MflI RGATCY 3 cut(s) 238, 472, 1771
MhlI GDGCHC 3 cut(s) 822, 956, 1739
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 511
Mph1103I ATGCAT 1 cut(s) 1159
MroXI GAANNNNTTC 2 cut(s) 474, 1047
MseI TTAA 3 cut(s) 306, 1583, 1674
MslI CAYNNNNRTG 3 cut(s) 770, 1090, 1695
MspA1I CMGCKG 1 cut(s) 1229
MspR9I CCNGG 6 cut(s) 24, 257, 273, 296, 369, 659
MunI CAATTG 1 cut(s) 1660
Mva1269I GAATGC 2 cut(s) 1412, 1749
MvaI CCWGG 6 cut(s) 24, 257, 273, 296, 369, 659
MvnI CGCG 1 cut(s) 1098
MwoI GCNNNNNNNGC 2 cut(s) 1753, 1903
NdeII GATC 7 cut(s) 238, 472, 536, 561, 913, 1030, 1771
NlaIII CATG 7 cut(s) 588, 697, 801, 914, 1363, 1372, 1729
NlaIV GGNNCC 3 cut(s) 163, 954, 1393
NmuCI GTSAC 4 cut(s) 10, 346, 1204, 1907
NsiI ATGCAT 1 cut(s) 1159
NspV TTCGAA 1 cut(s) 1041
OliI CACNNNNGTG 1 cut(s) 1695
PaeR7I CTCGAG 1 cut(s) 1738
PasI CCCWGGG 1 cut(s) 658
PctI GAATGC 2 cut(s) 1412, 1749
PdmI GAANNNNTTC 2 cut(s) 474, 1047
PfeI GAWTC 4 cut(s) 287, 317, 727, 1760
PflMI CCANNNNNTGG 2 cut(s) 29, 1014
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 5 cut(s) 210, 781, 1611, 1709, 1755
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
Ppu21I YACGTR 2 cut(s) 391, 992
PpuMI RGGWCCY 1 cut(s) 1587
PshAI GACNNNNGTC 1 cut(s) 1479
PsiI TTATAA 1 cut(s) 983
Psp124BI GAGCTC 1 cut(s) 822
Psp1406I AACGTT 2 cut(s) 264, 1781
Psp5II RGGWCCY 1 cut(s) 1587
Psp6I CCWGG 6 cut(s) 22, 255, 271, 294, 367, 657
PspGI CCWGG 6 cut(s) 22, 255, 271, 294, 367, 657
PspN4I GGNNCC 3 cut(s) 163, 954, 1393
PspOMI GGGCCC 1 cut(s) 952
PspPI GGNCC 5 cut(s) 253, 697, 952, 953, 1587
PspPPI RGGWCCY 1 cut(s) 1587
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 3 cut(s) 238, 472, 1771
PvuII CAGCTG 1 cut(s) 1229
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 3 cut(s) 770, 1090, 1695
SacI GAGCTC 1 cut(s) 822
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 3 cut(s) 306, 1583, 1674
SatI GCNGC 5 cut(s) 209, 780, 1610, 1708, 1754
Sau3AI GATC 7 cut(s) 238, 472, 536, 561, 913, 1030, 1771
Sau96I GGNCC 5 cut(s) 253, 697, 952, 953, 1587
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 6 cut(s) 24, 257, 273, 296, 369, 659
SduI GDGCHC 3 cut(s) 822, 956, 1739
SfaNI GCATC 4 cut(s) 102, 403, 643, 1518
SfcI CTRYAG 2 cut(s) 1340, 1666
Sfr274I CTCGAG 1 cut(s) 1738
SfuI TTCGAA 1 cut(s) 1041
SinI GGWCC 3 cut(s) 253, 697, 1587
SlaI CTCGAG 1 cut(s) 1738
SmiMI CAYNNNNRTG 3 cut(s) 770, 1090, 1695
SmlI CTYRAG 2 cut(s) 714, 1738
SmoI CTYRAG 2 cut(s) 714, 1738
SsiI CCGC 4 cut(s) 594, 782, 1291, 1868
SspI AATATT 1 cut(s) 556
SspMI CTAG 5 cut(s) 591, 1055, 1127, 1559, 1889
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 6 cut(s) 22, 255, 271, 294, 367, 657
TaaI ACNGT 1 cut(s) 1520
TaiI ACGT 5 cut(s) 111, 267, 393, 994, 1784
TaqI TCGA 3 cut(s) 105, 1041, 1739
TfiI GAWTC 4 cut(s) 287, 317, 727, 1760
Tru1I TTAA 3 cut(s) 306, 1583, 1674
Tru9I TTAA 3 cut(s) 306, 1583, 1674
TscAI CASTG 5 cut(s) 19, 133, 519, 1456, 1739
TseFI GTSAC 4 cut(s) 10, 346, 1204, 1907
TseI GCWGC 5 cut(s) 208, 779, 1609, 1707, 1753
Tsp45I GTSAC 4 cut(s) 10, 346, 1204, 1907
TspDTI ATGAA 7 cut(s) 682, 696, 786, 1251, 1348, 1742, 1818
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 5 cut(s) 19, 133, 519, 1456, 1739
Van91I CCANNNNNTGG 2 cut(s) 29, 1014
VpaK11BI GGWCC 3 cut(s) 253, 697, 1587
XagI CCTNNNNNAGG 2 cut(s) 680, 829
XapI RAATTY 4 cut(s) 83, 1135, 1166, 1400
XhoI CTCGAG 1 cut(s) 1738
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 2 cut(s) 474, 1047
XspI CTAG 5 cut(s) 591, 1055, 1127, 1559, 1889
Zsp2I ATGCAT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.