Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010342

Physical Location & Seq

Genomic Coordinates Reverse (-)

5293256 .. 5296811

Gene Structure 3556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGCAACGATTCTGCGTCTGTTCACCTTCAAGTTATCGTCTCAATCCCATAACATCAATGGCTACTGGATCCGGTTCACTGATTTGGTTCCGGAAAGGTCTCCGGGTTCACGACAACCCGGCTCTTGAATACGCCTCAAAAGGTTCTGAATTTATGTATCCGGTTTTTGTTATCGACCCGCATTATATGGAGTCAGACCCATCTGCGTTCTCTCCCGGTTCGTCTCGCGCCGGGGTAAACCGGATCCGGTTCTTGCTTGAGAGTCTCAAGGATCTCGATTCTAGCCTGAAGAAACTTGGTTCACGGTTGCTTGTTTTTAAAGGTGAACCTGGCGAAGTACTAGTTCGTTGCTTGCAAGAGTGGAAGGTGAAGAGGCTTTGCTTTGAATATGATACAGATCCGTATTATCAAGCTTTAGATGTTAAGGTTAAGGATTATGCTTCTTCAACTGGAGTTGAGGTTTTCTCTCCAGTGAGCCATACTCTGTTCAATCCCGCACACATTATAGAGAAAAACGGTGGGAAGCCACCTTTGAGTTATCAATCATTTCTGAAGGTTGCTGGGGAGCCCTCATGTGCTAAATCTGAACTTGTGATGTCTTATTCTTCACTTCCTCCAATTGGAGATATTGGAAACCTTGGCATTTCAGAAGTACCATCTCTTGAGGAACTTGGCTACAAAGATGATGAACAAGCTGATTGGACTCCTTTTAGAGGTGGTGAATCAGAAGCCTTAAAAAGATTGACTAAATCAATCAGTGATAAGGCATGGGTGGCAAACTTTGAGAAACCAAAGGGTGATCCATCTGCTTTCTTGAAGCCTGCTACTACAGTTATGTCACCATATTTGAAATTCGGATGCCTTTCTTCGAGGTACTTTTATCAATGCCTTCAAAATATTTATAAGGATGTTAAAAAGCATACATCGCCGCCAGTTTCTCTCCTGGGGCAGTTGTTGTGGCGAGAATTTTTCTATACCACTGCATTTGGAACTCCTAACTTTGACAAAATGAAGGGAAACCGGATCTGCAAACAGATTCCATGGAACGAGGATCATGCTATGTTGGCTGCTTGGAGGGACGGTAAGACAGGATACCCTTGGATTGATGCCATCATGGTTCAGCTTCTGAAATGGGGTTGGATGCACCATCTAGCGCGTCACTGTGTAGCCTGTTTTCTTACTCGTGGGGATCTGTTCATACATTGGGAACAAGGGCGTGATGTGTTTGAGAGACTTCTGATCGATTCAGACTGGGCAATCAACAATGGAAATTGGATGTGGTTATCATGTTCGTCGTTCTTTTACCAGTTCAACCGCATCTACTCTCCTATATCTTTCGGAAAGAAGTATGATCCTGATGGGAAGTACATTAGGCATTTTCTACCGGTACTGAAAGATATGCCAAAGCAATATATATATGAGCCATGGACAGCACCATTGAGCGTTCAAACTAAAGCAAACTGCATAGTCGGGAAGGACTACCCAAAGCCAATGGTATTGCACGATTCAGCAAGCAAGGAGTGCAAGAGGAAGATGGGTGAAGCATATGCATTGAACAAGAAGATGGATGGTAAAGTAGATGAAGAAAATTTGAGGGATTTGAGGAGAAAGCTTCAGAAAGATGAACATGAAGAGTCCAAAATCAGGAACCAACGACCAAAACTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003913 GO:0003914 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0016829 GO:0016830 GO:0050896 GO:0140097

KEGG Pathways

Metabolic & Signaling

ko04710 map04710

Pfam Domains

Protein Families

DNA_photolyase FAD_binding_7

Protein Analysis

556

Amino Acids

63.79

Weight (kDa)

8.94

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_photolyase	PF00875	26 - 186	7.6e-44	DNA photolyase
FAD_binding_7	PF03441	315 - 512	3.3e-75	FAD binding domain of DNA photolyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15620 AT3G15620
fragaria_vesca	FvH4_6g30470 FvH4_6g30470 FvH4_6g30470 FvH4_6g30470 FvH4_6g30470
malus_domestica	MD17G1203600.v1.1
prunus_persica	Prupe.3G078500_v2.0.a1
pyrus_communis	pycom17g20720
rosa_chinensis	RchiOBHm_Chr2g0136821
rosa_laevigata	RLG00000019580
rosa_multiflora	Rmu_sc0001299.1_g000012 Rmu_sc0005272.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107960
rosa_rugosa	Rorug02G0334100 Rorug02G0334200 Rorug02G0334300
rosa_samantha	Rh2AG384400 Rh2DG407900
rosa_wichuraiana	Rw2G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AccII	CGCG	2 cut(s)	228, 1156
AccIII	TCCGGA	1 cut(s)	90
AciI	CCGC	4 cut(s)	179, 495, 929, 1315
AcsI	RAATTY	4 cut(s)	149, 851, 965, 1588
AcuI	CTGAAG	3 cut(s)	308, 572, 1598
AfaI	GTAC	5 cut(s)	339, 654, 875, 1367, 1389
AfiI	CCNNNNNNNGG	3 cut(s)	620, 713, 1644
AgeI	ACCGGT	1 cut(s)	1384
AhlI	ACTAGT	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	328, 942
AluBI	AGCT	4 cut(s)	413, 695, 1123, 1612
AluI	AGCT	4 cut(s)	413, 695, 1123, 1612
Alw26I	GTCTC	5 cut(s)	44, 104, 228, 269, 1225
AlwNI	CAGNNNCTG	1 cut(s)	1126
Aor13HI	TCCGGA	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	1067
ApoI	RAATTY	4 cut(s)	149, 851, 965, 1588
AsiGI	ACCGGT	1 cut(s)	1384
AspLEI	GCGC	2 cut(s)	230, 1156
AsuC2I	CCSGG	4 cut(s)	104, 119, 216, 232
AsuHPI	GGTGA	7 cut(s)	15, 335, 379, 731, 809, 831, 1550
BamHI	GGATCC	2 cut(s)	68, 243
BanII	GRGCYC	1 cut(s)	570
BauI	CACGAG	1 cut(s)	1182
BbvI	GCAGC	1 cut(s)	1054
BccI	CCATC	9 cut(s)	208, 664, 811, 1118, 1155, 1352, 1528, 1558, 1562
BcgI	CGANNNNNNTGC	2 cut(s)	1037, 1071
BciT130I	CCWGG	2 cut(s)	330, 944
BciVI	GTATCC	2 cut(s)	168, 1085
BcnI	CCSGG	4 cut(s)	104, 119, 216, 232
BcoDI	GTCTC	5 cut(s)	44, 104, 228, 269, 1225
BcuI	ACTAGT	1 cut(s)	340
BfaI	CTAG	3 cut(s)	282, 341, 1151
BfmI	CTRYAG	1 cut(s)	828
BfuI	GTATCC	2 cut(s)	168, 1085
BisI	GCNGC	2 cut(s)	929, 1068
BlsI	GCNGC	2 cut(s)	930, 1069
BmcAI	AGTACT	1 cut(s)	339
Bme1390I	CCNGG	6 cut(s)	104, 119, 216, 232, 330, 944
BmiI	GGNNCC	5 cut(s)	70, 89, 245, 567, 1649
BmrFI	CCNGG	6 cut(s)	104, 119, 216, 232, 330, 944
BmrI	ACTGGG	1 cut(s)	1261
BmsI	GCATC	4 cut(s)	848, 1096, 1131, 1326
BmuI	ACTGGG	1 cut(s)	1261
BplI	GAGNNNNNCTC	4 cut(s)	449, 481, 466, 498
BpmI	CTGGAG	2 cut(s)	453, 471
BpuEI	CTTGAG	3 cut(s)	251, 278, 683
BpuMI	CCSGG	4 cut(s)	104, 119, 216, 232
Bsa29I	ATCGAT	1 cut(s)	1242
BsaBI	GATNNNNATC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	6 cut(s)	231, 637, 943, 1040, 1097, 1424
BsaWI	WCCGGW	7 cut(s)	71, 90, 160, 240, 246, 1020, 1384
BsaXI	ACNNNNNCTCC	4 cut(s)	444, 474, 1066, 1096
Bsc4I	CCNNNNNNNGG	3 cut(s)	620, 713, 1644
Bse118I	RCCGGY	1 cut(s)	1384
Bse1I	ACTGG	6 cut(s)	70, 454, 470, 932, 1256, 1306
Bse8I	GATNNNNATC	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	330, 944
BseCI	ATCGAT	1 cut(s)	1242
BseDI	CCNNGG	6 cut(s)	231, 637, 943, 1040, 1097, 1424
BseGI	GGATG	5 cut(s)	863, 913, 1146, 1281, 1573
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	3 cut(s)	620, 713, 1644
BseNI	ACTGG	6 cut(s)	70, 454, 470, 932, 1256, 1306
BseRI	GAGGAG	1 cut(s)	1618
BseXI	GCAGC	1 cut(s)	1054
BseYI	CCCAGC	1 cut(s)	560
Bsh1236I	CGCG	2 cut(s)	228, 1156
BshTI	ACCGGT	1 cut(s)	1384
BshVI	ATCGAT	1 cut(s)	1242
BslFI	GGGAC	1 cut(s)	1091
BslI	CCNNNNNNNGG	3 cut(s)	620, 713, 1644
BsmAI	GTCTC	5 cut(s)	44, 104, 228, 269, 1225
BsmBI	CGTCTC	2 cut(s)	44, 228
BsmFI	GGGAC	1 cut(s)	1091
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp13I	TCCGGA	1 cut(s)	90
Bsp19I	CCATGG	2 cut(s)	1040, 1424
BspACI	CCGC	4 cut(s)	179, 495, 929, 1315
BspDI	ATCGAT	1 cut(s)	1242
BspEI	TCCGGA	1 cut(s)	90
BspFNI	CGCG	2 cut(s)	228, 1156
BspLI	GGNNCC	5 cut(s)	70, 89, 245, 567, 1649
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	1384
BsrI	ACTGG	6 cut(s)	70, 454, 470, 932, 1256, 1306
BssAI	RCCGGY	1 cut(s)	1384
BssECI	CCNNGG	6 cut(s)	231, 637, 943, 1040, 1097, 1424
BssSI	CACGAG	1 cut(s)	1182
BssT1I	CCWWGG	4 cut(s)	637, 1040, 1097, 1424
Bst2BI	CACGAG	1 cut(s)	1182
Bst2UI	CCWGG	2 cut(s)	330, 944
Bst4CI	ACNGT	5 cut(s)	306, 518, 832, 1082, 1163
Bst6I	CTCTTC	2 cut(s)	365, 1626
BstAPI	GCANNNNNTGC	1 cut(s)	1521
BstC8I	GCNNGC	3 cut(s)	353, 822, 1513
BstDSI	CCRYGG	2 cut(s)	1040, 1424
BstENI	CCTNNNNNAGG	1 cut(s)	711
BstF5I	GGATG	5 cut(s)	863, 913, 1146, 1281, 1573
BstFNI	CGCG	2 cut(s)	228, 1156
BstHHI	GCGC	2 cut(s)	230, 1156
BstMAI	GTCTC	5 cut(s)	44, 104, 228, 269, 1225
BstMWI	GCNNNNNNNGC	4 cut(s)	773, 925, 1064, 1521
BstNI	CCWGG	2 cut(s)	330, 944
BstSCI	CCNGG	6 cut(s)	102, 117, 214, 230, 328, 942
BstSFI	CTRYAG	1 cut(s)	828
BstUI	CGCG	2 cut(s)	228, 1156
BstV1I	GCAGC	1 cut(s)	1054
BstX2I	RGATCY	6 cut(s)	68, 243, 271, 397, 1023, 1189
BstYI	RGATCY	6 cut(s)	68, 243, 271, 397, 1023, 1189
Bsu15I	ATCGAT	1 cut(s)	1242
BsuI	GTATCC	2 cut(s)	168, 1085
BsuTUI	ATCGAT	1 cut(s)	1242
BtgI	CCRYGG	2 cut(s)	1040, 1424
BtgZI	GCGATG	1 cut(s)	909
BtsCI	GGATG	5 cut(s)	863, 913, 1146, 1281, 1573
BtsI	GCAGTG	1 cut(s)	978
BtsIMutI	CAGTG	5 cut(s)	77, 477, 763, 978, 1159
Cac8I	GCNNGC	3 cut(s)	353, 822, 1513
CaiI	CAGNNNCTG	1 cut(s)	1126
CfoI	GCGC	2 cut(s)	230, 1156
Cfr10I	RCCGGY	1 cut(s)	1384
ClaI	ATCGAT	1 cut(s)	1242
CseI	GACGC	2 cut(s)	4, 1145
Csp6I	GTAC	5 cut(s)	338, 653, 874, 1366, 1388
CspAI	ACCGGT	1 cut(s)	1384
CspCI	CAANNNNNGTGG	2 cut(s)	967, 1002
CviAII	CATG	8 cut(s)	573, 768, 1041, 1055, 1114, 1287, 1425, 1628
CviQI	GTAC	5 cut(s)	338, 653, 874, 1366, 1388
DraI	TTTAAA	1 cut(s)	319
Eam1104I	CTCTTC	2 cut(s)	365, 1626
EarI	CTCTTC	2 cut(s)	365, 1626
Eco130I	CCWWGG	4 cut(s)	637, 1040, 1097, 1424
Eco24I	GRGCYC	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	104
Eco57I	CTGAAG	3 cut(s)	308, 572, 1598
EcoNI	CCTNNNNNAGG	1 cut(s)	711
EcoRII	CCWGG	2 cut(s)	328, 942
EcoT14I	CCWWGG	4 cut(s)	637, 1040, 1097, 1424
EcoT22I	ATGCAT	1 cut(s)	1552
EcoT38I	GRGCYC	1 cut(s)	570
ErhI	CCWWGG	4 cut(s)	637, 1040, 1097, 1424
Esp3I	CGTCTC	2 cut(s)	44, 228
FaeI	CATG	8 cut(s)	576, 771, 1044, 1058, 1117, 1290, 1428, 1631
FaqI	GGGAC	1 cut(s)	1091
FatI	CATG	8 cut(s)	572, 767, 1040, 1054, 1113, 1286, 1424, 1627
FauI	CCCGC	2 cut(s)	186, 502
FauNDI	CATATG	1 cut(s)	1546
Fnu4HI	GCNGC	2 cut(s)	929, 1068
FokI	GGATG	5 cut(s)	870, 920, 1153, 1288, 1580
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	2 cut(s)	929, 1068
FspBI	CTAG	3 cut(s)	282, 341, 1151
GlaI	GCGC	2 cut(s)	229, 1155
GluI	GCNGC	2 cut(s)	929, 1068
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	2 cut(s)	453, 471
HgaI	GACGC	2 cut(s)	4, 1145
HhaI	GCGC	2 cut(s)	230, 1156
Hin1II	CATG	8 cut(s)	576, 771, 1044, 1058, 1117, 1290, 1428, 1631
Hin6I	GCGC	2 cut(s)	228, 1154
HinP1I	GCGC	2 cut(s)	228, 1154
HindIII	AAGCTT	2 cut(s)	411, 1610
HphI	GGTGA	7 cut(s)	15, 335, 379, 731, 809, 831, 1550
Hpy166II	GTNNAC	6 cut(s)	23, 77, 109, 238, 302, 326
Hpy188III	TCNNGA	9 cut(s)	91, 110, 125, 275, 662, 814, 1355, 1471, 1645
Hpy8I	GTNNAC	6 cut(s)	23, 77, 109, 238, 302, 326
Hpy99I	CGWCG	1 cut(s)	1297
HpyAV	CCTTC	6 cut(s)	36, 358, 547, 899, 1006, 1468
HpyCH4III	ACNGT	5 cut(s)	306, 518, 832, 1082, 1163
HpyCH4V	TGCA	9 cut(s)	4, 355, 983, 1029, 1144, 1464, 1501, 1524, 1550
HpyF10VI	GCNNNNNNNGC	4 cut(s)	773, 925, 1064, 1521
Hsp92II	CATG	8 cut(s)	576, 771, 1044, 1058, 1117, 1290, 1428, 1631
HspAI	GCGC	2 cut(s)	228, 1154
Kpn2I	TCCGGA	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	565
Lsp1109I	GCAGC	1 cut(s)	1054
LweI	GCATC	4 cut(s)	848, 1096, 1131, 1326
MaeI	CTAG	3 cut(s)	282, 341, 1151
MaeIII	GTNAC	2 cut(s)	837, 1157
MboII	GAAGA	9 cut(s)	301, 382, 435, 597, 858, 1543, 1573, 1595, 1643
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	6 cut(s)	68, 243, 271, 397, 1023, 1189
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	6 cut(s)	149, 618, 851, 965, 1270, 1588
MlyI	GAGTC	4 cut(s)	200, 271, 697, 1643
MmeI	TCCRAC	1 cut(s)	1118
Mph1103I	ATGCAT	1 cut(s)	1552
MroI	TCCGGA	1 cut(s)	90
MseI	TTAA	5 cut(s)	318, 423, 429, 734, 912
MspR9I	CCNGG	6 cut(s)	104, 119, 216, 232, 330, 944
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	2 cut(s)	330, 944
MvnI	CGCG	2 cut(s)	228, 1156
MwoI	GCNNNNNNNGC	4 cut(s)	773, 925, 1064, 1521
NciI	CCSGG	4 cut(s)	104, 119, 216, 232
NcoI	CCATGG	2 cut(s)	1040, 1424
NdeI	CATATG	1 cut(s)	1546
NlaIII	CATG	8 cut(s)	576, 771, 1044, 1058, 1117, 1290, 1428, 1631
NlaIV	GGNNCC	5 cut(s)	70, 89, 245, 567, 1649
NmuCI	GTSAC	2 cut(s)	837, 1157
NsiI	ATGCAT	1 cut(s)	1552
PfeI	GAWTC	6 cut(s)	9, 278, 722, 1036, 1244, 1505
PinAI	ACCGGT	1 cut(s)	1384
PkrI	GCNGC	2 cut(s)	930, 1069
PleI	GAGTC	4 cut(s)	199, 270, 697, 1642
PpsI	GAGTC	4 cut(s)	199, 270, 697, 1642
PsiI	TTATAA	1 cut(s)	903
Psp6I	CCWGG	2 cut(s)	328, 942
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	2 cut(s)	328, 942
PspN4I	GGNNCC	5 cut(s)	70, 89, 245, 567, 1649
PstNI	CAGNNNCTG	1 cut(s)	1126
PsuI	RGATCY	6 cut(s)	68, 243, 271, 397, 1023, 1189
RsaI	GTAC	5 cut(s)	339, 654, 875, 1367, 1389
RsaNI	GTAC	5 cut(s)	338, 653, 874, 1366, 1388
SaqAI	TTAA	5 cut(s)	318, 423, 429, 734, 912
SatI	GCNGC	2 cut(s)	929, 1068
ScaI	AGTACT	1 cut(s)	339
SchI	GAGTC	4 cut(s)	200, 271, 697, 1643
ScrFI	CCNGG	6 cut(s)	104, 119, 216, 232, 330, 944
SduI	GDGCHC	1 cut(s)	570
SfaNI	GCATC	4 cut(s)	848, 1096, 1131, 1326
SfcI	CTRYAG	1 cut(s)	828
SmlI	CTYRAG	3 cut(s)	257, 266, 662
SmoI	CTYRAG	3 cut(s)	257, 266, 662
SpeI	ACTAGT	1 cut(s)	340
Sse9I	AATT	6 cut(s)	149, 618, 851, 965, 1270, 1588
SsiI	CCGC	4 cut(s)	179, 495, 929, 1315
SspI	AATATT	1 cut(s)	898
SspMI	CTAG	3 cut(s)	282, 341, 1151
StyD4I	CCNGG	6 cut(s)	102, 117, 214, 230, 328, 942
StyI	CCWWGG	4 cut(s)	637, 1040, 1097, 1424
TaaI	ACNGT	5 cut(s)	306, 518, 832, 1082, 1163
TaqI	TCGA	4 cut(s)	174, 276, 869, 1242
TasI	AATT	6 cut(s)	149, 618, 851, 965, 1270, 1588
TatI	WGTACW	2 cut(s)	337, 1365
TauI	GCSGC	1 cut(s)	931
TfiI	GAWTC	6 cut(s)	9, 278, 722, 1036, 1244, 1505
Tru1I	TTAA	5 cut(s)	318, 423, 429, 734, 912
Tru9I	TTAA	5 cut(s)	318, 423, 429, 734, 912
TscAI	CASTG	5 cut(s)	84, 477, 763, 985, 1166
TseFI	GTSAC	2 cut(s)	837, 1157
TseI	GCWGC	1 cut(s)	1067
Tsp45I	GTSAC	2 cut(s)	837, 1157
TspDTI	ATGAA	6 cut(s)	702, 1025, 1186, 1596, 1638, 1644
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	5 cut(s)	84, 477, 763, 985, 1166
XagI	CCTNNNNNAGG	1 cut(s)	711
XapI	RAATTY	4 cut(s)	149, 851, 965, 1588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	3 cut(s)	282, 341, 1151
ZrmI	AGTACT	1 cut(s)	339
Zsp2I	ATGCAT	1 cut(s)	1552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.