Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008633

Physical Location & Seq

Genomic Coordinates Forward (+)

36874432 .. 36879154

Gene Structure 4723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1255900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCGTTTCCGAGAGCCAGACTTGTCACTCTCCCACTTCTTCCTTCACTCTTCTCAACCACTCTCAAACCCTTCCTTCCCATTTCTCCCTTACTCCCTCCTCCTCCCGTCCGTTCACTCGCCGCCTTTGCCTCCCTTTCTGCTTCCGAAACCCAAGACTCACCGGCTCCGCGGGTCCCGCATCCTCGAAAGACCGCCGAACGGTGGAAGCCCATGTGTTTGTATTACACGCAACGGAAGTGCACTATGATGGAGGATCCTATGCACATGGAGAAGTTCAATCATAACTGCTCTAGAGATCTTGAAGTGACGAATTCGATGTCAAACGGCATCCGCTTTCAGAACCTAGATTTTTTTCTTGTACTTGATTTGGAGGGAAAAGTTGAAATTCTTGAGTTTCCAGTTCTGATGATTGATGCAAAAACCATGAATGTCGTGGATTTTTTCCACAGATTCGTGAGGCCAACGGAGATGAGCGAGACAAGAATAAATGAATATATTGAAGGAAAGTATGGCAAATTTGGAGTCGATCGTGTTTGGCATGATACAGCTATACCATTTAAGGATGTTCTTCAACAATTTGAAGCATGGTTAATTCAGCATCAGTTGTGGGGAGAGGAGTTGGGTGGGTGTCTTAATCGAGCAGCATTCGTCACTTGTGGAAACTGGGATTTGAAAACAAAAGTTCCTCAGCAATGCAAAGTGTCAAGGATGAAGCTTCCCTCATATTTTATGGAATGGATCAATATCAAAGATGTCTATCTAAATTTTTACAAGAGAAGGGCCACAGGAATGATGACGATGATGAAGGAACTTCAGATACCATTGTTGGGAAGTCACCATCTTGGGTTTGATGACTCAAAGAACATAGCAAGGGTATTACAACACATGCTCGCTGATGGTGCGGTTATACAGATTAGCGCAAGGAGGAATCCCGATTCTCCTGAGAATGTCGAATTTCTGTTCAAGAACAGAATTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1900368 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

328

Amino Acids

37.93

Weight (kDa)

8.96

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	122 - 294	2e-09	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15140 AT3G15140
fragaria_vesca	FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250
malus_domestica	MD11G1255900.v1.1
prunus_persica	Prupe.4G173900_v2.0.a1
pyrus_communis	pycom11g22620
rosa_chinensis	RchiOBHm_Chr5g0032321
rosa_laevigata	RLG00000033385
rosa_roxburghii	Rroxscaffold_1G00048100
rosa_rugosa	Rorug05G0130800 Rorug05G0130900
rosa_samantha	Rh5AG224300 Rh5BG225200 Rh5CG250700 Rh5DG229900
rosa_wichuraiana	Rw5G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	172
AciI	CCGC	7 cut(s)	123, 170, 172, 179, 195, 334, 905
AclWI	GGATC	3 cut(s)	251, 264, 749
AcsI	RAATTY	5 cut(s)	313, 387, 518, 766, 956
AcuI	CTGAAG	1 cut(s)	800
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	3 cut(s)	201, 204, 830
AgsI	TTSAA	8 cut(s)	280, 305, 386, 503, 575, 584, 676, 967
AluBI	AGCT	2 cut(s)	551, 718
AluI	AGCT	2 cut(s)	551, 718
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	473
Alw44I	GTGCAC	1 cut(s)	241
AlwI	GGATC	3 cut(s)	251, 264, 749
AoxI	GGCC	2 cut(s)	461, 783
ApaLI	GTGCAC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	644
ApoI	RAATTY	5 cut(s)	313, 387, 518, 766, 956
ArsI	GACNNNNNNTTYG	4 cut(s)	305, 337, 510, 542
AspLEI	GCGC	1 cut(s)	923
AspS9I	GGNCC	2 cut(s)	175, 783
AsuHPI	GGTGA	2 cut(s)	153, 830
AvaII	GGWCC	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	245
BaeI	ACNNNNGTAYC	2 cut(s)	812, 845
BamHI	GGATCC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	245
BbvCI	CCTCAGC	1 cut(s)	690
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	3 cut(s)	244, 849, 893
BceAI	ACGGC	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	294, 347
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	2 cut(s)	123, 645
BlsI	GCNGC	2 cut(s)	124, 646
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	175, 783
BmiI	GGNNCC	4 cut(s)	168, 176, 177, 258
BmrI	ACTGGG	1 cut(s)	676
BmsI	GCATC	4 cut(s)	190, 339, 406, 610
BmuI	ACTGGG	1 cut(s)	676
Bpu10I	CCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	413
BsaBI	GATNNNNATC	2 cut(s)	746, 759
BsaJI	CCNNGG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 204, 830
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	401, 671
Bse3DI	GCAATG	1 cut(s)	701
Bse8I	GATNNNNATC	2 cut(s)	746, 759
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	4 cut(s)	181, 330, 571, 717
BseJI	GATNNNNATC	2 cut(s)	746, 759
BseLI	CCNNNNNNNGG	3 cut(s)	201, 204, 830
BseMI	GCAATG	1 cut(s)	701
BseMII	CTCAG	2 cut(s)	704, 936
BseNI	ACTGG	2 cut(s)	401, 671
BseRI	GAGGAG	3 cut(s)	90, 93, 632
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	2 cut(s)	463, 785
BsiEI	CGRYCG	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	3 cut(s)	201, 204, 830
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	2 cut(s)	463, 785
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	4 cut(s)	256, 298, 529, 741
BspACI	CCGC	7 cut(s)	123, 170, 172, 179, 195, 334, 905
BspANI	GGCC	2 cut(s)	463, 785
BspCNI	CTCAG	2 cut(s)	703, 937
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	4 cut(s)	168, 176, 177, 258
BspPI	GGATC	3 cut(s)	251, 264, 749
BsrDI	GCAATG	1 cut(s)	701
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	401, 671
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	4 cut(s)	256, 298, 529, 741
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	894
BstDEI	CTNAG	2 cut(s)	690, 945
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	4 cut(s)	181, 330, 571, 717
BstFNI	CGCG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	923
BstKTI	GATC	4 cut(s)	259, 301, 532, 744
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	4 cut(s)	256, 298, 529, 741
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 178, 902
BstNSI	RCATGY	1 cut(s)	892
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	656
BstX2I	RGATCY	2 cut(s)	256, 298
BstYI	RGATCY	2 cut(s)	256, 298
BsuRI	GGCC	2 cut(s)	463, 785
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	4 cut(s)	181, 330, 571, 717
Cac8I	GCNNGC	1 cut(s)	894
CfoI	GCGC	1 cut(s)	923
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	175, 783
Cfr42I	CCGCGG	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	6 cut(s)	214, 268, 427, 542, 588, 889
CviJI	RGCY	7 cut(s)	17, 167, 211, 463, 551, 718, 785
CviKI_1	RGCY	7 cut(s)	17, 167, 211, 463, 551, 718, 785
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	2 cut(s)	690, 945
DpnI	GATC	4 cut(s)	258, 300, 531, 743
DpnII	GATC	4 cut(s)	256, 298, 529, 741
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	800
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	313
FaeI	CATG	6 cut(s)	217, 271, 430, 545, 591, 892
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	6 cut(s)	213, 267, 426, 541, 587, 888
FauI	CCCGC	2 cut(s)	165, 186
Fnu4HI	GCNGC	2 cut(s)	123, 645
FokI	GGATG	4 cut(s)	168, 317, 578, 724
Fsp4HI	GCNGC	2 cut(s)	123, 645
FspBI	CTAG	2 cut(s)	294, 347
GlaI	GCGC	1 cut(s)	922
GluI	GCNGC	2 cut(s)	123, 645
HaeIII	GGCC	2 cut(s)	463, 785
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	1 cut(s)	923
Hin1II	CATG	6 cut(s)	217, 271, 430, 545, 591, 892
Hin6I	GCGC	1 cut(s)	921
HinP1I	GCGC	1 cut(s)	921
HindIII	AAGCTT	1 cut(s)	716
HinfI	GANTC	6 cut(s)	158, 453, 525, 857, 931, 938
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	153, 830
Hpy166II	GTNNAC	2 cut(s)	116, 243
Hpy188I	TCNGA	5 cut(s)	12, 148, 342, 408, 819
Hpy188III	TCNNGA	7 cut(s)	294, 302, 392, 457, 935, 944, 967
Hpy8I	GTNNAC	2 cut(s)	116, 243
HpyAV	CCTTC	6 cut(s)	54, 82, 86, 497, 774, 802
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	4 cut(s)	243, 265, 419, 699
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 178, 902
HpyF3I	CTNAG	2 cut(s)	690, 945
Hsp92II	CATG	6 cut(s)	217, 271, 430, 545, 591, 892
HspAI	GCGC	1 cut(s)	921
KflI	GGGWCCC	1 cut(s)	175
KspI	CCGCGG	1 cut(s)	173
Kzo9I	GATC	4 cut(s)	256, 298, 529, 741
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	31, 177, 414, 652, 774, 957
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	4 cut(s)	190, 339, 406, 610
MaeI	CTAG	2 cut(s)	294, 347
MaeIII	GTNAC	4 cut(s)	25, 307, 652, 836
MalI	GATC	4 cut(s)	258, 300, 531, 743
MboI	GATC	4 cut(s)	256, 298, 529, 741
MboII	GAAGA	3 cut(s)	32, 43, 563
MflI	RGATCY	2 cut(s)	256, 298
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	8 cut(s)	313, 387, 518, 578, 594, 766, 956, 975
MlyI	GAGTC	3 cut(s)	152, 534, 851
MseI	TTAA	3 cut(s)	561, 593, 636
MslI	CAYNNNNRTG	2 cut(s)	248, 791
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	647
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	128, 178, 902
NdeII	GATC	4 cut(s)	256, 298, 529, 741
NlaIII	CATG	6 cut(s)	217, 271, 430, 545, 591, 892
NlaIV	GGNNCC	4 cut(s)	168, 176, 177, 258
NmuCI	GTSAC	4 cut(s)	25, 307, 652, 836
NspI	RCATGY	1 cut(s)	892
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	3 cut(s)	453, 931, 938
PkrI	GCNGC	2 cut(s)	124, 646
Ple19I	CGATCG	1 cut(s)	532
PleI	GAGTC	3 cut(s)	152, 533, 851
PpsI	GAGTC	3 cut(s)	152, 533, 851
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
PspN4I	GGNNCC	4 cut(s)	168, 176, 177, 258
PspPI	GGNCC	2 cut(s)	175, 783
PspPPI	RGGWCCY	1 cut(s)	175
PsrI	GAACNNNNNNTAC	2 cut(s)	804, 836
PsuI	RGATCY	2 cut(s)	256, 298
PvuI	CGATCG	1 cut(s)	532
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
RseI	CAYNNNNRTG	2 cut(s)	248, 791
SacII	CCGCGG	1 cut(s)	173
SaqAI	TTAA	3 cut(s)	561, 593, 636
SatI	GCNGC	2 cut(s)	123, 645
Sau3AI	GATC	4 cut(s)	256, 298, 529, 741
Sau96I	GGNCC	2 cut(s)	175, 783
SchI	GAGTC	3 cut(s)	152, 534, 851
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	4 cut(s)	348, 553, 720, 983
SfaNI	GCATC	4 cut(s)	190, 339, 406, 610
Sfr303I	CCGCGG	1 cut(s)	173
SgrBI	CCGCGG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	2 cut(s)	248, 791
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	8 cut(s)	313, 387, 518, 578, 594, 766, 956, 975
SsiI	CCGC	7 cut(s)	123, 170, 172, 179, 195, 334, 905
SspMI	CTAG	2 cut(s)	294, 347
TaaI	ACNGT	1 cut(s)	204
TaqI	TCGA	5 cut(s)	187, 317, 528, 640, 954
TasI	AATT	8 cut(s)	313, 387, 518, 578, 594, 766, 956, 975
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	3 cut(s)	453, 931, 938
Tru1I	TTAA	3 cut(s)	561, 593, 636
Tru9I	TTAA	3 cut(s)	561, 593, 636
TseFI	GTSAC	4 cut(s)	25, 307, 652, 836
TseI	GCWGC	1 cut(s)	644
Tsp45I	GTSAC	4 cut(s)	25, 307, 652, 836
TspDTI	ATGAA	4 cut(s)	443, 507, 728, 821
TspGWI	ACGGA	3 cut(s)	101, 250, 482
VneI	GTGCAC	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	5 cut(s)	313, 387, 518, 766, 956
XbaI	TCTAGA	1 cut(s)	293
XceI	RCATGY	1 cut(s)	892
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XspI	CTAG	2 cut(s)	294, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.