Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008633

Physical Location & Seq

Genomic Coordinates Reverse (-)

26502510 .. 26506691

Gene Structure 4182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033385

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCGTCCCTTCACCGCCTTTGCCTCTCTCCCGGCTTCCCAACAAGTCGGTGAGCCGTCCACTCCGGCATTCCCAGCTCCGAAAAGGAGCGGCGAGAGGTGGAAGCCCATGTGCTTGTACTACACACAAGGGAAATGCACCATGATGGAGGATCCTGCCCACATGGAGAAGTTCAATCATGATTGCTCCAGAGATCTTCAAGTGAAAAATTCCATGTCAAACCTCATTTGCTCTCAGCATTTGGATTATTTTCTTGTGCTTGATCTGGAGGGAAAAATTGAAATTCTTGAGTTTCCAGTTCTAATCATTGATGCAAAAACCATGAATGTCACTGATTTTTTTCATAGGTTTGTAAGGCCAACGGAGATGAGCGAGAAAAGGATAAATGAATATATTGAAGGAAAGTATGGCAAATTTGGAGTCGACCGTGTTTGGCATGACACAGCTATACCATTTAAGGACGTTCTTCAACAATTTGAAGAATGGTTAACTCAGCATCAACTGTGGGGAGAAGATGTGGGCGGGTGTCTTAATCAAGCAGCATTCGTAACTTGTGGAAACTGGGATTTGAAAACAAAAGTTCCTGAACAATGCAAAGTGGCAAAGGTGAAGCTTCCGTCATATTTTATGGAATGGATCAATCTCAAAGATGTCTATCTAAATTTTTACAAGAGAAGGGCCACAGGAATGATGACAATGATGAAGGAACTTCACATGCCATTGTTGGGAAGTCACCATCTTGGATTTGATGACTCAAAGAACATAGCAAGGGTGTTGCAACACATGCTTGCTGATGGTGCAATACTGCAGATTACAGCGAGGAGGGATCATAATTCTCCTGAGAAGGTTGAGTTTCTATTCAAGAACAGAATAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1900368 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

293

Amino Acids

33.99

Weight (kDa)

7.65

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	88 - 259	8.2e-10	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15140 AT3G15140
fragaria_vesca	FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250
malus_domestica	MD11G1255900.v1.1
prunus_persica	Prupe.4G173900_v2.0.a1
pyrus_communis	pycom11g22620
rosa_chinensis	RchiOBHm_Chr5g0032321
rosa_laevigata	RLG00000033385
rosa_roxburghii	Rroxscaffold_1G00048100
rosa_rugosa	Rorug05G0130800 Rorug05G0130900
rosa_samantha	Rh5AG224300 Rh5BG225200 Rh5CG250700 Rh5DG229900
rosa_wichuraiana	Rw5G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	3 cut(s)	15, 90, 522
AclWI	GGATC	4 cut(s)	146, 159, 644, 834
AcsI	RAATTY	4 cut(s)	208, 282, 413, 661
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	725
AgsI	TTSAA	8 cut(s)	175, 200, 281, 398, 470, 479, 571, 862
AluBI	AGCT	3 cut(s)	77, 446, 613
AluI	AGCT	3 cut(s)	77, 446, 613
AlwI	GGATC	4 cut(s)	146, 159, 644, 834
AoxI	GGCC	2 cut(s)	356, 678
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	4 cut(s)	208, 282, 413, 661
ArsI	GACNNNNNNTTYG	2 cut(s)	405, 437
AspS9I	GGNCC	1 cut(s)	678
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	4 cut(s)	4, 62, 619, 725
BamHI	GGATCC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	3 cut(s)	139, 744, 788
BceAI	ACGGC	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	806
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	91, 540
BlsI	GCNGC	2 cut(s)	92, 541
Bme1390I	CCNGG	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	678
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	2 cut(s)	301, 505
BmuI	ACTGGG	1 cut(s)	571
BpmI	CTGGAG	2 cut(s)	172, 287
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	654
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse1I	ACTGG	2 cut(s)	296, 566
Bse8I	GATNNNNATC	1 cut(s)	654
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMII	CTCAG	3 cut(s)	248, 506, 831
BseNI	ACTGG	2 cut(s)	296, 566
BseRI	GAGGAG	1 cut(s)	835
BseXI	GCAGC	1 cut(s)	551
BseYI	CCCAGC	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	358, 680
BsiEI	CGRYCG	1 cut(s)	427
BsiSI	CCGG	2 cut(s)	32, 65
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmI	GAATGC	2 cut(s)	68, 542
BsnI	GGCC	2 cut(s)	358, 680
Bsp143I	GATC	5 cut(s)	151, 193, 262, 636, 826
BspACI	CCGC	3 cut(s)	15, 90, 522
BspANI	GGCC	2 cut(s)	358, 680
BspCNI	CTCAG	3 cut(s)	247, 505, 832
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	810
BspPI	GGATC	4 cut(s)	146, 159, 644, 834
BsrBI	CCGCTC	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	296, 566
BssMI	GATC	5 cut(s)	151, 193, 262, 636, 826
Bst4CI	ACNGT	2 cut(s)	428, 504
BstAPI	GCANNNNNTGC	1 cut(s)	784
BstC8I	GCNNGC	1 cut(s)	789
BstDEI	CTNAG	3 cut(s)	234, 492, 840
BstKTI	GATC	5 cut(s)	154, 196, 265, 639, 829
BstMBI	GATC	5 cut(s)	151, 193, 262, 636, 826
BstMCI	CGRYCG	1 cut(s)	427
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 784, 797
BstNSI	RCATGY	2 cut(s)	718, 787
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	806
BstV1I	GCAGC	1 cut(s)	551
BstX2I	RGATCY	2 cut(s)	151, 193
BstYI	RGATCY	2 cut(s)	151, 193
BsuRI	GGCC	2 cut(s)	358, 680
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	789
CciI	TCATGA	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	678
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	9 cut(s)	109, 142, 163, 179, 214, 322, 437, 715, 784
CviJI	RGCY	8 cut(s)	35, 55, 77, 106, 358, 446, 613, 680
CviKI_1	RGCY	8 cut(s)	35, 55, 77, 106, 358, 446, 613, 680
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	234, 492, 840
DpnI	GATC	5 cut(s)	153, 195, 264, 638, 828
DpnII	GATC	5 cut(s)	151, 193, 262, 636, 826
FaeI	CATG	9 cut(s)	112, 145, 166, 182, 217, 325, 440, 718, 787
FatI	CATG	9 cut(s)	108, 141, 162, 178, 213, 321, 436, 714, 783
FauI	CCCGC	1 cut(s)	515
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	91, 540
Fsp4HI	GCNGC	2 cut(s)	91, 540
GluI	GCNGC	2 cut(s)	91, 540
GsaI	CCCAGC	1 cut(s)	77
GsuI	CTGGAG	2 cut(s)	172, 287
HaeIII	GGCC	2 cut(s)	358, 680
HapII	CCGG	2 cut(s)	32, 65
Hin1II	CATG	9 cut(s)	112, 145, 166, 182, 217, 325, 440, 718, 787
HincII	GTYRAC	2 cut(s)	424, 489
HindII	GTYRAC	2 cut(s)	424, 489
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	2 cut(s)	420, 752
HpaI	GTTAAC	1 cut(s)	489
HpaII	CCGG	2 cut(s)	32, 65
HphI	GGTGA	4 cut(s)	4, 62, 619, 725
Hpy166II	GTNNAC	3 cut(s)	60, 424, 489
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	7 cut(s)	179, 189, 266, 287, 584, 839, 862
Hpy8I	GTNNAC	3 cut(s)	60, 424, 489
HpyAV	CCTTC	5 cut(s)	19, 392, 669, 697, 838
HpyCH4III	ACNGT	2 cut(s)	428, 504
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	6 cut(s)	138, 314, 594, 778, 800, 808
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 784, 797
HpyF3I	CTNAG	3 cut(s)	234, 492, 840
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	9 cut(s)	112, 145, 166, 182, 217, 325, 440, 718, 787
KspAI	GTTAAC	1 cut(s)	489
Kzo9I	GATC	5 cut(s)	151, 193, 262, 636, 826
LmnI	GCTCC	3 cut(s)	82, 87, 191
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	2 cut(s)	301, 505
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	3 cut(s)	328, 547, 731
MalI	GATC	5 cut(s)	153, 195, 264, 638, 828
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	5 cut(s)	151, 193, 262, 636, 826
MboII	GAAGA	4 cut(s)	188, 458, 491, 524
MflI	RGATCY	2 cut(s)	151, 193
MluCI	AATT	7 cut(s)	208, 276, 282, 413, 473, 661, 832
MlyI	GAGTC	2 cut(s)	429, 746
MnlI	CCTC	7 cut(s)	34, 90, 142, 233, 262, 813, 816
MseI	TTAA	3 cut(s)	456, 488, 531
MslI	CAYNNNNRTG	2 cut(s)	143, 686
MspI	CCGG	2 cut(s)	32, 65
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	2 cut(s)	68, 542
MwoI	GCNNNNNNNGC	3 cut(s)	74, 784, 797
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	5 cut(s)	151, 193, 262, 636, 826
NlaIII	CATG	9 cut(s)	112, 145, 166, 182, 217, 325, 440, 718, 787
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	328, 731
NspI	RCATGY	2 cut(s)	718, 787
PagI	TCATGA	1 cut(s)	178
PctI	GAATGC	2 cut(s)	68, 542
PkrI	GCNGC	2 cut(s)	92, 541
PleI	GAGTC	2 cut(s)	428, 746
PpsI	GAGTC	2 cut(s)	428, 746
PspFI	CCCAGC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	678
PstI	CTGCAG	1 cut(s)	810
PsuI	RGATCY	2 cut(s)	151, 193
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	2 cut(s)	143, 686
SalI	GTCGAC	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	456, 488, 531
SatI	GCNGC	2 cut(s)	91, 540
Sau3AI	GATC	5 cut(s)	151, 193, 262, 636, 826
Sau96I	GGNCC	1 cut(s)	678
SchI	GAGTC	2 cut(s)	429, 746
ScrFI	CCNGG	1 cut(s)	32
SfaNI	GCATC	2 cut(s)	301, 505
SfcI	CTRYAG	1 cut(s)	806
SmiMI	CAYNNNNRTG	2 cut(s)	143, 686
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	7 cut(s)	208, 276, 282, 413, 473, 661, 832
SsiI	CCGC	3 cut(s)	15, 90, 522
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	428, 504
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	423
TasI	AATT	7 cut(s)	208, 276, 282, 413, 473, 661, 832
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	1 cut(s)	93
Tru1I	TTAA	3 cut(s)	456, 488, 531
Tru9I	TTAA	3 cut(s)	456, 488, 531
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	2 cut(s)	328, 731
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	2 cut(s)	328, 731
TspDTI	ATGAA	4 cut(s)	332, 338, 402, 716
TspGWI	ACGGA	2 cut(s)	377, 606
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	4 cut(s)	208, 282, 413, 661
XceI	RCATGY	2 cut(s)	718, 787
XmiI	GTMKAC	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.