Rorug02G0334100

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010342
Physical Location & Seq
Forward (+)
41449710 .. 41450217
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0334100.1

Sequence Viewer

Length: 429 bp
ATGTTGTTGCGGGCGGAGTATGACGGTGTCTCCGCTCTCTATGCGGCTCCTCTCCATCTCATGGAGGTTTGGGTGGCGGTAAAAGGGGGTAGTGCAGAGGAAGGACTGCAGGTGGTAGCGGTGATTCAGGATATTCGTCAGAGGATTTGGGCACGGCGGCTGTTTGAGTTCTCATCAACTGTCTTGGTGATGGTGGAACTTTATTATGAGAAGTGTCATGGTCTGTGTGCAGCGTGTGGGTTCTTTGGTCATAGAGGTAGTCCCTGTGACAAGCGGTTGGAGGTGGAGGTGGAGGTGCTGTCGCTGGCGGTATCGGGCCGAGATGGATTGGAACCGGGCAGTGAGGGGATACAATCAGAATTTGGACTACATGTGGCGGGGGTCTTGGGGTCGGAGGTGCTCGCTATGGTGCCTACGGGACCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003913 GO:0003914 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0016829 GO:0016830 GO:0050896 GO:0140097
KEGG Pathways
Metabolic & Signaling
ko04710 map04710
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

142

Amino Acids

15.31

Weight (kDa)

5.02

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 44 - 91 4.4e-08 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 100
AccB1I GGYRCC 1 cut(s) 409
AccB7I CCANNNNNTGG 1 cut(s) 61
AccBSI CCGCTC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 61
AflIII ACRYGT 1 cut(s) 370
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 316, 419
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 133, 199
AvaII GGWCC 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 242
BccI CCATC 3 cut(s) 63, 184, 317
BceAI ACGGC 1 cut(s) 170
BciVI GTATCC 1 cut(s) 342
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 100
BfuI GTATCC 1 cut(s) 342
BisI GCNGC 3 cut(s) 45, 158, 231
BlsI GCNGC 3 cut(s) 46, 159, 232
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 316, 419
BmiI GGNNCC 4 cut(s) 48, 333, 411, 420
BmrFI CCNGG 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 336
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 284, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 1 cut(s) 242
BsgI GTGCAG 2 cut(s) 114, 249
BshFI GGCC 1 cut(s) 318
BshNI GGYRCC 1 cut(s) 409
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 154, 402
BspANI GGCC 1 cut(s) 318
BspLI GGNNCC 4 cut(s) 48, 333, 411, 420
BspMAI CTGCAG 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 409
BsrBI CCGCTC 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 26, 181
BstC8I GCNNGC 3 cut(s) 12, 306, 402
BstDEI CTNAG 1 cut(s) 426
BstMAI GTCTC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 242
BsuI GTATCC 1 cut(s) 342
BsuRI GGCC 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 346
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 3 cut(s) 12, 306, 402
Cfr13I GGNCC 2 cut(s) 316, 419
CviAII CATG 3 cut(s) 61, 218, 371
CviJI RGCY 3 cut(s) 47, 160, 318
CviKI_1 RGCY 3 cut(s) 47, 160, 318
DdeI CTNAG 1 cut(s) 426
EciI GGCGGA 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 419
EcoO109I RGGNCCY 1 cut(s) 419
FaeI CATG 3 cut(s) 64, 221, 374
FaiI YATR 8 cut(s) 21, 42, 62, 207, 219, 252, 372, 407
FaqI GGGAC 1 cut(s) 246
FatI CATG 3 cut(s) 60, 217, 370
FauI CCCGC 2 cut(s) 3, 370
Fnu4HI GCNGC 3 cut(s) 45, 158, 231
Fsp4HI GCNGC 3 cut(s) 45, 158, 231
GluI GCNGC 3 cut(s) 45, 158, 231
HaeIII GGCC 1 cut(s) 318
HapII CCGG 1 cut(s) 335
Hin1II CATG 3 cut(s) 64, 221, 374
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 335
HphI GGTGA 2 cut(s) 133, 199
Hpy188I TCNGA 3 cut(s) 141, 358, 394
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 26, 181
HpyCH4V TGCA 3 cut(s) 95, 109, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 3 cut(s) 64, 221, 374
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 95, 113, 277, 290, 348
Lsp1109I GCAGC 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 266
MbiI CCGCTC 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 154, 402
MluCI AATT 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 258, 372
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 336
NlaIII CATG 3 cut(s) 64, 221, 374
NlaIV GGNNCC 4 cut(s) 48, 333, 411, 420
NmeAIII GCCGAG 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 266
NspI RCATGY 1 cut(s) 374
PaqCI CACCTGC 1 cut(s) 100
PciI ACATGT 1 cut(s) 370
PfeI GAWTC 1 cut(s) 124
PflFI GACNNNGTC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 3 cut(s) 46, 159, 232
PpuMI RGGWCCY 1 cut(s) 419
PscI ACATGT 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 419
PspN4I GGNNCC 4 cut(s) 48, 333, 411, 420
PspPI GGNCC 2 cut(s) 316, 419
PspPPI RGGWCCY 1 cut(s) 419
PstI CTGCAG 1 cut(s) 111
PsyI GACNNNGTC 1 cut(s) 26
SatI GCNGC 3 cut(s) 45, 158, 231
Sau96I GGNCC 2 cut(s) 316, 419
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 2 cut(s) 154, 402
SetI ASST 8 cut(s) 69, 114, 259, 285, 291, 297, 399, 424
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 419
Sse9I AATT 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 26, 181
TasI AATT 1 cut(s) 359
TauI GCSGC 2 cut(s) 47, 160
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 266
TspRI CASTG 1 cut(s) 346
Tth111I GACNNNGTC 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 1 cut(s) 359
XceI RCATGY 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.