Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008633

Physical Location & Seq

Genomic Coordinates Reverse (-)

5099426 .. 5101880

Gene Structure 2455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCGTCCGCATTCTCTGCATTTAGGGTTTCGTTGTCCAGAATCAGTCCTTTCCGTGATACCCGGTTCTCTTATCCCGCCACGTTGGCTTTAGCTCATACCAAACGAATCATGTGCAACTCTTCGCATTCTGTATCTCCATCTCCTTCTCCCTCTGACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTACTTTTTCGTTAATGGAAACAAGTGAAAATGCAAGGTGGAGACCCATGTGCTTGTATTACACCCACGGAAAGTGTACAAAGATGGATGATCCTGCCCATTTGGAGATTTTTAACCACGATTGTTCAAAGGAACTTCGAGTGGCTGCTGCTGATCTTGAGAGAAAGAAGTCACAAGAATTCAATTTTTTCTTGGTTATTGACTTGGAAGGAAAAGTTGAGATTCTTGAGTTTCCTATTTTGATCGTAGATGCCAAAACCATGGAAGTCGTAGACTTATTCCACAGGTTTGTAAGACCCACCAAAATGAGCGAGCAAGCAATTAACAAATACATCGAAGGCAAGTATGGGGAACTCGGGGTTGATCGTGTGTGGCATGACACAGCTATTCCATTTAAGCAAGTTGTTGAGGAGTTTGAAGTTTGGTTAGCTGAGCATGACTTGTGGGATAAAGATACAGATTGGGGTCTGAACGATGCAGCTTTTGTAACCTGTGGAAACTGGGATATAAAGACAAAGATTCCTGAGCAATGCGTAGTTTCAAACATCAATCTTCCGCCATATTTTATGGAGTGGATCAATCTCAAAGACGTCTACTTGAATTTCTATGGCCGTGAGGCAAGAGGAATGGTGTCAATGATGAGGCAGTGTGGAATAAAACTCATGGGAAGCCACCATCTGGGCATTGATGACACAAAGAACATCACGAGGGTGGTGCAACGGATGCTCTCAGAAGGTGCAGTTCTCAAGCTCACAGCTCGAAGGAGCAAATCCAATATGAGAAACGTCGAGTTTCTCTTCAAGAACAGGATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1900368 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

337

Amino Acids

38.67

Weight (kDa)

7.64

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	75 - 243	5.9e-09	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15140 AT3G15140
fragaria_vesca	FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250
malus_domestica	MD11G1255900.v1.1
prunus_persica	Prupe.4G173900_v2.0.a1
pyrus_communis	pycom11g22620
rosa_chinensis	RchiOBHm_Chr5g0032321
rosa_laevigata	RLG00000033385
rosa_roxburghii	Rroxscaffold_1G00048100
rosa_rugosa	Rorug05G0130800 Rorug05G0130900
rosa_samantha	Rh5AG224300 Rh5BG225200 Rh5CG250700 Rh5DG229900
rosa_wichuraiana	Rw5G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	789
AccB7I	CCANNNNNTGG	1 cut(s)	874
AccI	GTMKAC	2 cut(s)	468, 789
AciI	CCGC	3 cut(s)	9, 78, 752
AclWI	GGATC	3 cut(s)	281, 779, 1013
AcoI	YGGCCR	1 cut(s)	805
AcsI	RAATTY	2 cut(s)	374, 796
AcyI	GRCGYC	2 cut(s)	5, 786
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	874
AgsI	TTSAA	6 cut(s)	324, 379, 614, 738, 796, 997
AleI	CACNNNNGTG	1 cut(s)	905
AluBI	AGCT	6 cut(s)	95, 581, 626, 677, 946, 953
AluI	AGCT	6 cut(s)	95, 581, 626, 677, 946, 953
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	3 cut(s)	281, 779, 1013
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	805
ApeKI	GCWGC	3 cut(s)	341, 344, 674
ApoI	RAATTY	2 cut(s)	374, 796
AsuC2I	CCSGG	1 cut(s)	64
AvaI	CYCGRG	1 cut(s)	551
BauI	CACGAG	1 cut(s)	901
BbvI	GCAGC	3 cut(s)	328, 331, 686
BccI	CCATC	3 cut(s)	148, 274, 879
BceAI	ACGGC	1 cut(s)	792
BcgI	CGANNNNNNTGC	4 cut(s)	96, 130, 892, 926
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	232
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	3 cut(s)	342, 345, 675
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	3 cut(s)	343, 346, 676
Bme1390I	CCNGG	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	551
BmrFI	CCNGG	1 cut(s)	64
BmrI	ACTGGG	1 cut(s)	706
BmsI	GCATC	3 cut(s)	436, 661, 909
BmuI	ACTGGG	1 cut(s)	706
Bpu10I	CCTNAGC	1 cut(s)	720
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	3 cut(s)	374, 443, 926
BpuMI	CCSGG	1 cut(s)	64
BsaHI	GRCGYC	2 cut(s)	5, 786
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	262, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	874
Bse1I	ACTGG	1 cut(s)	701
Bse3DI	GCAATG	1 cut(s)	731
BseDI	CCNNGG	2 cut(s)	262, 456
BseGI	GGATG	2 cut(s)	289, 924
BseLI	CCNNNNNNNGG	1 cut(s)	874
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	3 cut(s)	618, 711, 939
BseNI	ACTGG	1 cut(s)	701
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	328, 331, 686
BsgI	GTGCAG	1 cut(s)	954
BshFI	GGCC	1 cut(s)	807
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	874
BsmAI	GTCTC	1 cut(s)	232
BsmI	GAATGC	2 cut(s)	11, 127
BsnI	GGCC	1 cut(s)	807
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	551
Bsp1407I	TGTACA	1 cut(s)	272
Bsp143I	GATC	6 cut(s)	286, 349, 438, 559, 771, 1005
Bsp1720I	GCTNAGC	1 cut(s)	627
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	3 cut(s)	9, 78, 752
BspANI	GGCC	1 cut(s)	807
BspCNI	CTCAG	3 cut(s)	619, 712, 938
BspPI	GGATC	3 cut(s)	281, 779, 1013
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	731
BsrGI	TGTACA	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	701
BssECI	CCNNGG	2 cut(s)	262, 456
BssMI	GATC	6 cut(s)	286, 349, 438, 559, 771, 1005
BssNI	GRCGYC	2 cut(s)	5, 786
BssSI	CACGAG	1 cut(s)	901
BssT1I	CCWWGG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	901
Bst6I	CTCTTC	2 cut(s)	127, 998
BstACI	GRCGYC	2 cut(s)	5, 786
BstAPI	GCANNNNNTGC	2 cut(s)	17, 919
BstAUI	TGTACA	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	509, 513
BstDEI	CTNAG	3 cut(s)	627, 720, 925
BstDSI	CCRYGG	2 cut(s)	262, 456
BstF5I	GGATG	2 cut(s)	289, 924
BstKTI	GATC	6 cut(s)	289, 352, 441, 562, 774, 1008
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	6 cut(s)	286, 349, 438, 559, 771, 1005
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 86, 919
BstSCI	CCNGG	1 cut(s)	62
BstV1I	GCAGC	3 cut(s)	328, 331, 686
BstXI	CCANNNNNNTGG	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	807
BtgI	CCRYGG	2 cut(s)	262, 456
BtsCI	GGATG	2 cut(s)	289, 924
BtsI	GCAGTG	1 cut(s)	848
BtsIMutI	CAGTG	1 cut(s)	848
Cac8I	GCNNGC	2 cut(s)	509, 513
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	6 cut(s)	112, 244, 457, 572, 632, 859
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	3 cut(s)	627, 720, 925
DpnI	GATC	6 cut(s)	288, 351, 440, 561, 773, 1007
DpnII	GATC	6 cut(s)	286, 349, 438, 559, 771, 1005
EaeI	YGGCCR	1 cut(s)	805
Eam1104I	CTCTTC	2 cut(s)	127, 998
EarI	CTCTTC	2 cut(s)	127, 998
EciI	GGCGGA	1 cut(s)	741
Eco130I	CCWWGG	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	6 cut(s)	115, 247, 460, 575, 635, 862
FatI	CATG	6 cut(s)	111, 243, 456, 571, 631, 858
FauI	CCCGC	1 cut(s)	85
FblI	GTMKAC	2 cut(s)	468, 789
Fnu4HI	GCNGC	3 cut(s)	342, 345, 675
FokI	GGATG	2 cut(s)	296, 931
Fsp4HI	GCNGC	3 cut(s)	342, 345, 675
GluI	GCNGC	3 cut(s)	342, 345, 675
HaeIII	GGCC	1 cut(s)	807
HapII	CCGG	1 cut(s)	64
Hin1I	GRCGYC	2 cut(s)	5, 786
Hin1II	CATG	6 cut(s)	115, 247, 460, 575, 635, 862
HinfI	GANTC	4 cut(s)	42, 108, 418, 715
HpaII	CCGG	1 cut(s)	64
Hpy166II	GTNNAC	3 cut(s)	273, 469, 790
Hpy188I	TCNGA	3 cut(s)	157, 666, 928
Hpy188III	TCNNGA	6 cut(s)	39, 353, 422, 719, 901, 997
Hpy8I	GTNNAC	3 cut(s)	273, 469, 790
Hpy99I	CGWCG	1 cut(s)	986
HpyAV	CCTTC	6 cut(s)	156, 204, 398, 527, 923, 951
HpyCH4IV	ACGT	3 cut(s)	83, 786, 981
HpyCH4V	TGCA	6 cut(s)	20, 117, 230, 674, 913, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 86, 919
HpyF3I	CTNAG	3 cut(s)	627, 720, 925
HpySE526I	ACGT	3 cut(s)	83, 786, 981
Hsp92I	GRCGYC	2 cut(s)	5, 786
Hsp92II	CATG	6 cut(s)	115, 247, 460, 575, 635, 862
Kzo9I	GATC	6 cut(s)	286, 349, 438, 559, 771, 1005
LmnI	GCTCC	1 cut(s)	960
LpnPI	CCDG	9 cut(s)	52, 77, 303, 466, 682, 700, 732, 860, 988
Lsp1109I	GCAGC	3 cut(s)	328, 331, 686
LweI	GCATC	3 cut(s)	436, 661, 909
MaeII	ACGT	3 cut(s)	83, 786, 981
MaeIII	GTNAC	2 cut(s)	366, 682
MalI	GATC	6 cut(s)	288, 351, 440, 561, 773, 1007
MboI	GATC	6 cut(s)	286, 349, 438, 559, 771, 1005
MluCI	AATT	4 cut(s)	374, 379, 516, 796
MnlI	CCTC	6 cut(s)	163, 598, 805, 812, 831, 897
MseI	TTAA	4 cut(s)	209, 309, 519, 591
MslI	CAYNNNNRTG	2 cut(s)	500, 905
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	2 cut(s)	11, 127
MwoI	GCNNNNNNNGC	3 cut(s)	17, 86, 919
NciI	CCSGG	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	6 cut(s)	286, 349, 438, 559, 771, 1005
NlaIII	CATG	6 cut(s)	115, 247, 460, 575, 635, 862
NmuCI	GTSAC	1 cut(s)	366
OliI	CACNNNNGTG	1 cut(s)	905
PctI	GAATGC	2 cut(s)	11, 127
PfeI	GAWTC	4 cut(s)	42, 108, 418, 715
PflMI	CCANNNNNTGG	1 cut(s)	874
PkrI	GCNGC	3 cut(s)	343, 346, 676
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	2 cut(s)	500, 905
SaqAI	TTAA	4 cut(s)	209, 309, 519, 591
SatI	GCNGC	3 cut(s)	342, 345, 675
Sau3AI	GATC	6 cut(s)	286, 349, 438, 559, 771, 1005
ScrFI	CCNGG	1 cut(s)	64
SfaNI	GCATC	3 cut(s)	436, 661, 909
SmiMI	CAYNNNNRTG	2 cut(s)	500, 905
SmlI	CTYRAG	3 cut(s)	353, 422, 941
SmoI	CTYRAG	3 cut(s)	353, 422, 941
Sse9I	AATT	4 cut(s)	374, 379, 516, 796
SsiI	CCGC	3 cut(s)	9, 78, 752
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	456
TaiI	ACGT	3 cut(s)	86, 789, 984
TaqI	TCGA	4 cut(s)	334, 531, 955, 984
TasI	AATT	4 cut(s)	374, 379, 516, 796
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	4 cut(s)	42, 108, 418, 715
Tru1I	TTAA	4 cut(s)	209, 309, 519, 591
Tru9I	TTAA	4 cut(s)	209, 309, 519, 591
TscAI	CASTG	1 cut(s)	848
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	3 cut(s)	341, 344, 674
Tsp45I	GTSAC	1 cut(s)	366
TspGWI	ACGGA	3 cut(s)	44, 279, 931
TspRI	CASTG	1 cut(s)	848
Van91I	CCANNNNNTGG	1 cut(s)	874
XapI	RAATTY	2 cut(s)	374, 796
XmiI	GTMKAC	2 cut(s)	468, 789
ZraI	GACGTC	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.