Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008633

Physical Location & Seq

Genomic Coordinates Reverse (-)

26159919 .. 26164850

Gene Structure 4932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG225200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCATTCCCAAGAGCCATAGTGACTCGGCCTCTGCTTCCGCTACTCTTCTCTACCACTCTTACTAAACCCTTCATCAAAACCTCTCGCCCACTCCCTTCAATGCGTCCCTTCACCGCCTTTGCCTCCCTCCCTGCTTCCCAACAAGTCGGCGAGCCGTCCACTCCGGCATTCCCAGCTCCGGAAAGGAGCGGCGAGAGGTGGAAGCCCATGTGCTTGTACTACACACAAGGGAAATGCACCATGATGGAGGATCCTGCCCACATGGAGAAGTTCAATCATGATTGCTCCAGAGATCTTCAAGTGAAAAATTCCATGTCAAACCTCATTTGCTCTCAGCACTTGGATTATTTTCTTGTGCTTGATCTGGAGGGAAAAATTGAAATTCTTGAGTTTCCAGTTCTAATCATTGATGCAAAAACCATGAATGTCGTTGATTTTTTTCACAGGTTTGTAAGGCCAACGGAGATGAGCGAGAAAAGGATAAATGAATATATTGAAGGAAAGTATGGCAAATTTGGAGTTGACCGTGTTTGGCATGACACAGCTATACCATTTAAGAATGTTCTTCAACAATTTGAAGAATGGTTAACTCAGCATCAACTGTGGAGAGAAGAGGTGGGCGGGTGTCTTAATCAAGCAGCATTCGTAACTTGTGGAAACTGGGATTTGAAAACAAAAGTTCCTGAACAATGCAAAGTGGCAAAGGTGAAGCTTCCGTCATATTTTATGGAATGGATCAATCTCAAAGATGTCTATCTAAATTTTTACAAGAGAAGGGCCACAGGAATGATGACAATGATGAAGGAACTTCACATGCCATTGTTGGGAAGTCACCATCTTGGATTTGATGACTCAAAGAACATAGCAAGGGTGTTGCAACACATGCTTGCTGATGGTGCAATACTGCAGATTACAGCTAGGAGGGATCATAATTCTCCTGAGAAGGTTGAATTTCTATTCAAGAACAGAATAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1900368 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

326

Amino Acids

37.91

Weight (kDa)

8.86

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	122 - 293	1.2e-09	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15140 AT3G15140
fragaria_vesca	FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250
malus_domestica	MD11G1255900.v1.1
prunus_persica	Prupe.4G173900_v2.0.a1
pyrus_communis	pycom11g22620
rosa_chinensis	RchiOBHm_Chr5g0032321
rosa_laevigata	RLG00000033385
rosa_roxburghii	Rroxscaffold_1G00048100
rosa_rugosa	Rorug05G0130800 Rorug05G0130900
rosa_samantha	Rh5AG224300 Rh5BG225200 Rh5CG250700 Rh5DG229900
rosa_wichuraiana	Rw5G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	192
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	4 cut(s)	41, 117, 192, 624
AclWI	GGATC	4 cut(s)	248, 261, 746, 936
AcsI	RAATTY	5 cut(s)	310, 384, 515, 763, 953
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	181, 827
AluBI	AGCT	4 cut(s)	179, 548, 715, 920
AluI	AGCT	4 cut(s)	179, 548, 715, 920
AlwI	GGATC	4 cut(s)	248, 261, 746, 936
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	3 cut(s)	29, 458, 780
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	5 cut(s)	310, 384, 515, 763, 953
AspS9I	GGNCC	1 cut(s)	780
AsuHPI	GGTGA	3 cut(s)	106, 721, 827
BamHI	GGATCC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	653
BccI	CCATC	3 cut(s)	241, 846, 890
BceAI	ACGGC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	921
BfmI	CTRYAG	1 cut(s)	908
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	2 cut(s)	193, 642
BlsI	GCNGC	2 cut(s)	194, 643
BmgT120I	GGNCC	1 cut(s)	780
BmiI	GGNNCC	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	2 cut(s)	403, 607
BmuI	ACTGGG	1 cut(s)	673
BpmI	CTGGAG	2 cut(s)	274, 389
BpuEI	CTTGAG	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	756
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 827
Bse1I	ACTGG	2 cut(s)	398, 668
Bse8I	GATNNNNATC	1 cut(s)	756
BseAI	TCCGGA	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	2 cut(s)	181, 827
BseMII	CTCAG	3 cut(s)	350, 608, 933
BseNI	ACTGG	2 cut(s)	398, 668
BseXI	GCAGC	1 cut(s)	653
BseYI	CCCAGC	1 cut(s)	175
BshFI	GGCC	3 cut(s)	31, 460, 782
BsiSI	CCGG	2 cut(s)	167, 182
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	181, 827
BsmFI	GGGAC	1 cut(s)	93
BsmI	GAATGC	2 cut(s)	170, 644
BsnI	GGCC	3 cut(s)	31, 460, 782
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	253, 295, 364, 738, 928
BspACI	CCGC	4 cut(s)	41, 117, 192, 624
BspANI	GGCC	3 cut(s)	31, 460, 782
BspCNI	CTCAG	3 cut(s)	349, 607, 934
BspEI	TCCGGA	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	255
BspMAI	CTGCAG	1 cut(s)	912
BspPI	GGATC	4 cut(s)	248, 261, 746, 936
BsrBI	CCGCTC	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	398, 668
BssMI	GATC	5 cut(s)	253, 295, 364, 738, 928
Bst4CI	ACNGT	2 cut(s)	530, 606
Bst6I	CTCTTC	2 cut(s)	53, 609
BstAPI	GCANNNNNTGC	1 cut(s)	886
BstC8I	GCNNGC	2 cut(s)	155, 891
BstDEI	CTNAG	3 cut(s)	336, 594, 942
BstKTI	GATC	5 cut(s)	256, 298, 367, 741, 931
BstMBI	GATC	5 cut(s)	253, 295, 364, 738, 928
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 886, 899
BstNSI	RCATGY	2 cut(s)	820, 889
BstSFI	CTRYAG	1 cut(s)	908
BstV1I	GCAGC	1 cut(s)	653
BstX2I	RGATCY	2 cut(s)	253, 295
BstYI	RGATCY	2 cut(s)	253, 295
BsuRI	GGCC	3 cut(s)	31, 460, 782
Cac8I	GCNNGC	2 cut(s)	155, 891
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	780
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	9 cut(s)	211, 244, 265, 281, 316, 424, 539, 817, 886
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	336, 594, 942
DpnI	GATC	5 cut(s)	255, 297, 366, 740, 930
DpnII	GATC	5 cut(s)	253, 295, 364, 738, 928
Eam1104I	CTCTTC	2 cut(s)	53, 609
EarI	CTCTTC	2 cut(s)	53, 609
FaeI	CATG	9 cut(s)	214, 247, 268, 284, 319, 427, 542, 820, 889
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	9 cut(s)	210, 243, 264, 280, 315, 423, 538, 816, 885
FauI	CCCGC	1 cut(s)	617
Fnu4HI	GCNGC	2 cut(s)	193, 642
Fsp4HI	GCNGC	2 cut(s)	193, 642
FspBI	CTAG	1 cut(s)	921
GluI	GCNGC	2 cut(s)	193, 642
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	2 cut(s)	274, 389
HaeIII	GGCC	3 cut(s)	31, 460, 782
HapII	CCGG	2 cut(s)	167, 182
HgaI	GACGC	1 cut(s)	95
Hin1II	CATG	9 cut(s)	214, 247, 268, 284, 319, 427, 542, 820, 889
HincII	GTYRAC	2 cut(s)	526, 591
HindII	GTYRAC	2 cut(s)	526, 591
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	2 cut(s)	25, 854
HpaI	GTTAAC	1 cut(s)	591
HpaII	CCGG	2 cut(s)	167, 182
HphI	GGTGA	3 cut(s)	106, 721, 827
Hpy166II	GTNNAC	3 cut(s)	162, 526, 591
Hpy188III	TCNNGA	8 cut(s)	182, 281, 291, 368, 389, 686, 941, 964
Hpy8I	GTNNAC	3 cut(s)	162, 526, 591
HpyAV	CCTTC	7 cut(s)	82, 108, 121, 494, 771, 799, 940
HpyCH4III	ACNGT	2 cut(s)	530, 606
HpyCH4V	TGCA	6 cut(s)	240, 416, 696, 880, 902, 910
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 886, 899
HpyF3I	CTNAG	3 cut(s)	336, 594, 942
Hsp92II	CATG	9 cut(s)	214, 247, 268, 284, 319, 427, 542, 820, 889
Kpn2I	TCCGGA	1 cut(s)	181
KspAI	GTTAAC	1 cut(s)	591
Kzo9I	GATC	5 cut(s)	253, 295, 364, 738, 928
LmnI	GCTCC	3 cut(s)	184, 189, 293
Lsp1109I	GCAGC	1 cut(s)	653
LweI	GCATC	2 cut(s)	403, 607
MaeI	CTAG	1 cut(s)	921
MaeIII	GTNAC	3 cut(s)	22, 649, 833
MalI	GATC	5 cut(s)	255, 297, 366, 740, 930
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	5 cut(s)	253, 295, 364, 738, 928
MboII	GAAGA	5 cut(s)	40, 290, 560, 593, 626
MflI	RGATCY	2 cut(s)	253, 295
MluCI	AATT	8 cut(s)	310, 378, 384, 515, 575, 763, 934, 953
MlyI	GAGTC	2 cut(s)	19, 848
MroI	TCCGGA	1 cut(s)	181
MseI	TTAA	3 cut(s)	558, 590, 633
MslI	CAYNNNNRTG	2 cut(s)	245, 788
MspI	CCGG	2 cut(s)	167, 182
Mva1269I	GAATGC	2 cut(s)	170, 644
MwoI	GCNNNNNNNGC	3 cut(s)	176, 886, 899
NdeII	GATC	5 cut(s)	253, 295, 364, 738, 928
NlaIII	CATG	9 cut(s)	214, 247, 268, 284, 319, 427, 542, 820, 889
NlaIV	GGNNCC	1 cut(s)	255
NmeAIII	GCCGAG	1 cut(s)	7
NmuCI	GTSAC	2 cut(s)	22, 833
NspI	RCATGY	2 cut(s)	820, 889
PagI	TCATGA	1 cut(s)	280
PctI	GAATGC	2 cut(s)	170, 644
PkrI	GCNGC	2 cut(s)	194, 643
PleI	GAGTC	2 cut(s)	19, 848
PpsI	GAGTC	2 cut(s)	19, 848
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	780
PstI	CTGCAG	1 cut(s)	912
PsuI	RGATCY	2 cut(s)	253, 295
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	245, 788
SaqAI	TTAA	3 cut(s)	558, 590, 633
SatI	GCNGC	2 cut(s)	193, 642
Sau3AI	GATC	5 cut(s)	253, 295, 364, 738, 928
Sau96I	GGNCC	1 cut(s)	780
SchI	GAGTC	2 cut(s)	19, 848
SfaNI	GCATC	2 cut(s)	403, 607
SfcI	CTRYAG	1 cut(s)	908
SmiMI	CAYNNNNRTG	2 cut(s)	245, 788
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	8 cut(s)	310, 378, 384, 515, 575, 763, 934, 953
SsiI	CCGC	4 cut(s)	41, 117, 192, 624
SspMI	CTAG	1 cut(s)	921
TaaI	ACNGT	2 cut(s)	530, 606
TasI	AATT	8 cut(s)	310, 378, 384, 515, 575, 763, 934, 953
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	195
Tru1I	TTAA	3 cut(s)	558, 590, 633
Tru9I	TTAA	3 cut(s)	558, 590, 633
TseFI	GTSAC	2 cut(s)	22, 833
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	2 cut(s)	22, 833
TspDTI	ATGAA	4 cut(s)	64, 440, 504, 818
TspGWI	ACGGA	2 cut(s)	479, 708
XapI	RAATTY	5 cut(s)	310, 384, 515, 763, 953
XceI	RCATGY	2 cut(s)	820, 889
XspI	CTAG	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.