Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008633

Physical Location & Seq

Genomic Coordinates Reverse (-)

11630642 .. 11632772

Gene Structure 2131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0130900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTGGCAGATGCAGCTGAAGATAGGGAAGATGGCGATGCAATGGAACCCTTATGGTGGAACAATGAGCGAGATTTCCGAGTCGGTGACTCCATTCCCACATAAAGCAGGAAACTTGTTTATGATTCATTACGTCACTGTCTGGGCGAACGAAACGGACACAGAGAAATACATTGACTTGTTGAGGAAGTTTTATGAAGCAATGACTCCATTTGTGTCCAAGGACCCTAGAGAGGCCTACCAGAACTACAGGGATCTTGACATCGGTGCTCCAGAACCAGACTTCCTTTCAAGCTGCTTGGGTTTATGGGAAAAAGTAGGCCTCGGCTTAAGAATCAGTCTGTGCAGCGCAAAATCACTCGGCCATTCTTGGGCTTTAGACACAATCTGCGTGCTGACCATGAACATCTGCCTTTCCAAATTAAGAGGTTCCCAAGGTGGCTTGGGGTTGAAGCAGCTTGTGCTTCTTAATCGTTCTCTTTTGTTGAAGCGTTGTTGGGAGATCTATTCTTTTCCATCAGAAGGTTGTTCGTTTATTCGGAATAGATTTTCTCAACGTCGCTCTTATGCCTCTTCCTCTATATGGCTGGGAGTTCGTCCTTTTTGGGGTGTTGTCAAAGAAAATTCTCAATGGTTGATTGGTTCAGGAGGCAAGATTTCTTTTTGGCATGATAATTTTATGGGGAGGCCTATTATTGATTACTTTGGTGCTCATGTTGACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1900368 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

241

Amino Acids

27.54

Weight (kDa)

8.86

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15140 AT3G15140
fragaria_vesca	FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250
malus_domestica	MD11G1255900.v1.1
prunus_persica	Prupe.4G173900_v2.0.a1
pyrus_communis	pycom11g22620
rosa_chinensis	RchiOBHm_Chr5g0032321
rosa_laevigata	RLG00000033385
rosa_roxburghii	Rroxscaffold_1G00048100
rosa_rugosa	Rorug05G0130800 Rorug05G0130900
rosa_samantha	Rh5AG224300 Rh5BG225200 Rh5CG250700 Rh5DG229900
rosa_wichuraiana	Rw5G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	1 cut(s)	38
AfiI	CCNNNNNNNGG	6 cut(s)	56, 232, 370, 521, 582, 605
AflII	CTTAAG	1 cut(s)	328
AgsI	TTSAA	3 cut(s)	291, 451, 487
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AluBI	AGCT	3 cut(s)	16, 294, 457
AluI	AGCT	3 cut(s)	16, 294, 457
Alw21I	GWGCWC	2 cut(s)	271, 712
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	4 cut(s)	234, 319, 361, 686
ApeKI	GCWGC	4 cut(s)	13, 294, 345, 454
ApoI	RAATTY	1 cut(s)	622
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	223
Bbv12I	GWGCWC	2 cut(s)	271, 712
BbvI	GCAGC	4 cut(s)	25, 281, 357, 466
BccI	CCATC	2 cut(s)	25, 523
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	247
BfrI	CTTAAG	1 cut(s)	328
BglII	AGATCT	1 cut(s)	501
BisI	GCNGC	4 cut(s)	14, 295, 346, 455
BlsI	GCNGC	4 cut(s)	15, 296, 347, 456
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	3 cut(s)	47, 225, 430
BmsI	GCATC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	219, 322, 433
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 232, 370, 521, 582, 605
Bse3DI	GCAATG	2 cut(s)	47, 207
BseDI	CCNNGG	3 cut(s)	219, 322, 433
BseLI	CCNNNNNNNGG	6 cut(s)	56, 232, 370, 521, 582, 605
BseMI	GCAATG	2 cut(s)	47, 207
BseXI	GCAGC	4 cut(s)	25, 281, 357, 466
BseYI	CCCAGC	1 cut(s)	586
BsgI	GTGCAG	1 cut(s)	364
BshFI	GGCC	4 cut(s)	236, 321, 363, 688
BsiHKAI	GWGCWC	2 cut(s)	271, 712
BslI	CCNNNNNNNGG	6 cut(s)	56, 232, 370, 521, 582, 605
BsnI	GGCC	4 cut(s)	236, 321, 363, 688
Bsp1286I	GDGCHC	2 cut(s)	271, 712
Bsp143I	GATC	2 cut(s)	253, 501
BspANI	GGCC	4 cut(s)	236, 321, 363, 688
BspLI	GGNNCC	3 cut(s)	47, 225, 430
BspPI	GGATC	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	328
BsrDI	GCAATG	2 cut(s)	47, 207
BssECI	CCNNGG	3 cut(s)	219, 322, 433
BssMI	GATC	2 cut(s)	253, 501
BssT1I	CCWWGG	2 cut(s)	219, 433
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	577
BstAFI	CTTAAG	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	2 cut(s)	256, 504
BstMBI	GATC	2 cut(s)	253, 501
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 460
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	4 cut(s)	25, 281, 357, 466
BstX2I	RGATCY	2 cut(s)	253, 501
BstYI	RGATCY	2 cut(s)	253, 501
BsuRI	GGCC	4 cut(s)	236, 321, 363, 688
BtgZI	GCGATG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	392
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	223
CviAII	CATG	3 cut(s)	400, 668, 713
DpnI	GATC	2 cut(s)	255, 503
DpnII	GATC	2 cut(s)	253, 501
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
Eco130I	CCWWGG	2 cut(s)	219, 433
Eco147I	AGGCCT	3 cut(s)	236, 321, 688
Eco47I	GGWCC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	223
EcoT14I	CCWWGG	2 cut(s)	219, 433
ErhI	CCWWGG	2 cut(s)	219, 433
FaeI	CATG	3 cut(s)	403, 671, 716
FatI	CATG	3 cut(s)	399, 667, 712
Fnu4HI	GCNGC	4 cut(s)	14, 295, 346, 455
Fsp4HI	GCNGC	4 cut(s)	14, 295, 346, 455
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	4 cut(s)	14, 295, 346, 455
GsaI	CCCAGC	1 cut(s)	590
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	4 cut(s)	236, 321, 363, 688
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	3 cut(s)	403, 671, 716
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	5 cut(s)	80, 88, 124, 205, 333
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	3 cut(s)	79, 520, 540
Hpy188III	TCNNGA	3 cut(s)	257, 272, 645
Hpy8I	GTNNAC	1 cut(s)	718
Hpy99I	CGWCG	1 cut(s)	561
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	132, 556
HpyCH4V	TGCA	3 cut(s)	13, 40, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 460
HpySE526I	ACGT	2 cut(s)	132, 556
Hsp92II	CATG	3 cut(s)	403, 671, 716
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	253, 501
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	8 cut(s)	93, 127, 235, 254, 285, 291, 572, 630
Lsp1109I	GCAGC	4 cut(s)	25, 281, 357, 466
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	2 cut(s)	132, 556
MaeIII	GTNAC	2 cut(s)	85, 133
MalI	GATC	2 cut(s)	255, 503
MboI	GATC	2 cut(s)	253, 501
MboII	GAAGA	3 cut(s)	31, 40, 564
MflI	RGATCY	2 cut(s)	253, 501
MhlI	GDGCHC	2 cut(s)	271, 712
MluCI	AATT	3 cut(s)	419, 622, 673
MlyI	GAGTC	3 cut(s)	82, 89, 199
MnlI	CCTC	8 cut(s)	177, 226, 332, 419, 580, 586, 641, 678
MseI	TTAA	3 cut(s)	329, 422, 468
MspA1I	CMGCKG	1 cut(s)	16
MspCI	CTTAAG	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	13, 460
NdeII	GATC	2 cut(s)	253, 501
NlaIII	CATG	3 cut(s)	403, 671, 716
NlaIV	GGNNCC	3 cut(s)	47, 225, 430
NmeAIII	GCCGAG	2 cut(s)	303, 339
NmuCI	GTSAC	2 cut(s)	85, 133
PceI	AGGCCT	3 cut(s)	236, 321, 688
PfeI	GAWTC	2 cut(s)	124, 333
PkrI	GCNGC	4 cut(s)	15, 296, 347, 456
PleI	GAGTC	3 cut(s)	82, 88, 199
PpsI	GAGTC	3 cut(s)	82, 88, 199
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	586
PspN4I	GGNNCC	3 cut(s)	47, 225, 430
PspPI	GGNCC	1 cut(s)	223
PspPPI	RGGWCCY	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	253, 501
PvuII	CAGCTG	1 cut(s)	16
SaqAI	TTAA	3 cut(s)	329, 422, 468
SatI	GCNGC	4 cut(s)	14, 295, 346, 455
Sau3AI	GATC	2 cut(s)	253, 501
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	3 cut(s)	82, 89, 199
SduI	GDGCHC	2 cut(s)	271, 712
SetI	ASST	9 cut(s)	18, 135, 296, 430, 439, 459, 526, 559, 723
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	3 cut(s)	419, 622, 673
SseBI	AGGCCT	3 cut(s)	236, 321, 688
SspMI	CTAG	1 cut(s)	228
StuI	AGGCCT	3 cut(s)	236, 321, 688
StyI	CCWWGG	2 cut(s)	219, 433
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	135, 559
TasI	AATT	3 cut(s)	419, 622, 673
TfiI	GAWTC	2 cut(s)	124, 333
Tru1I	TTAA	3 cut(s)	329, 422, 468
Tru9I	TTAA	3 cut(s)	329, 422, 468
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	85, 133
TseI	GCWGC	4 cut(s)	13, 294, 345, 454
Tsp45I	GTSAC	2 cut(s)	85, 133
TspDTI	ATGAA	3 cut(s)	116, 210, 416
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	142
Vha464I	CTTAAG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	622
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.