Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017928

Physical Location & Seq

Genomic Coordinates Forward (+)

5229124 .. 5230646

Gene Structure 1523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTCAGACAATCACGGTCCGATATCGCTCAGCTCCTTTCTTATGGTCGCTATTCAGAAGCTCTTCCTAAGGCGAAGCAATTCTATGAAGATGAGAGAAGGTTATCGGCATATGATCAGGTTGAGCTCTTCTGCACAACCATCTTGCAGAATATATCTTCTTTGAAATATGAAAACAATGTTGATCTGTTACCGGAAGAAACTAAAAAAGCAATGGCCGGAATTATATTTGCTGCATCAAGAATTGGCGAGCTTGAGGATCTTCAACACATAAGGAGCTTCTTCGTTCAAAGATTTGGGCTTAAGTTTGATAAAGAGTGTGTAGATTTGCGCCAAGGAAACGTCGTGGGTTTTGAGATAGTCAAGATTCTAAACACGAATATGCGGGGAGATGAAATTACACATATTGTAAGGGAACTTTCTCATAAGTACAAAACCAACATCACTACTTCTACGGATTCAATAAGTGAAGATTTGGCTTCAAGTGACGATCTCGGCATTGCCGATTCTGATGCGATGAAGGTTGAGAAAATGAAAAGGGCTCTTCGGAGAAAGAAAGTTATGAAGGAGAATTCTAAGTTTTTGCATCCAAATCTTAGAGAGTCTCAGGGAAGAGATCGATCATTCAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

211

Amino Acids

24.42

Weight (kDa)

8.98

Isoelectric Point (pI)

62.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ist1	PF03398	1 - 146	1.6e-32	Regulator of Vps4 activity in the MVB pathway

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15490
fragaria_vesca	FvH4_3g20621
malus_domestica	MD03G1223500.v1.1
prunus_persica	Prupe.4G186000_v2.0.a1 Prupe.4G186000_v2.0.a1
rosa_laevigata	RLG00000033564
rosa_multiflora	Rmu_sc0002460.1_g000083
rosa_roxburghii	Rroxscaffold_1G00045670
rosa_samantha	Rh5BG240200 Rh5CG270600 Rh5DG248400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	571
AfaI	GTAC	1 cut(s)	431
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	5 cut(s)	166, 266, 290, 462, 483
AluBI	AGCT	5 cut(s)	34, 62, 127, 253, 279
AluI	AGCT	5 cut(s)	34, 62, 127, 253, 279
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	609
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	571
Asp700I	GAANNNNTTC	2 cut(s)	63, 80
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	18
AxyI	CCTNAGG	1 cut(s)	69
BanII	GRGCYC	2 cut(s)	129, 544
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	149
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	609
BfrI	CTTAAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	234
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmsI	GCATC	3 cut(s)	245, 502, 595
Bpu1102I	GCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	275
Bsa29I	ATCGAT	1 cut(s)	619
BsaJI	CCNNGG	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	69
Bse3DI	GCAATG	2 cut(s)	219, 498
BseCI	ATCGAT	1 cut(s)	619
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	586
BseMI	GCAATG	2 cut(s)	219, 498
BseMII	CTCAG	2 cut(s)	44, 620
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	194, 219
BsmAI	GTCTC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	129, 544
Bsp143I	GATC	6 cut(s)	115, 184, 259, 490, 616, 620
Bsp1720I	GCTNAGC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	43, 619
BspDI	ATCGAT	1 cut(s)	619
BspPI	GGATC	1 cut(s)	267
BspQI	GCTCTTC	3 cut(s)	69, 134, 549
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	219, 498
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	6 cut(s)	115, 184, 259, 490, 616, 620
BssT1I	CCWWGG	1 cut(s)	334
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	4 cut(s)	69, 134, 549, 607
BstAFI	CTTAAG	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	5 cut(s)	30, 69, 576, 596, 606
BstF5I	GGATG	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	6 cut(s)	118, 187, 262, 493, 619, 623
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	6 cut(s)	115, 184, 259, 490, 616, 620
BstV1I	GCAGC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	619
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	619
BtgZI	GCGATG	1 cut(s)	530
BtsCI	GGATG	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	251
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	619
CpoI	CGGWCCG	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	430
CspI	CGGWCCG	1 cut(s)	18
CviJI	RGCY	9 cut(s)	34, 62, 127, 218, 253, 279, 301, 479, 542
CviKI_1	RGCY	9 cut(s)	34, 62, 127, 218, 253, 279, 301, 479, 542
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	5 cut(s)	30, 69, 576, 596, 606
DpnI	GATC	6 cut(s)	117, 186, 261, 492, 618, 622
DpnII	GATC	6 cut(s)	115, 184, 259, 490, 616, 620
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	4 cut(s)	69, 134, 549, 607
EarI	CTCTTC	4 cut(s)	69, 134, 549, 607
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	2 cut(s)	129, 544
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	571
EcoRV	GATATC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	334
EcoT38I	GRGCYC	2 cut(s)	129, 544
ErhI	CCWWGG	1 cut(s)	334
FauI	CCCGC	1 cut(s)	378
FauNDI	CATATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	573
FriOI	GRGCYC	2 cut(s)	129, 544
Fsp4HI	GCNGC	1 cut(s)	234
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	2 cut(s)	194, 219
HhaI	GCGC	1 cut(s)	333
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	4 cut(s)	367, 458, 506, 602
HpaII	CCGG	2 cut(s)	194, 219
Hpy188I	TCNGA	6 cut(s)	8, 22, 58, 511, 549, 629
Hpy188III	TCNNGA	2 cut(s)	240, 364
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	93, 514, 559
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	4 cut(s)	135, 148, 236, 586
HpyF3I	CTNAG	5 cut(s)	30, 69, 576, 596, 606
HpySE526I	ACGT	1 cut(s)	342
HspAI	GCGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	115, 184, 259, 490, 616, 620
LguI	GCTCTTC	3 cut(s)	69, 134, 549
LmnI	GCTCC	2 cut(s)	39, 276
LpnPI	CCDG	4 cut(s)	104, 207, 232, 593
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	3 cut(s)	245, 502, 595
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	189, 485
MalI	GATC	6 cut(s)	117, 186, 261, 492, 618, 622
MboI	GATC	6 cut(s)	115, 184, 259, 490, 616, 620
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	129, 544
MluCI	AATT	5 cut(s)	80, 222, 243, 396, 571
MlyI	GAGTC	1 cut(s)	611
MnlI	CCTC	1 cut(s)	250
MroXI	GAANNNNTTC	2 cut(s)	63, 80
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	380
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	2 cut(s)	194, 219
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	6 cut(s)	115, 184, 259, 490, 616, 620
NmeAIII	GCCGAG	1 cut(s)	474
NmuCI	GTSAC	1 cut(s)	485
PciSI	GCTCTTC	3 cut(s)	69, 134, 549
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PdmI	GAANNNNTTC	2 cut(s)	63, 80
PfeI	GAWTC	3 cut(s)	367, 458, 506
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	380
Rsr2I	CGGWCCG	1 cut(s)	18
RsrII	CGGWCCG	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	129
SapI	GCTCTTC	3 cut(s)	69, 134, 549
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	6 cut(s)	115, 184, 259, 490, 616, 620
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	611
SduI	GDGCHC	2 cut(s)	129, 544
SetI	ASST	9 cut(s)	36, 64, 104, 123, 129, 255, 281, 345, 525
SfaNI	GCATC	3 cut(s)	245, 502, 595
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	254, 302
SmoI	CTYRAG	2 cut(s)	254, 302
Sse9I	AATT	5 cut(s)	80, 222, 243, 396, 571
SsiI	CCGC	1 cut(s)	385
SstI	GAGCTC	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	18
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	619
TasI	AATT	5 cut(s)	80, 222, 243, 396, 571
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	3 cut(s)	367, 458, 506
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	6 cut(s)	102, 186, 408, 533, 548, 578
TspGWI	ACGGA	1 cut(s)	470
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	18
XapI	RAATTY	1 cut(s)	571
XmnI	GAANNNNTTC	2 cut(s)	63, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.