Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008633

Physical Location & Seq

Genomic Coordinates Reverse (-)

12436610 .. 12441327

Gene Structure 4718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19250.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCATTCCCAAGAGCCGTAGTGACAGCTCGCCCTTTGCTCCCTTTACTCTTCTCAACCACTCTTACTAGACCCTTGATCAAAACCTCTCGCCCACTCCGCCCAATGCGTCCCTTCACCGCCTTCGCCTCTCTCCCTTCTTCCCAAGAACTCGGCGAGCCGTCCGCTCCGGCATTCCCGCCTCCGAGAAGGACCGGCGAGCGGTGGAGGCCCATGTGCTTGTACTACACGCAAGGGAAGTGCACCATGATGGAGGATCCTGCCCACATGGAGAAGTTCAATCATGATTGTTCCAGAGATCTTCAAGTGACTACTTCCATGTTGAATCGCATTTGCTCTCAGCACTTAGATTATTTTCTTGTGCTTGATCTGGAGGGAAAAATTGAAATTCTTGAGTTTCCGGTTTTAATCATTGATGCAAAAACCTTGAATGTTGTGGATTTCTTTCACAGGTTTGTGAGGCCAACGGAGATGAGCGAGAAAAGGATAAATGAATATATCGAAGGGAAGTATGGTAAATTTGGAGTTGACCGTGTTTGGCATGACACAGCTATACCATTTAAGGATGTTCTTCAACAATTTGAAGAATGGTTAACTCAGCATCAACTGTGGGCAGAAGAGGTGGGCGGGTGTCTTAATCAAGCAGCATTTGTAACTTGTGGAAACTGGGATATAAAAACAAAAATTCCTGAACAATGCAAAGTGGCAAAGGTGAAGCTTCCGTCATATTTTATGGAATGGATCAATCTTAAAGATGTCTATCTAAATTTTTACAAGAGAAGGGCCACAGGAATGATGACAATGATGAAGGAACTTCAGATGCCACTGTTGGGAAGTCACCATCTTGGGTTTGATGACTCTAAGAACATAGCTAGGGTGTTGCAACACATGCTTTCTGATGGTGCAGTAGTGCAGATTACAGCAAGGAGGGATCATAATTCTCCTGAGAAGGTTGAATTTCTATTCAAGAACAGAATAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1900368 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

328

Amino Acids

38.03

Weight (kDa)

8.88

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15140 AT3G15140
fragaria_vesca	FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250
malus_domestica	MD11G1255900.v1.1
prunus_persica	Prupe.4G173900_v2.0.a1
pyrus_communis	pycom11g22620
rosa_chinensis	RchiOBHm_Chr5g0032321
rosa_laevigata	RLG00000033385
rosa_roxburghii	Rroxscaffold_1G00048100
rosa_rugosa	Rorug05G0130800 Rorug05G0130900
rosa_samantha	Rh5AG224300 Rh5BG225200 Rh5CG250700 Rh5DG229900
rosa_wichuraiana	Rw5G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	167, 202
AciI	CCGC	6 cut(s)	100, 120, 165, 179, 202, 627
AclWI	GGATC	4 cut(s)	251, 264, 749, 939
AcsI	RAATTY	5 cut(s)	387, 518, 684, 766, 956
AcuI	CTGAAG	1 cut(s)	800
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	201, 830
AgsI	TTSAA	9 cut(s)	280, 305, 325, 386, 430, 575, 584, 956, 967
AluBI	AGCT	4 cut(s)	29, 551, 718, 872
AluI	AGCT	4 cut(s)	29, 551, 718, 872
Alw21I	GWGCWC	1 cut(s)	245
Alw44I	GTGCAC	1 cut(s)	241
AlwI	GGATC	4 cut(s)	251, 264, 749, 939
AoxI	GGCC	3 cut(s)	209, 461, 783
ApaLI	GTGCAC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	644
ApoI	RAATTY	5 cut(s)	387, 518, 684, 766, 956
AspS9I	GGNCC	3 cut(s)	192, 210, 783
AsuHPI	GGTGA	3 cut(s)	109, 724, 830
AvaII	GGWCC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	3 cut(s)	244, 849, 893
BceAI	ACGGC	2 cut(s)	2, 145
BclI	TGATCA	1 cut(s)	78
BfaI	CTAG	2 cut(s)	69, 873
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	1 cut(s)	645
BlsI	GCNGC	1 cut(s)	646
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	3 cut(s)	192, 210, 783
BmiI	GGNNCC	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	676
BmsI	GCATC	3 cut(s)	406, 610, 810
BmuI	ACTGGG	1 cut(s)	676
BpmI	CTGGAG	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	759
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 830
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	671
Bse8I	GATNNNNATC	1 cut(s)	759
BseGI	GGATG	1 cut(s)	571
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	2 cut(s)	201, 830
BseMII	CTCAG	3 cut(s)	353, 611, 936
BseNI	ACTGG	1 cut(s)	671
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	656
BsgI	GTGCAG	2 cut(s)	924, 932
BshFI	GGCC	3 cut(s)	211, 463, 785
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	3 cut(s)	170, 195, 401
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	201, 830
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	2 cut(s)	5, 173
BsnI	GGCC	3 cut(s)	211, 463, 785
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	6 cut(s)	78, 256, 298, 367, 741, 931
BspACI	CCGC	6 cut(s)	100, 120, 165, 179, 202, 627
BspANI	GGCC	3 cut(s)	211, 463, 785
BspCNI	CTCAG	3 cut(s)	352, 610, 937
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	4 cut(s)	251, 264, 749, 939
BsrBI	CCGCTC	2 cut(s)	167, 202
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	671
BssAI	RCCGGY	1 cut(s)	194
BssMI	GATC	6 cut(s)	78, 256, 298, 367, 741, 931
Bst4CI	ACNGT	3 cut(s)	533, 609, 828
Bst6I	CTCTTC	2 cut(s)	56, 612
BstAPI	GCANNNNNTGC	1 cut(s)	889
BstC8I	GCNNGC	3 cut(s)	31, 158, 200
BstDEI	CTNAG	5 cut(s)	339, 346, 597, 861, 945
BstF5I	GGATG	1 cut(s)	571
BstKTI	GATC	6 cut(s)	81, 259, 301, 370, 744, 934
BstMBI	GATC	6 cut(s)	78, 256, 298, 367, 741, 931
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 208, 889
BstNSI	RCATGY	1 cut(s)	892
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	656
BstX2I	RGATCY	2 cut(s)	256, 298
BstYI	RGATCY	2 cut(s)	256, 298
BsuRI	GGCC	3 cut(s)	211, 463, 785
BtsCI	GGATG	1 cut(s)	571
BtsIMutI	CAGTG	1 cut(s)	824
Cac8I	GCNNGC	3 cut(s)	31, 158, 200
CciI	TCATGA	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	192, 210, 783
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	7 cut(s)	214, 247, 268, 284, 319, 542, 889
CviJI	RGCY	9 cut(s)	17, 29, 160, 211, 463, 551, 718, 785, 872
CviKI_1	RGCY	9 cut(s)	17, 29, 160, 211, 463, 551, 718, 785, 872
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	5 cut(s)	339, 346, 597, 861, 945
DpnI	GATC	6 cut(s)	80, 258, 300, 369, 743, 933
DpnII	GATC	6 cut(s)	78, 256, 298, 367, 741, 931
Eam1104I	CTCTTC	2 cut(s)	56, 612
EarI	CTCTTC	2 cut(s)	56, 612
EciI	GGCGGA	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	800
FaeI	CATG	7 cut(s)	217, 250, 271, 287, 322, 545, 892
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	7 cut(s)	213, 246, 267, 283, 318, 541, 888
FauI	CCCGC	2 cut(s)	186, 620
FbaI	TGATCA	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	645
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	1 cut(s)	645
FspBI	CTAG	2 cut(s)	69, 873
GluI	GCNGC	1 cut(s)	645
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	211, 463, 785
HapII	CCGG	3 cut(s)	170, 195, 401
HgaI	GACGC	1 cut(s)	98
Hin1II	CATG	7 cut(s)	217, 250, 271, 287, 322, 545, 892
HincII	GTYRAC	2 cut(s)	529, 594
HindII	GTYRAC	2 cut(s)	529, 594
HindIII	AAGCTT	1 cut(s)	716
HinfI	GANTC	2 cut(s)	325, 857
HpaI	GTTAAC	1 cut(s)	594
HpaII	CCGG	3 cut(s)	170, 195, 401
HphI	GGTGA	3 cut(s)	109, 724, 830
Hpy166II	GTNNAC	3 cut(s)	243, 529, 594
Hpy188I	TCNGA	3 cut(s)	186, 819, 898
Hpy188III	TCNNGA	7 cut(s)	284, 294, 371, 392, 689, 944, 967
Hpy8I	GTNNAC	3 cut(s)	243, 529, 594
HpyAV	CCTTC	8 cut(s)	124, 133, 147, 183, 497, 774, 802, 943
HpyCH4III	ACNGT	3 cut(s)	533, 609, 828
HpyCH4V	TGCA	6 cut(s)	243, 419, 699, 883, 905, 913
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 208, 889
HpyF3I	CTNAG	5 cut(s)	339, 346, 597, 861, 945
Hsp92II	CATG	7 cut(s)	217, 250, 271, 287, 322, 545, 892
Ksp22I	TGATCA	1 cut(s)	78
KspAI	GTTAAC	1 cut(s)	594
Kzo9I	GATC	6 cut(s)	78, 256, 298, 367, 741, 931
LmnI	GCTCC	2 cut(s)	45, 172
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	3 cut(s)	406, 610, 810
MaeI	CTAG	2 cut(s)	69, 873
MaeIII	GTNAC	4 cut(s)	22, 307, 652, 836
MalI	GATC	6 cut(s)	80, 258, 300, 369, 743, 933
MbiI	CCGCTC	2 cut(s)	167, 202
MboI	GATC	6 cut(s)	78, 256, 298, 367, 741, 931
MboII	GAAGA	6 cut(s)	43, 132, 293, 563, 596, 629
MflI	RGATCY	2 cut(s)	256, 298
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	8 cut(s)	381, 387, 518, 578, 684, 766, 937, 956
MlyI	GAGTC	1 cut(s)	851
MnlI	CCTC	9 cut(s)	97, 139, 192, 201, 247, 367, 453, 613, 921
MseI	TTAA	5 cut(s)	407, 561, 593, 636, 750
MslI	CAYNNNNRTG	2 cut(s)	248, 791
MspI	CCGG	3 cut(s)	170, 195, 401
Mva1269I	GAATGC	2 cut(s)	5, 173
MwoI	GCNNNNNNNGC	3 cut(s)	99, 208, 889
NdeII	GATC	6 cut(s)	78, 256, 298, 367, 741, 931
NlaIII	CATG	7 cut(s)	217, 250, 271, 287, 322, 545, 892
NlaIV	GGNNCC	1 cut(s)	258
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	3 cut(s)	22, 307, 836
NspI	RCATGY	1 cut(s)	892
PagI	TCATGA	1 cut(s)	283
PctI	GAATGC	2 cut(s)	5, 173
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	646
PleI	GAGTC	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	851
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	3 cut(s)	192, 210, 783
PsuI	RGATCY	2 cut(s)	256, 298
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	2 cut(s)	248, 791
SaqAI	TTAA	5 cut(s)	407, 561, 593, 636, 750
SatI	GCNGC	1 cut(s)	645
Sau3AI	GATC	6 cut(s)	78, 256, 298, 367, 741, 931
Sau96I	GGNCC	3 cut(s)	192, 210, 783
SchI	GAGTC	1 cut(s)	851
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	3 cut(s)	406, 610, 810
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	2 cut(s)	248, 791
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	8 cut(s)	381, 387, 518, 578, 684, 766, 937, 956
SsiI	CCGC	6 cut(s)	100, 120, 165, 179, 202, 627
SspMI	CTAG	2 cut(s)	69, 873
TaaI	ACNGT	3 cut(s)	533, 609, 828
TaqI	TCGA	1 cut(s)	501
TasI	AATT	8 cut(s)	381, 387, 518, 578, 684, 766, 937, 956
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	5 cut(s)	407, 561, 593, 636, 750
Tru9I	TTAA	5 cut(s)	407, 561, 593, 636, 750
TscAI	CASTG	1 cut(s)	831
TseFI	GTSAC	3 cut(s)	22, 307, 836
TseI	GCWGC	1 cut(s)	644
Tsp45I	GTSAC	3 cut(s)	22, 307, 836
TspDTI	ATGAA	2 cut(s)	507, 821
TspGWI	ACGGA	2 cut(s)	482, 711
TspRI	CASTG	1 cut(s)	831
VneI	GTGCAC	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	5 cut(s)	387, 518, 684, 766, 956
XceI	RCATGY	1 cut(s)	892
XspI	CTAG	2 cut(s)	69, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.