Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008633

Physical Location & Seq

Genomic Coordinates Reverse (-)

10291366 .. 10295740

Gene Structure 4375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G173900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCATTTGCCAGAGCCAGACTTACCACTCTGCCAATGATTCCTTCACTCTTCTCAGTAACTCTCAAACCCTTCCTTCACATTCCTCACCCCCTCCCTCCTCCAATGCGTTCCCTCTTCATTCCCTTTGCCTCTCTCTCTGCTTCCCAAACCCATCACGACCCATCAGCTCCTTCGGTCCCGTCGTATCTGAGAAAGAGCAGCCAACCATGGAAGCCCATGTGTTTGTATTACACGCAAGGGAAATGCACTATGATGGAGGATCCTACCCACTTGGAGAAATTCAATCATGATTGCTCCAGAGATCTTCAAGTGACAAATTACATGTCACACCGCATCTGCTCTCAGAACTTAGATTATTTTCTTGTGCTTGATTTGGAGGGAAAAATTGAAATTCTTGAGTTTCCTGTTCTGATGATTGATGCAAATACCATGGATGTCGTGGATTTTTTCCACAGATTTGTGAGGCCGTCCGAGATGAGCGAGAAAAGAATAAATGAATATATTGAAGGAAAGTATGGCAAATTTGGAGTTGATCGTGTTTGGCATGATACAGCTATACCATTTAAGGATGTTCTTCAACAATTTGAAGCCTGGCTAATTCAGCATCAATTATGGGGAGAAGAGTTGGGTGGGTGCCTTAATCGAGCAGCATTTGTAACTTGTGGAAACTGGGATTTGAAAACAAAAGTTCCTGAGCAATGCAAAGTGTCAAGGATGAAGCTTCCGTCATATTTTATGGAATGGATCAATCTCAAAGATGTCTATCTAAATTTTTACAAGAGGAGGGCAACGGGAATGATGACAATGATGAAGGAGCTTCATTTACCATTGTTGGGAAGTCACCACCTTGGATTCGATGACTCAAAGAACATTGCAAGGGTAGTGCAACACATGCTTGCTGATGGTGCACTTATAGAAATTACCGCAAGGAGGAATCCTGATTCTCTTGAGAAGGTTGAATTTCTATTCAAGAACAGAATAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1900368 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

330

Amino Acids

38.32

Weight (kDa)

8.39

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15140 AT3G15140
fragaria_vesca	FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250
malus_domestica	MD11G1255900.v1.1
prunus_persica	Prupe.4G173900_v2.0.a1
pyrus_communis	pycom11g22620
rosa_chinensis	RchiOBHm_Chr5g0032321
rosa_laevigata	RLG00000033385
rosa_roxburghii	Rroxscaffold_1G00048100
rosa_rugosa	Rorug05G0130800 Rorug05G0130900
rosa_samantha	Rh5AG224300 Rh5BG225200 Rh5CG250700 Rh5DG229900
rosa_wichuraiana	Rw5G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	636
AciI	CCGC	2 cut(s)	334, 927
AclWI	GGATC	3 cut(s)	257, 270, 755
AcsI	RAATTY	5 cut(s)	281, 393, 524, 772, 962
AfiI	CCNNNNNNNGG	2 cut(s)	836, 933
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	9 cut(s)	286, 311, 392, 509, 581, 590, 682, 962, 973
AjnI	CCWGG	1 cut(s)	593
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AluBI	AGCT	4 cut(s)	170, 557, 724, 820
AluI	AGCT	4 cut(s)	170, 557, 724, 820
Alw21I	GWGCWC	1 cut(s)	913
Alw44I	GTGCAC	1 cut(s)	909
AlwI	GGATC	3 cut(s)	257, 270, 755
AoxI	GGCC	1 cut(s)	467
ApaLI	GTGCAC	1 cut(s)	909
ApeKI	GCWGC	2 cut(s)	201, 650
ApoI	RAATTY	5 cut(s)	281, 393, 524, 772, 962
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	80, 836
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	913
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	2 cut(s)	213, 662
BccI	CCATC	4 cut(s)	162, 172, 250, 899
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	595
BglII	AGATCT	1 cut(s)	304
BisI	GCNGC	2 cut(s)	202, 651
BlsI	GCNGC	2 cut(s)	203, 652
Bme1390I	CCNGG	1 cut(s)	595
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	3 cut(s)	180, 264, 638
BmrFI	CCNGG	1 cut(s)	595
BmrI	ACTGGG	1 cut(s)	682
BmsI	GCATC	3 cut(s)	345, 412, 616
BmuI	ACTGGG	1 cut(s)	682
BpmI	CTGGAG	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	2 cut(s)	419, 971
BsaBI	GATNNNNATC	1 cut(s)	765
BsaJI	CCNNGG	3 cut(s)	209, 432, 850
Bsc4I	CCNNNNNNNGG	2 cut(s)	836, 933
Bse1I	ACTGG	1 cut(s)	677
Bse3DI	GCAATG	2 cut(s)	707, 873
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	595
BseDI	CCNNGG	3 cut(s)	209, 432, 850
BseGI	GGATG	3 cut(s)	442, 577, 723
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	2 cut(s)	836, 933
BseMI	GCAATG	2 cut(s)	707, 873
BseMII	CTCAG	4 cut(s)	69, 182, 359, 687
BseNI	ACTGG	1 cut(s)	677
BseRI	GAGGAG	2 cut(s)	90, 799
BseSI	GKGCMC	1 cut(s)	913
BseXI	GCAGC	2 cut(s)	213, 662
BshFI	GGCC	1 cut(s)	469
BshNI	GGYRCC	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	913
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	836, 933
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	913
Bsp143I	GATC	4 cut(s)	262, 304, 535, 747
Bsp19I	CCATGG	2 cut(s)	209, 432
BspACI	CCGC	2 cut(s)	334, 927
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	4 cut(s)	68, 183, 358, 688
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	180, 264, 638
BspPI	GGATC	3 cut(s)	257, 270, 755
BspT107I	GGYRCC	1 cut(s)	636
BsrDI	GCAATG	2 cut(s)	707, 873
BsrI	ACTGG	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	209, 432, 850
BssMI	GATC	4 cut(s)	262, 304, 535, 747
BssT1I	CCWWGG	3 cut(s)	209, 432, 850
Bst2UI	CCWGG	1 cut(s)	595
Bst6I	CTCTTC	3 cut(s)	56, 122, 618
BstAPI	GCANNNNNTGC	1 cut(s)	895
BstC8I	GCNNGC	1 cut(s)	900
BstDEI	CTNAG	5 cut(s)	55, 191, 345, 352, 696
BstDSI	CCRYGG	2 cut(s)	209, 432
BstF5I	GGATG	3 cut(s)	442, 577, 723
BstKTI	GATC	4 cut(s)	265, 307, 538, 750
BstMBI	GATC	4 cut(s)	262, 304, 535, 747
BstMWI	GCNNNNNNNGC	3 cut(s)	604, 895, 908
BstNI	CCWGG	1 cut(s)	595
BstNSI	RCATGY	2 cut(s)	328, 898
BstSCI	CCNGG	1 cut(s)	593
BstSLI	GKGCMC	1 cut(s)	913
BstV1I	GCAGC	2 cut(s)	213, 662
BstX2I	RGATCY	2 cut(s)	262, 304
BstYI	RGATCY	2 cut(s)	262, 304
BsuRI	GGCC	1 cut(s)	469
BtgI	CCRYGG	2 cut(s)	209, 432
BtsCI	GGATG	3 cut(s)	442, 577, 723
Cac8I	GCNNGC	1 cut(s)	900
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	178
CviAII	CATG	7 cut(s)	210, 220, 290, 325, 433, 548, 895
DdeI	CTNAG	5 cut(s)	55, 191, 345, 352, 696
DpnI	GATC	4 cut(s)	264, 306, 537, 749
DpnII	GATC	4 cut(s)	262, 304, 535, 747
Eam1104I	CTCTTC	3 cut(s)	56, 122, 618
EarI	CTCTTC	3 cut(s)	56, 122, 618
Eco130I	CCWWGG	3 cut(s)	209, 432, 850
Eco47I	GGWCC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	593
EcoT14I	CCWWGG	3 cut(s)	209, 432, 850
ErhI	CCWWGG	3 cut(s)	209, 432, 850
FaeI	CATG	7 cut(s)	213, 223, 293, 328, 436, 551, 898
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	7 cut(s)	209, 219, 289, 324, 432, 547, 894
Fnu4HI	GCNGC	2 cut(s)	202, 651
FokI	GGATG	3 cut(s)	449, 584, 730
Fsp4HI	GCNGC	2 cut(s)	202, 651
GluI	GCNGC	2 cut(s)	202, 651
GsuI	CTGGAG	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	469
Hin1II	CATG	7 cut(s)	213, 223, 293, 328, 436, 551, 898
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	5 cut(s)	40, 855, 863, 937, 944
HphI	GGTGA	2 cut(s)	80, 836
Hpy166II	GTNNAC	1 cut(s)	911
Hpy188I	TCNGA	4 cut(s)	192, 348, 414, 475
Hpy188III	TCNNGA	8 cut(s)	158, 290, 300, 398, 695, 941, 950, 973
Hpy8I	GTNNAC	1 cut(s)	911
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	7 cut(s)	54, 82, 86, 183, 503, 808, 949
HpyCH4V	TGCA	6 cut(s)	249, 425, 705, 878, 889, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	604, 895, 908
HpyF3I	CTNAG	5 cut(s)	55, 191, 345, 352, 696
Hsp92II	CATG	7 cut(s)	213, 223, 293, 328, 436, 551, 898
Kzo9I	GATC	4 cut(s)	262, 304, 535, 747
LmnI	GCTCC	3 cut(s)	175, 302, 817
LpnPI	CCDG	9 cut(s)	25, 31, 313, 420, 580, 607, 658, 708, 954
Lsp1109I	GCAGC	2 cut(s)	213, 662
LweI	GCATC	3 cut(s)	345, 412, 616
MaeIII	GTNAC	5 cut(s)	58, 313, 327, 658, 842
MalI	GATC	4 cut(s)	264, 306, 537, 749
MboI	GATC	4 cut(s)	262, 304, 535, 747
MboII	GAAGA	5 cut(s)	43, 109, 299, 569, 635
MflI	RGATCY	2 cut(s)	262, 304
MhlI	GDGCHC	1 cut(s)	913
MlyI	GAGTC	1 cut(s)	857
MseI	TTAA	2 cut(s)	567, 642
MslI	CAYNNNNRTG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	595
MwoI	GCNNNNNNNGC	3 cut(s)	604, 895, 908
NcoI	CCATGG	2 cut(s)	209, 432
NdeII	GATC	4 cut(s)	262, 304, 535, 747
NlaIII	CATG	7 cut(s)	213, 223, 293, 328, 436, 551, 898
NlaIV	GGNNCC	3 cut(s)	180, 264, 638
NmuCI	GTSAC	3 cut(s)	313, 327, 842
NspI	RCATGY	2 cut(s)	328, 898
PagI	TCATGA	1 cut(s)	289
PciI	ACATGT	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PfeI	GAWTC	4 cut(s)	40, 855, 937, 944
PkrI	GCNGC	2 cut(s)	203, 652
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
PscI	ACATGT	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	593
PspN4I	GGNNCC	3 cut(s)	180, 264, 638
PspPI	GGNCC	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	262, 304
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	567, 642
SatI	GCNGC	2 cut(s)	202, 651
Sau3AI	GATC	4 cut(s)	262, 304, 535, 747
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	1 cut(s)	595
SduI	GDGCHC	1 cut(s)	913
SetI	ASST	7 cut(s)	172, 559, 726, 822, 852, 960, 989
SfaNI	GCATC	3 cut(s)	345, 412, 616
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	398, 950
SmoI	CTYRAG	2 cut(s)	398, 950
SsiI	CCGC	2 cut(s)	334, 927
StyD4I	CCNGG	1 cut(s)	593
StyI	CCWWGG	3 cut(s)	209, 432, 850
TaqI	TCGA	2 cut(s)	646, 858
TaqII	GACCGA	1 cut(s)	166
TfiI	GAWTC	4 cut(s)	40, 855, 937, 944
Tru1I	TTAA	2 cut(s)	567, 642
Tru9I	TTAA	2 cut(s)	567, 642
TseFI	GTSAC	3 cut(s)	313, 327, 842
TseI	GCWGC	2 cut(s)	201, 650
Tsp45I	GTSAC	3 cut(s)	313, 327, 842
TspDTI	ATGAA	5 cut(s)	109, 513, 734, 812, 827
TspGWI	ACGGA	1 cut(s)	717
VneI	GTGCAC	1 cut(s)	909
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	5 cut(s)	281, 393, 524, 772, 962
XceI	RCATGY	2 cut(s)	328, 898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.