Rmu_sc0006561.1_g000033

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006561.1
OG0000039
Physical Location & Seq
Forward (+)
137030 .. 142666
5637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006561.1_g000033.1.cds

Sequence Viewer

Length: 3801 bp
atgtcgaatttcaacctcattgtacaacgactacagcaacgcaagggtacggaagtacctactttcgaagacgaagcaactgccctcaagtggctgcataaatttctgggggaaggacagacacctgtactgttggtcctggatgacgtttggccggaatcaagatctcttcttgaaaagtttgatggagtgaaggtgccaaattttaagattttggtgacatcaagatcacattttccaggatatggttctctacatcgtctaaattatttgttggatgatgaagatgcaatgactctttttcgccattcagcctccctgggagatgagagctctaatgttcgatggaacagtcttgctgcaaagatagtcaagcactgtaagggacatccacttgccattgtagtggttggaagatcactttacggaaaatcgtttgaattctggcttaaaagtgcaatgcagttgtctaaaggtgattctcttattgattctgaaattgaagtgcttctcgcgcttcaaagtagcttggatgctttggatgaaaacgaagctatcatcaaggaatgttttgtagaccttggttcatttcctgaagaccaaaaaatcccagttgctgccctcattgatatgtgggcagagttatataaagagctagatgaagattttttggccttggagattctgcaaaagcttgccactcggagcctggctgatcttgtagtcagtaggaacgagaatgcggaggatgatggctactacagtgaacattttgtgacccaacatgatcttcttagacagctggctatctaccaaacgaaactagacccaaatagaaaaagactgtttattggaagcggcagagacaatctgcccaagtccttgacagaacagaagcatcgacctatcaagcctcgcctagtatctatctcttctgatggggtgttctcaacaatatggcataacattgaactagctgaggttgaggttctagttttgaatttcaaaacagagaactatgctttgcccgaatttgtggagaaaatggagaacctgaaggttctaatagtcagaaatcatggttccttgcctgctgaattgagtaattttcacctactggattctttaccaaatctgaagagaatcagactagagaacgtttcaattccttccataaccaagcatcccatacagttgaagagtctaaagaagatctctttattcatgtgtagcattggtcaagctttcagcaattgttccttccaaatttcagatgcatttccatatttagaggaaatgaatattgactacagcaatgatttgttggaattgcctgacgagctctgcaatctgatttggctgaaaaagctcagtatcacaaactgtcataagctatccgtcttgccttatgagattggagggctgattaacttagaagttttgaggctaagggcttgtacaaacttggaaatacttccaagatctatcaaacacctgaagaagctaaatgttcttgacatagctaactgtgtcagcattgtggagttgtctgaagacattggcgaactaagcagtttaagaaagatcaacatgagacagtgctgtagattgcaagagctaccactatcagtttgggatcttaagcaactagaggaagtgatatgtgatgaggacgtaggagggttgtgggaacccttcctacccagactccacaacgtaagggtggtgatcatgcaagaagaatttaacctagattgtctccaaaatcccacggtacctgtacgtccagctgttcctgaacgcccgactgtttctgaacgccaggctgttcctgaacgcccaccagttcttgaaggtccaccagatactgttgggttggatttgcctttgaaggatttgaagaaattttttcttaaggaaggtaagtcaaggctcgtgcttattgctaatggaggactcgggaaaactacgttggcgagaaagttttttgaagatcaggacgtcaaaggtatattcaagaagaatatgttctttgttgttgcttcaagtaagcccagtttggaagctattgtccgagatttatatcaacaaaagcaagaacaagcagtaccgaagaagattcgcgactataaagctgcagttcaattgctggaagaccttctagaggaagcgggagaagaccctttgctgttggtactggatgatgtttggtctcccaaacttcttgatctatttaacaatttcaaaatgccaaattacaagtttctggtgacatcaagatcacaatttgaaaattttggtgaaacatatcctttagagcctttgaatcgtgaacatacaatggaactttttcgtgatttagcccacttgggagagaagatttctcttccggaagaagttcaagaaaagatttggaagatatgcaagggctatccacttatcattaaagtatttgcaacatcaatttgcaaacagcctgtggagaattggcaaaaatctgtaatgaaaatgtctggagcttctgttttggattctgagactgaagtgctcatctgcctccaaagaagcttagatcctctggataaaatcaccaggcaatgtttcatggaccttggttcattccctgaagacgaaaaaatctctgctgctgcccttattgatatgtggacagagctctatcctgagctaattgaggatacttgcattgagaacctctacaagctgagcagccggagtctggttgatcttcaagtcacagggaaggagaggatacaacgggatggctactacactgaacactttgtcatccagcatgacgtgcttagacaactggcgatcttccaagcgagactagaaccaattgaacagagacaaagactgaatattacagacacatctagcaatctacccattggccaagaaaaagaagaagaaccaaattcaactcttcagcccatcaaggctcgcctattatctatctcttctgatggtgtgttctcaacgaaatggaataccgtacaattaccagaaattgacgtactccttctgaatattaagtcgagtcgtaactatgcgttacctcaatttctggagagaacatccagattaaaggttctaataatcacaaagtatggtcgtgattctgctgagttgagtaattttcaactactgggtttgttaccaaatctgaagagaatcagattagagagtattttaactccttccataaccaagaacctcactcaactgaagagtcttgagaagataactttgtcctggtgcgacgatattgataaagctttcagcagctcttccatccaaattccacatgcatttccgaagctagtggaattaaacatcgacaattgcaacgatttagtgaaattgcctgccgaactctgtgatcttgtttctctaaagaaactcagtgttaccgagtgttataatctggttaccataccagaagcaattggaaagttggtcaaattagaattgctgaggctaagacgctgtacggagctgcaacagcttccagaatcgcttcacagcctcccagagttgaacttccttgacatagctgattgcgtcagcatgaagaagttgcctcagaacattggagcactgagtagtttagaaaagcttgacatgagaaaatgctctggactggaaaagcttccttcatcagttataaatcttcgtaagttacgggaagtgatatgcgatgaagagaaaaaaaagttatggggacgctatttggactttatggaaaacctaaggaaggtgggtccagtggagttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

1266

Amino Acids

144.54

Weight (kDa)

5.62

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000039)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66890 AT5G66900 AT5G66900 AT5G66900 AT5G66910
fragaria_vesca FvH4_1g15090 FvH4_1g15120 FvH4_1g15130 FvH4_1g15140 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15160 FvH4_1g15170 FvH4_1g15171 FvH4_1g15171 FvH4_1g15200 FvH4_1g15200 FvH4_1g15200 FvH4_1g15210 FvH4_1g15210 FvH4_1g15210 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15220 FvH4_1g15230 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15240 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15330 FvH4_1g15500 FvH4_1g15500 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_1g17470 FvH4_2g19760 FvH4_3g12820 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_4g31860 FvH4_6g18970 FvH4_6g42370 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g42380 FvH4_6g50100 FvH4_6g50100 FvH4_6g50110 FvH4_6g50130 FvH4_6g50140 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50310 FvH4_6g50330
malus_domestica MD00G1053700.v1.1 MD02G1164300.v1.1 MD02G1164400.v1.1 MD02G1164700.v1.1 MD02G1164800.v1.1 MD02G1165300.v1.1 MD02G1165400.v1.1 MD02G1165500.v1.1 MD02G1165600.v1.1 MD02G1165900.v1.1 MD02G1166000.v1.1 MD02G1166100.v1.1 MD02G1166300.v1.1 MD08G1084900.v1.1 MD15G1263100.v1.1 MD15G1263300.v1.1 MD15G1276900.v1.1 MD15G1277200.v1.1 MD15G1277400.v1.1 MD15G1277700.v1.1 MD15G1277800.v1.1 MD15G1278000.v1.1 MD15G1278100.v1.1 MD15G1278400.v1.1 MD15G1278600.v1.1
prunus_persica Prupe.7G138500_v2.0.a1 Prupe.7G138500_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138600_v2.0.a1 Prupe.7G138700_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138800_v2.0.a1 Prupe.7G138900_v2.0.a1 Prupe.7G139100_v2.0.a1 Prupe.7G139200_v2.0.a1 Prupe.7G139500_v2.0.a1 Prupe.7G139600_v2.0.a1 Prupe.7G139700_v2.0.a1 Prupe.7G139800_v2.0.a1
pyrus_communis pycom02g13150 pycom02g13160 pycom02g13190 pycom02g13200 pycom02g13220 pycom02g13230 pycom02g13250 pycom02g13260 pycom02g13270 pycom02g13300 pycom02g13310 pycom02g13330 pycom15g23980 pycom15g23990 pycom15g24030 pycom15g24040 pycom15g24050 pycom15g24070 pycom15g24090 pycom15g24160
rosa_chinensis RchiOBHm_Chr1g0326431 RchiOBHm_Chr1g0326451 RchiOBHm_Chr2g0104121 RchiOBHm_Chr2g0104151 RchiOBHm_Chr2g0104171 RchiOBHm_Chr2g0104181 RchiOBHm_Chr2g0104191 RchiOBHm_Chr2g0104201 RchiOBHm_Chr2g0104211 RchiOBHm_Chr2g0104241 RchiOBHm_Chr2g0104261 RchiOBHm_Chr2g0104281 RchiOBHm_Chr2g0104311 RchiOBHm_Chr2g0104331 RchiOBHm_Chr2g0104361 RchiOBHm_Chr2g0104381 RchiOBHm_Chr2g0104391 RchiOBHm_Chr2g0104431 RchiOBHm_Chr2g0104441 RchiOBHm_Chr2g0104541 RchiOBHm_Chr2g0104611 RchiOBHm_Chr2g0104741 RchiOBHm_Chr2g0104761 RchiOBHm_Chr2g0158291 RchiOBHm_Chr2g0170371 RchiOBHm_Chr2g0170631 RchiOBHm_Chr3g0473971 RchiOBHm_Chr3g0480491 RchiOBHm_Chr3g0480541 RchiOBHm_Chr3g0480561 RchiOBHm_Chr3g0485281 RchiOBHm_Chr3g0485291 RchiOBHm_Chr4g0411541 RchiOBHm_Chr6g0285471
rosa_laevigata RLG00000008347 RLG00000012637 RLG00000016961 RLG00000017293 RLG00000017305 RLG00000017308 RLG00000017312 RLG00000017314 RLG00000017317 RLG00000017318 RLG00000017319 RLG00000017321 RLG00000017322 RLG00000017323 RLG00000017324 RLG00000017325 RLG00000017327 RLG00000017328 RLG00000017329 RLG00000017330 RLG00000017334 RLG00000020833 RLG00000021073 RLG00000021950 RLG00000021971 RLG00000023154 RLG00000023157 RLG00000023467 RLG00000023468 RLG00000023525 RLG00000023963 RLG00000033265 RLG00000033267 RLG00000033268
rosa_multiflora Rmu_co8053082.1_g000001 Rmu_co8210358.1_g000001 Rmu_co8331661.1_g000001 Rmu_co8477427.1_g000002 Rmu_co8483217.1_g000001 Rmu_sc0000284.1_g000004 Rmu_sc0000676.1_g000017 Rmu_sc0000676.1_g000019 Rmu_sc0000676.1_g000021 Rmu_sc0002205.1_g000038 Rmu_sc0002205.1_g000041 Rmu_sc0002316.1_g000010 Rmu_sc0002316.1_g000012 Rmu_sc0002316.1_g000040 Rmu_sc0002316.1_g000071 Rmu_sc0002316.1_g000072 Rmu_sc0002316.1_g000095 Rmu_sc0002316.1_g000102 Rmu_sc0002414.1_g000018 Rmu_sc0002576.1_g000002 Rmu_sc0002576.1_g000003 Rmu_sc0002687.1_g000010 Rmu_sc0002687.1_g000017 Rmu_sc0003660.1_g000001 Rmu_sc0003787.1_g000014 Rmu_sc0003787.1_g000020 Rmu_sc0003787.1_g000024 Rmu_sc0003787.1_g000029 Rmu_sc0004059.1_g000026 Rmu_sc0005137.1_g000021 Rmu_sc0006550.1_g000001 Rmu_sc0006561.1_g000025 Rmu_sc0006561.1_g000033 Rmu_sc0007704.1_g000005 Rmu_sc0008904.1_g000005 Rmu_sc0010270.1_g000002 Rmu_sc0010307.1_g000001 Rmu_sc0011601.1_g000013 Rmu_sc0012694.1_g000005 Rmu_sc0013101.1_g000008 Rmu_sc0019029.1_g000001 Rmu_sc0019728.1_g000001 Rmu_sc0025829.1_g000001 Rmu_sc0025829.1_g000002 Rmu_ssc0000257.1_g000007 Rmu_ssc0000257.1_g000008
rosa_roxburghii Rroxscaffold_1G00021710 Rroxscaffold_1G00049350 Rroxscaffold_1G00049360 Rroxscaffold_2G00081160 Rroxscaffold_2G00081360 Rroxscaffold_2G00081390 Rroxscaffold_2G00091540 Rroxscaffold_2G00138790 Rroxscaffold_2G00138800 Rroxscaffold_2G00138920 Rroxscaffold_2G00139000 Rroxscaffold_2G00139010 Rroxscaffold_2G00139020 Rroxscaffold_2G00139030 Rroxscaffold_2G00139040 Rroxscaffold_2G00139050 Rroxscaffold_2G00139060 Rroxscaffold_2G00139070 Rroxscaffold_2G00139090 Rroxscaffold_2G00139100 Rroxscaffold_3G00257470 Rroxscaffold_4G00318040 Rroxscaffold_4G00323740 Rroxscaffold_4G00323750 Rroxscaffold_5G00356140 Rroxscaffold_6G00401280 Rroxscaffold_6G00401290 Rroxscaffold_7G00183120
rosa_rugosa Rorug01G0060500 Rorug01G0060900 Rorug02G0119500 Rorug02G0119600 Rorug02G0119700 Rorug02G0119700 Rorug02G0119700 Rorug02G0119800.1 Rorug02G0119900.1 Rorug02G0120000 Rorug02G0120100 Rorug02G0120200 Rorug02G0120300 Rorug02G0120400 Rorug02G0120500 Rorug02G0120700 Rorug02G0120700 Rorug02G0122300 Rorug02G0122300 Rorug02G0122400.1 Rorug02G0466700 Rorug02G0466700 Rorug02G0466800 Rorug02G0548600 Rorug02G0549900 Rorug02G0550000 Rorug03G0184200 Rorug04G0107900 Rorug05G0121500 Rorug06G0174800
rosa_samantha Rh1AG198400 Rh1CG074700 Rh1CG075000 Rh1CG183700 Rh2AG169700 Rh2AG169800 Rh2AG169900 Rh2AG170000 Rh2AG170300 Rh2AG170400 Rh2AG171000 Rh2AG171100 Rh2AG171600 Rh2AG172400 Rh2AG172500 Rh2AG532900 Rh2AG620000 Rh2AG622500 Rh2AG622800 Rh2AG623000 Rh2BG176200 Rh2BG176300 Rh2BG176400 Rh2BG176500 Rh2BG176600 Rh2BG176900 Rh2BG177000 Rh2BG177100 Rh2BG177200 Rh2BG177300 Rh2BG177600 Rh2BG177700 Rh2BG177900 Rh2BG178000 Rh2BG178200 Rh2BG178300 Rh2BG178500 Rh2BG179000 Rh2BG180000 Rh2BG180100 Rh2BG259200 Rh2BG546700 Rh2BG630800 Rh2BG633500 Rh2CG176500 Rh2CG177500 Rh2CG177700 Rh2DG174400 Rh2DG174600 Rh2DG174900 Rh2DG175100 Rh2DG175200 Rh2DG175300 Rh2DG175600 Rh2DG175700 Rh2DG175800 Rh2DG175900 Rh2DG176000 Rh2DG176300 Rh2DG176400 Rh2DG176500 Rh2DG176600 Rh2DG176900 Rh2DG177100 Rh2DG177200 Rh2DG177800 Rh2DG177900 Rh2DG178700 Rh2DG178800 Rh2DG555700 Rh2DG643700 Rh2DG646300 Rh3AG235600 Rh3AG235900 Rh3AG236200 Rh3AG266700 Rh3AG266900 Rh3BG216200 Rh3BG269100 Rh3CG212700 Rh3CG265800 Rh4AG168900 Rh4BG165500 Rh4CG180300 Rh5BG261500 Rh6AG286300 Rh6BG287500 Rh6CG288600 Rh7AG022600
rosa_wichuraiana Rw0G008240 Rw0G008250 Rw0G013190 Rw0G013200 Rw2G013230 Rw2G013240 Rw2G013270 Rw2G013280 Rw2G013290 Rw2G013300 Rw2G013330 Rw2G013340 Rw2G013350 Rw2G013360 Rw2G013370 Rw2G013380 Rw2G013410 Rw2G013570 Rw2G044120 Rw2G051370 Rw2G051590 Rw3G017160 Rw3G021150 Rw3G021160 Rw3G023730 Rw3G023740 Rw4G014030 Rw6G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3444, 3689
AatII GACGTC 1 cut(s) 2004
Acc65I GGTACC 1 cut(s) 1774
AccB1I GGYRCC 2 cut(s) 196, 1774
AccB7I CCANNNNNTGG 1 cut(s) 245
AccI GTMKAC 1 cut(s) 576
AccII CGCG 2 cut(s) 515, 2124
AccIII TCCGGA 1 cut(s) 2389
AciI CCGC 3 cut(s) 743, 858, 2171
AclI AACGTT 1 cut(s) 1158
AclWI GGATC 2 cut(s) 1644, 2567
AcoI YGGCCR 2 cut(s) 152, 2914
AcyI GRCGYC 1 cut(s) 2001
AfiI CCNNNNNNNGG 5 cut(s) 90, 245, 2164, 2737, 3778
AflII CTTAAG 2 cut(s) 1640, 1913
AjiI CACGTC 1 cut(s) 2818
AjnI CCWGG 7 cut(s) 138, 238, 318, 708, 1821, 2591, 3275
AjuI GAANNNNNNNTTGG 4 cut(s) 774, 806, 1955, 1987
Alw21I GWGCWC 5 cut(s) 335, 1344, 2550, 2676, 3622
Alw26I GTCTC 7 cut(s) 858, 1588, 1763, 2217, 2531, 2842, 2863
AlwI GGATC 2 cut(s) 1644, 2567
AlwNI CAGNNNCTG 2 cut(s) 617, 1868
Ama87I CYCGRG 1 cut(s) 1958
Aor13HI TCCGGA 1 cut(s) 2389
AoxI GGCC 3 cut(s) 152, 672, 2914
ApeKI GCWGC 9 cut(s) 94, 359, 617, 2135, 2645, 2648, 2727, 3306, 3520
Asp700I GAANNNNTTC 8 cut(s) 507, 1473, 2027, 2157, 2349, 2397, 3540, 3672
Asp718I GGTACC 1 cut(s) 1774
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 4 cut(s) 136, 1856, 2608, 3785
AsuHPI GGTGA 7 cut(s) 229, 488, 1103, 1738, 2281, 2312, 2581
AsuII TTCGAA 1 cut(s) 66
AvaI CYCGRG 1 cut(s) 1958
AvaII GGWCC 4 cut(s) 136, 1856, 2608, 3785
AxyI CCTNAGG 1 cut(s) 3773
BaeI ACNNNNGTAYC 4 cut(s) 39, 39, 72, 72
BalI TGGCCA 1 cut(s) 2916
BanI GGYRCC 2 cut(s) 196, 1774
BanII GRGCYC 3 cut(s) 335, 1344, 2676
BauI CACGAG 1 cut(s) 1934
BbsI GAAGAC 6 cut(s) 75, 603, 1560, 2160, 2184, 2634
Bbv12I GWGCWC 5 cut(s) 335, 1344, 2550, 2676, 3622
BbvCI CCTCAGC 2 cut(s) 978, 3497
BbvI GCAGC 9 cut(s) 81, 346, 604, 2122, 2632, 2635, 2739, 3318, 3507
BccI CCATC 8 cut(s) 179, 339, 746, 932, 2774, 2963, 2981, 3323
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 7 cut(s) 140, 240, 320, 710, 1823, 2593, 3277
BciVI GTATCC 2 cut(s) 2689, 2763
BclI TGATCA 1 cut(s) 1728
BcoDI GTCTC 7 cut(s) 858, 1588, 1763, 2217, 2531, 2842, 2863
BfmI CTRYAG 5 cut(s) 32, 760, 1309, 1603, 2136
BfrI CTTAAG 2 cut(s) 1640, 1913
BfuI GTATCC 2 cut(s) 2689, 2763
BglII AGATCT 3 cut(s) 164, 1212, 1481
BlpI GCTNAGC 1 cut(s) 2723
Bme1390I CCNGG 7 cut(s) 140, 240, 320, 710, 1823, 2593, 3277
Bme18I GGWCC 4 cut(s) 136, 1856, 2608, 3785
BmeT110I CYCGRG 1 cut(s) 1958
BmgBI CACGTC 1 cut(s) 2818
BmgT120I GGNCC 4 cut(s) 136, 1856, 2608, 3785
BmiI GGNNCC 6 cut(s) 198, 707, 1084, 1692, 1776, 3786
BmrFI CCNGG 7 cut(s) 140, 240, 320, 710, 1823, 2593, 3277
BmrI ACTGGG 3 cut(s) 605, 2049, 3179
BmsI GCATC 5 cut(s) 277, 523, 907, 1192, 1264
BmuI ACTGGG 3 cut(s) 605, 2049, 3179
BpiI GAAGAC 6 cut(s) 75, 603, 1560, 2160, 2184, 2634
BpmI CTGGAG 2 cut(s) 2535, 3110
Bpu10I CCTNAGC 4 cut(s) 978, 1448, 2682, 3497
Bpu1102I GCTNAGC 1 cut(s) 2723
Bpu14I TTCGAA 1 cut(s) 66
BpuEI CTTGAG 2 cut(s) 71, 3278
BsaBI GATNNNNATC 1 cut(s) 2082
BsaHI GRCGYC 1 cut(s) 2001
BsaI GGTCTC 1 cut(s) 2217
BsaJI CCNNGG 6 cut(s) 318, 319, 580, 675, 1770, 2611
BsaWI WCCGGW 1 cut(s) 2389
BsaXI ACNNNNNCTCC 6 cut(s) 180, 210, 1692, 1722, 2508, 2538
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 245, 2164, 2737, 3778
Bse1I ACTGG 9 cut(s) 611, 1122, 1844, 2055, 2202, 2835, 3174, 3669, 3788
Bse21I CCTNAGG 1 cut(s) 3773
Bse3DI GCAATG 4 cut(s) 297, 465, 1321, 2603
Bse8I GATNNNNATC 1 cut(s) 2082
BseAI TCCGGA 1 cut(s) 2389
BseBI CCWGG 7 cut(s) 140, 240, 320, 710, 1823, 2593, 3277
BseDI CCNNGG 6 cut(s) 318, 319, 580, 675, 1770, 2611
BseJI GATNNNNATC 1 cut(s) 2082
BseLI CCNNNNNNNGG 5 cut(s) 90, 245, 2164, 2737, 3778
BseMI GCAATG 4 cut(s) 297, 465, 1321, 2603
BseNI ACTGG 9 cut(s) 611, 1122, 1844, 2055, 2202, 2835, 3174, 3669, 3788
BseXI GCAGC 9 cut(s) 81, 346, 604, 2122, 2632, 2635, 2739, 3318, 3507
Bsh1236I CGCG 2 cut(s) 515, 2124
BshFI GGCC 3 cut(s) 154, 674, 2916
BshNI GGYRCC 2 cut(s) 196, 1774
BsiHKAI GWGCWC 5 cut(s) 335, 1344, 2550, 2676, 3622
BsiHKCI CYCGRG 1 cut(s) 1958
BsiSI CCGG 3 cut(s) 155, 2390, 2731
BslFI GGGAC 2 cut(s) 399, 3759
BslI CCNNNNNNNGG 5 cut(s) 90, 245, 2164, 2737, 3778
BsmAI GTCTC 7 cut(s) 858, 1588, 1763, 2217, 2531, 2842, 2863
BsmFI GGGAC 2 cut(s) 399, 3759
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 3 cut(s) 154, 674, 2916
Bso31I GGTCTC 1 cut(s) 2217
BsoBI CYCGRG 1 cut(s) 1958
Bsp119I TTCGAA 1 cut(s) 66
Bsp1286I GDGCHC 5 cut(s) 335, 1344, 2550, 2676, 3622
Bsp13I TCCGGA 1 cut(s) 2389
Bsp1407I TGTACA 2 cut(s) 22, 1457
Bsp1720I GCTNAGC 1 cut(s) 2723
Bsp68I TCGCGA 1 cut(s) 2124
BspACI CCGC 3 cut(s) 743, 858, 2171
BspANI GGCC 3 cut(s) 154, 674, 2916
BspEI TCCGGA 1 cut(s) 2389
BspFNI CGCG 2 cut(s) 515, 2124
BspLI GGNNCC 6 cut(s) 198, 707, 1084, 1692, 1776, 3786
BspMAI CTGCAG 1 cut(s) 2140
BspPI GGATC 2 cut(s) 1644, 2567
BspQI GCTCTTC 1 cut(s) 3316
BspT104I TTCGAA 1 cut(s) 66
BspT107I GGYRCC 2 cut(s) 196, 1774
BspTI CTTAAG 2 cut(s) 1640, 1913
BspTNI GGTCTC 1 cut(s) 2217
BsrDI GCAATG 4 cut(s) 297, 465, 1321, 2603
BsrGI TGTACA 2 cut(s) 22, 1457
BsrI ACTGG 9 cut(s) 611, 1122, 1844, 2055, 2202, 2835, 3174, 3669, 3788
BssECI CCNNGG 6 cut(s) 318, 319, 580, 675, 1770, 2611
BssNI GRCGYC 1 cut(s) 2001
BssSI CACGAG 1 cut(s) 1934
BssT1I CCWWGG 3 cut(s) 580, 675, 2611
Bst2BI CACGAG 1 cut(s) 1934
Bst2UI CCWGG 7 cut(s) 140, 240, 320, 710, 1823, 2593, 3277
BstACI GRCGYC 1 cut(s) 2001
BstAFI CTTAAG 2 cut(s) 1640, 1913
BstAPI GCANNNNNTGC 1 cut(s) 2818
BstAUI TGTACA 2 cut(s) 22, 1457
BstBI TTCGAA 1 cut(s) 66
BstC8I GCNNGC 5 cut(s) 696, 804, 1092, 2965, 3390
BstDSI CCRYGG 1 cut(s) 1770
BstEII GGTNACC 1 cut(s) 3451
BstENI CCTNNNNNAGG 2 cut(s) 2162, 3776
BstFNI CGCG 2 cut(s) 515, 2124
BstHHI GCGC 1 cut(s) 517
BstMAI GTCTC 7 cut(s) 858, 1588, 1763, 2217, 2531, 2842, 2863
BstMWI GCNNNNNNNGC 6 cut(s) 514, 1339, 1366, 1569, 2818, 3526
BstNI CCWGG 7 cut(s) 140, 240, 320, 710, 1823, 2593, 3277
BstNSI RCATGY 1 cut(s) 3332
BstPI GGTNACC 1 cut(s) 3451
BstSCI CCNGG 7 cut(s) 138, 238, 318, 708, 1821, 2591, 3275
BstSFI CTRYAG 5 cut(s) 32, 760, 1309, 1603, 2136
BstUI CGCG 2 cut(s) 515, 2124
BstV1I GCAGC 9 cut(s) 81, 346, 604, 2122, 2632, 2635, 2739, 3318, 3507
BstV2I GAAGAC 6 cut(s) 75, 603, 1560, 2160, 2184, 2634
BstX2I RGATCY 5 cut(s) 164, 1212, 1481, 1636, 2572
BstXI CCANNNNNNTGG 1 cut(s) 406
BstYI RGATCY 5 cut(s) 164, 1212, 1481, 1636, 2572
Bsu36I CCTNAGG 1 cut(s) 3773
BsuI GTATCC 2 cut(s) 2689, 2763
BsuRI GGCC 3 cut(s) 154, 674, 2916
BtgI CCRYGG 1 cut(s) 1770
BtgZI GCGATG 1 cut(s) 3735
BtrI CACGTC 1 cut(s) 2818
BtsIMutI CAGTG 7 cut(s) 376, 769, 1604, 2790, 3433, 3620, 3795
BtuMI TCGCGA 1 cut(s) 2124
Cac8I GCNNGC 5 cut(s) 696, 804, 1092, 2965, 3390
CaiI CAGNNNCTG 2 cut(s) 617, 1868
CfoI GCGC 1 cut(s) 517
Cfr13I GGNCC 4 cut(s) 136, 1856, 2608, 3785
CseI GACGC 3 cut(s) 3516, 3574, 3756
EaeI YGGCCR 2 cut(s) 152, 2914
Ecl136II GAGCTC 3 cut(s) 333, 1342, 2674
Eco130I CCWWGG 3 cut(s) 580, 675, 2611
Eco24I GRGCYC 3 cut(s) 335, 1344, 2676
Eco31I GGTCTC 1 cut(s) 2217
Eco47I GGWCC 4 cut(s) 136, 1856, 2608, 3785
Eco53kI GAGCTC 3 cut(s) 333, 1342, 2674
Eco81I CCTNAGG 1 cut(s) 3773
Eco88I CYCGRG 1 cut(s) 1958
Eco91I GGTNACC 1 cut(s) 3451
EcoICRI GAGCTC 3 cut(s) 333, 1342, 2674
EcoNI CCTNNNNNAGG 2 cut(s) 2162, 3776
EcoO65I GGTNACC 1 cut(s) 3451
EcoRI GAATTC 1 cut(s) 440
EcoRII CCWGG 7 cut(s) 138, 238, 318, 708, 1821, 2591, 3275
EcoT14I CCWWGG 3 cut(s) 580, 675, 2611
EcoT22I ATGCAT 2 cut(s) 1279, 3334
EcoT38I GRGCYC 3 cut(s) 335, 1344, 2676
ErhI CCWWGG 3 cut(s) 580, 675, 2611
FaqI GGGAC 2 cut(s) 399, 3759
FauI CCCGC 1 cut(s) 2164
FbaI TGATCA 1 cut(s) 1728
FblI GTMKAC 1 cut(s) 576
FriOI GRGCYC 3 cut(s) 335, 1344, 2676
GlaI GCGC 1 cut(s) 516
GsuI CTGGAG 2 cut(s) 2535, 3110
HaeIII GGCC 3 cut(s) 154, 674, 2916
HapII CCGG 3 cut(s) 155, 2390, 2731
HgaI GACGC 3 cut(s) 3516, 3574, 3756
HhaI GCGC 1 cut(s) 517
Hin1I GRCGYC 1 cut(s) 2001
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HindIII AAGCTT 6 cut(s) 692, 1242, 2566, 3297, 3638, 3671
HpaII CCGG 3 cut(s) 155, 2390, 2731
HphI GGTGA 7 cut(s) 229, 488, 1103, 1738, 2281, 2312, 2581
Hpy166II GTNNAC 5 cut(s) 577, 767, 1859, 2333, 2667
Hpy8I GTNNAC 5 cut(s) 577, 767, 1859, 2333, 2667
Hpy99I CGWCG 1 cut(s) 3287
HpyCH4IV ACGT 9 cut(s) 147, 1158, 1674, 1716, 1783, 1970, 2001, 2817, 3036
HpyF10VI GCNNNNNNNGC 6 cut(s) 514, 1339, 1366, 1569, 2818, 3526
HpySE526I ACGT 9 cut(s) 147, 1158, 1674, 1716, 1783, 1970, 2001, 2817, 3036
Hsp92I GRCGYC 1 cut(s) 2001
HspAI GCGC 1 cut(s) 515
Kpn2I TCCGGA 1 cut(s) 2389
KpnI GGTACC 1 cut(s) 1778
Ksp22I TGATCA 1 cut(s) 1728
LguI GCTCTTC 1 cut(s) 3316
LmnI GCTCC 4 cut(s) 705, 2516, 3517, 3617
Lsp1109I GCAGC 9 cut(s) 81, 346, 604, 2122, 2632, 2635, 2739, 3318, 3507
LweI GCATC 5 cut(s) 277, 523, 907, 1192, 1264
MaeII ACGT 9 cut(s) 147, 1158, 1674, 1716, 1783, 1970, 2001, 2817, 3036
MfeI CAATTG 5 cut(s) 1252, 2144, 2859, 3364, 3468
MflI RGATCY 5 cut(s) 164, 1212, 1481, 1636, 2572
MhlI GDGCHC 5 cut(s) 335, 1344, 2550, 2676, 3622
MlsI TGGCCA 1 cut(s) 2916
MluNI TGGCCA 1 cut(s) 2916
MlyI GAGTC 7 cut(s) 289, 1210, 1701, 1950, 2743, 3070, 3262
MmeI TCCRAC 4 cut(s) 255, 391, 1305, 1857
Mox20I TGGCCA 1 cut(s) 2916
Mph1103I ATGCAT 2 cut(s) 1279, 3334
MroI TCCGGA 1 cut(s) 2389
MroXI GAANNNNTTC 8 cut(s) 507, 1473, 2027, 2157, 2349, 2397, 3540, 3672
MscI TGGCCA 1 cut(s) 2916
MslI CAYNNNNRTG 2 cut(s) 404, 629
Msp20I TGGCCA 1 cut(s) 2916
MspA1I CMGCKG 2 cut(s) 802, 1790
MspCI CTTAAG 2 cut(s) 1640, 1913
MspI CCGG 3 cut(s) 155, 2390, 2731
MspR9I CCNGG 7 cut(s) 140, 240, 320, 710, 1823, 2593, 3277
MunI CAATTG 5 cut(s) 1252, 2144, 2859, 3364, 3468
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 7 cut(s) 140, 240, 320, 710, 1823, 2593, 3277
MvnI CGCG 2 cut(s) 515, 2124
MwoI GCNNNNNNNGC 6 cut(s) 514, 1339, 1366, 1569, 2818, 3526
NlaIV GGNNCC 6 cut(s) 198, 707, 1084, 1692, 1776, 3786
NmuCI GTSAC 4 cut(s) 217, 775, 2269, 2752
NruI TCGCGA 1 cut(s) 2124
NsiI ATGCAT 2 cut(s) 1279, 3334
NspI RCATGY 1 cut(s) 3332
NspV TTCGAA 1 cut(s) 66
PasI CCCWGGG 1 cut(s) 319
PciSI GCTCTTC 1 cut(s) 3316
PctI GAATGC 1 cut(s) 745
PdmI GAANNNNTTC 8 cut(s) 507, 1473, 2027, 2157, 2349, 2397, 3540, 3672
PflMI CCANNNNNTGG 1 cut(s) 245
PfoI TCCNGGA 2 cut(s) 138, 238
PleI GAGTC 7 cut(s) 289, 1209, 1701, 1950, 2742, 3069, 3261
PpsI GAGTC 7 cut(s) 289, 1209, 1701, 1950, 2742, 3069, 3261
PsiI TTATAA 2 cut(s) 3444, 3689
Psp124BI GAGCTC 3 cut(s) 335, 1344, 2676
Psp1406I AACGTT 1 cut(s) 1158
Psp6I CCWGG 7 cut(s) 138, 238, 318, 708, 1821, 2591, 3275
PspEI GGTNACC 1 cut(s) 3451
PspGI CCWGG 7 cut(s) 138, 238, 318, 708, 1821, 2591, 3275
PspN4I GGNNCC 6 cut(s) 198, 707, 1084, 1692, 1776, 3786
PspPI GGNCC 4 cut(s) 136, 1856, 2608, 3785
PsrI GAACNNNNNNTAC 4 cut(s) 1683, 1715, 2091, 2123
PstI CTGCAG 1 cut(s) 2140
PstNI CAGNNNCTG 2 cut(s) 617, 1868
PsuI RGATCY 5 cut(s) 164, 1212, 1481, 1636, 2572
PvuII CAGCTG 2 cut(s) 802, 1790
RruI TCGCGA 1 cut(s) 2124
RseI CAYNNNNRTG 2 cut(s) 404, 629
SacI GAGCTC 3 cut(s) 335, 1344, 2676
SapI GCTCTTC 1 cut(s) 3316
Sau96I GGNCC 4 cut(s) 136, 1856, 2608, 3785
SchI GAGTC 7 cut(s) 289, 1210, 1701, 1950, 2743, 3070, 3262
ScrFI CCNGG 7 cut(s) 140, 240, 320, 710, 1823, 2593, 3277
SduI GDGCHC 5 cut(s) 335, 1344, 2550, 2676, 3622
SfaNI GCATC 5 cut(s) 277, 523, 907, 1192, 1264
SfcI CTRYAG 5 cut(s) 32, 760, 1309, 1603, 2136
SfuI TTCGAA 1 cut(s) 66
SinI GGWCC 4 cut(s) 136, 1856, 2608, 3785
SmiMI CAYNNNNRTG 2 cut(s) 404, 629
SmlI CTYRAG 4 cut(s) 86, 1640, 1913, 3257
SmoI CTYRAG 4 cut(s) 86, 1640, 1913, 3257
SsiI CCGC 3 cut(s) 743, 858, 2171
SspI AATATT 3 cut(s) 1303, 2884, 3052
SstI GAGCTC 3 cut(s) 335, 1344, 2676
StyD4I CCNGG 7 cut(s) 138, 238, 318, 708, 1821, 2591, 3275
StyI CCWWGG 3 cut(s) 580, 675, 2611
TaiI ACGT 9 cut(s) 150, 1161, 1677, 1719, 1786, 1973, 2004, 2820, 3039
TaqI TCGA 6 cut(s) 5, 66, 343, 901, 3059, 3360
TatI WGTACW 3 cut(s) 22, 127, 1457
TauI GCSGC 1 cut(s) 861
TscAI CASTG 7 cut(s) 383, 769, 1604, 2797, 3433, 3627, 3795
TseFI GTSAC 4 cut(s) 217, 775, 2269, 2752
TseI GCWGC 9 cut(s) 94, 359, 617, 2135, 2645, 2648, 2727, 3306, 3520
Tsp45I GTSAC 4 cut(s) 217, 775, 2269, 2752
TspGWI ACGGA 4 cut(s) 65, 441, 1387, 3530
TspRI CASTG 7 cut(s) 383, 769, 1604, 2797, 3433, 3627, 3795
Van91I CCANNNNNTGG 1 cut(s) 245
Vha464I CTTAAG 2 cut(s) 1640, 1913
VpaK11BI GGWCC 4 cut(s) 136, 1856, 2608, 3785
XagI CCTNNNNNAGG 2 cut(s) 2162, 3776
XbaI TCTAGA 1 cut(s) 2161
XceI RCATGY 1 cut(s) 3332
XcmI CCANNNNNNNNNTGG 2 cut(s) 706, 1629
XmiI GTMKAC 1 cut(s) 576
XmnI GAANNNNTTC 8 cut(s) 507, 1473, 2027, 2157, 2349, 2397, 3540, 3672
ZraI GACGTC 1 cut(s) 2002
Zsp2I ATGCAT 2 cut(s) 1279, 3334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.