Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010342

Physical Location & Seq

Genomic Coordinates Forward (+)

41529396 .. 41530643

Gene Structure 1248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0334300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGAGGCAAGGTATTAGTTGGAGGATTGGTAATGGGAATTCTATTTCCTTTTGGAATGACAATTGGTCTGGTATTGGTATTCTATGTGATCAAGCTATTGATCAATCAATGGTTGATAAAGACCTCATGGTTCAAGATTTTTGGATTGGAAAAGAGTGGGATGCCACCCTGCTTTTTGCATGTCTTCCTTCTGAAATATCTGAGAAAATCTTGAGTATCCCAATTGGCCTATCAAACTCTCCTGATAAACCAATCTGGTCACACTCTACTACTGGTAAGTTCTCACTTAAGAGTGCTTATTATGGAGTTATCAATCCTACTATGAGGAACAATAGTATTTGGAAGAGTATCTGGCACCTCAACATACCTCCAAAACTCAAGATTTTTACATGGTTGTTTGTGCATAAAAGATTGCTCACAAATGTGAACAGAGCTAGGAGACACCTAACCATTGATTCTAGTTGTCATTGCTGTCCTGGTGAACCTGAAACCATGCTTCACCTCTTCAGAGATTGTCCCCAAGCTATGGCCATTTGGAAGTGTTTCGATATCCCTACCACTATCTCCAGAACCTTCATGTTAGATTGGGATGGTTGGATATCTGCAAGTATTCTTCAAAAAAACTGTAAGTGCATTGGCTTCAATTGGTCCCAACTTTTCATTTTCATCTGTTGGTTTATTTGGAAGTGGAGGAATAAGGTAATTTTTGATGCAAACTTTAGCTTTCCTTATAATCCTACTGCTAATATTACCCAATATGTTACTGAATGGATCAATGCTAATCAAAGGAGTGAGGTGCATCCTAATGTGAGAACTGAGTTAATTGGTTGGCAAAATCCTCCACCTGGCTACTTTAAACTCAATGTTAATGGATCTAGAACAAATGGGGGTCTGATTGGTGCAGGTGGAGTTAATAGAGATGATTTTGGATCTTGGATTGCTGGCTTCAAGAGAAATATTGGGAAAGGGGAGGTTCTCCAGGCTGAGGCATGGGGCCTTTTTTCTGGTCTGCAGATGGCTATTGCTTGTCAAATCAAGAAAATAATGGTAGAATCTGACTCTGCTGTGCTTATTAATCTCTTGCATAGTACTGAAGCAGACCTTCACCCTTTGGGAACAATCATATCCAACTGCAAAATTTTGCTGCAGTCTTTTGACCATTATACAATTAATCACATACATAGAGAAAGGAACATGGTGGCTGACATTCTTGCCAAGACAAGCACCGATCAAGACTTGGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003913 GO:0003914 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0016829 GO:0016830 GO:0050896 GO:0140097

KEGG Pathways

Metabolic & Signaling

ko04710 map04710

Pfam Domains

Protein Families

DNA_photolyase FAD_binding_7

Protein Analysis

415

Amino Acids

47.3

Weight (kDa)

8.4

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	94 - 179	1.2e-21	zinc-binding in reverse transcriptase
RVT_3	PF13456	295 - 407	1.7e-23	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15620 AT3G15620
fragaria_vesca	FvH4_6g30470 FvH4_6g30470 FvH4_6g30470 FvH4_6g30470 FvH4_6g30470
malus_domestica	MD17G1203600.v1.1
prunus_persica	Prupe.3G078500_v2.0.a1
pyrus_communis	pycom17g20720
rosa_chinensis	RchiOBHm_Chr2g0136821
rosa_laevigata	RLG00000019580
rosa_multiflora	Rmu_sc0001299.1_g000012 Rmu_sc0005272.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107960
rosa_rugosa	Rorug02G0334100 Rorug02G0334200 Rorug02G0334300
rosa_samantha	Rh2AG384400 Rh2DG407900
rosa_wichuraiana	Rw2G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AarI	CACCTGC	1 cut(s)	893
Acc36I	ACCTGC	1 cut(s)	893
AccB1I	GGYRCC	1 cut(s)	354
AccB7I	CCANNNNNTGG	1 cut(s)	526
AclWI	GGATC	3 cut(s)	779, 880, 937
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	3 cut(s)	37, 1137, 1242
AcuI	CTGAAG	2 cut(s)	490, 1113
AfaI	GTAC	1 cut(s)	1090
AfiI	CCNNNNNNNGG	3 cut(s)	526, 845, 985
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	4 cut(s)	134, 617, 643, 949
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	3 cut(s)	475, 844, 978
AleI	CACNNNNGTG	1 cut(s)	422
AluBI	AGCT	4 cut(s)	95, 434, 524, 723
AluI	AGCT	4 cut(s)	95, 434, 524, 723
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	3 cut(s)	779, 880, 937
AoxI	GGCC	3 cut(s)	226, 528, 994
ApeKI	GCWGC	1 cut(s)	1144
ApoI	RAATTY	3 cut(s)	37, 1137, 1242
AseI	ATTAAT	2 cut(s)	1074, 1170
Asp700I	GAANNNNTTC	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	648, 994
AsuHPI	GGTGA	3 cut(s)	491, 491, 1097
AvaII	GGWCC	1 cut(s)	648
BalI	TGGCCA	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	984
BbvI	GCAGC	1 cut(s)	1131
BccI	CCATC	2 cut(s)	584, 1009
BciT130I	CCWGG	3 cut(s)	477, 846, 980
BciVI	GTATCC	1 cut(s)	227
BclI	TGATCA	2 cut(s)	88, 100
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	3 cut(s)	435, 459, 876
BfmI	CTRYAG	2 cut(s)	1010, 1145
BfrI	CTTAAG	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	893
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	1145
BlsI	GCNGC	1 cut(s)	1146
BmcAI	AGTACT	1 cut(s)	1090
Bme1390I	CCNGG	3 cut(s)	477, 846, 980
Bme18I	GGWCC	1 cut(s)	648
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	648, 994
BmiI	GGNNCC	3 cut(s)	356, 650, 995
BmrFI	CCNGG	3 cut(s)	477, 846, 980
BmsI	GCATC	3 cut(s)	151, 700, 808
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	2 cut(s)	550, 962
Bpu10I	CCTNAGC	1 cut(s)	984
BpuEI	CTTGAG	2 cut(s)	232, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	3 cut(s)	526, 845, 985
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	466
BseBI	CCWGG	3 cut(s)	477, 846, 980
BseGI	GGATG	3 cut(s)	166, 595, 799
BseLI	CCNNNNNNNGG	3 cut(s)	526, 845, 985
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	3 cut(s)	192, 807, 975
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	1131
BsgI	GTGCAG	1 cut(s)	921
BshFI	GGCC	3 cut(s)	228, 530, 996
BshNI	GGYRCC	1 cut(s)	354
BslFI	GGGAC	2 cut(s)	501, 634
BslI	CCNNNNNNNGG	3 cut(s)	526, 845, 985
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	2 cut(s)	501, 634
BsnI	GGCC	3 cut(s)	228, 530, 996
Bsp143I	GATC	6 cut(s)	88, 100, 771, 872, 929, 1228
BspANI	GGCC	3 cut(s)	228, 530, 996
BspCNI	CTCAG	3 cut(s)	193, 808, 976
BspLI	GGNNCC	3 cut(s)	356, 650, 995
BspMAI	CTGCAG	2 cut(s)	1014, 1149
BspMI	ACCTGC	1 cut(s)	893
BspPI	GGATC	3 cut(s)	779, 880, 937
BspT107I	GGYRCC	1 cut(s)	354
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	6 cut(s)	88, 100, 771, 872, 929, 1228
Bst2UI	CCWGG	3 cut(s)	477, 846, 980
Bst4CI	ACNGT	1 cut(s)	626
Bst6I	CTCTTC	2 cut(s)	338, 509
BstAFI	CTTAAG	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	943
BstDEI	CTNAG	3 cut(s)	201, 816, 984
BstF5I	GGATG	3 cut(s)	166, 595, 799
BstKTI	GATC	6 cut(s)	91, 103, 774, 875, 932, 1231
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	6 cut(s)	88, 100, 771, 872, 929, 1228
BstNI	CCWGG	3 cut(s)	477, 846, 980
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	3 cut(s)	475, 844, 978
BstSFI	CTRYAG	2 cut(s)	1010, 1145
BstV1I	GCAGC	1 cut(s)	1131
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	2 cut(s)	872, 929
BstYI	RGATCY	2 cut(s)	872, 929
BsuI	GTATCC	1 cut(s)	227
BsuRI	GGCC	3 cut(s)	228, 530, 996
BtsCI	GGATG	3 cut(s)	166, 595, 799
BveI	ACCTGC	1 cut(s)	893
Cac8I	GCNNGC	1 cut(s)	943
Cfr13I	GGNCC	2 cut(s)	648, 994
Csp6I	GTAC	1 cut(s)	1089
CviAII	CATG	7 cut(s)	127, 180, 390, 493, 577, 990, 1195
CviQI	GTAC	1 cut(s)	1089
DdeI	CTNAG	3 cut(s)	201, 816, 984
DpnI	GATC	6 cut(s)	90, 102, 773, 874, 931, 1230
DpnII	GATC	6 cut(s)	88, 100, 771, 872, 929, 1228
DraI	TTTAAA	1 cut(s)	856
DriI	GACNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	2 cut(s)	338, 509
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EarI	CTCTTC	2 cut(s)	338, 509
Eco32I	GATATC	2 cut(s)	550, 600
Eco47I	GGWCC	1 cut(s)	648
Eco57I	CTGAAG	2 cut(s)	490, 1113
EcoO109I	RGGNCCY	1 cut(s)	994
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	3 cut(s)	475, 844, 978
EcoRV	GATATC	2 cut(s)	550, 600
FaeI	CATG	7 cut(s)	130, 183, 393, 496, 580, 993, 1198
FalI	AAGNNNNNCTT	2 cut(s)	1086, 1118
FaqI	GGGAC	2 cut(s)	501, 634
FatI	CATG	7 cut(s)	126, 179, 389, 492, 576, 989, 1194
FbaI	TGATCA	2 cut(s)	88, 100
Fnu4HI	GCNGC	1 cut(s)	1145
FokI	GGATG	3 cut(s)	173, 602, 786
Fsp4HI	GCNGC	1 cut(s)	1145
FspBI	CTAG	3 cut(s)	435, 459, 876
GluI	GCNGC	1 cut(s)	1145
GsuI	CTGGAG	2 cut(s)	550, 962
HaeIII	GGCC	3 cut(s)	228, 530, 996
Hin1II	CATG	7 cut(s)	130, 183, 393, 496, 580, 993, 1198
HinfI	GANTC	3 cut(s)	455, 1052, 1058
HphI	GGTGA	3 cut(s)	491, 491, 1097
Hpy166II	GTNNAC	2 cut(s)	427, 482
Hpy188I	TCNGA	5 cut(s)	193, 202, 509, 894, 1057
Hpy188III	TCNNGA	9 cut(s)	134, 211, 242, 379, 567, 876, 949, 1036, 1232
Hpy8I	GTNNAC	2 cut(s)	427, 482
HpyAV	CCTTC	3 cut(s)	198, 583, 1112
HpyCH4III	ACNGT	1 cut(s)	626
HpyF3I	CTNAG	3 cut(s)	201, 816, 984
Hsp92II	CATG	7 cut(s)	130, 183, 393, 496, 580, 993, 1198
Ksp22I	TGATCA	2 cut(s)	88, 100
Kzo9I	GATC	6 cut(s)	88, 100, 771, 872, 929, 1228
Lsp1109I	GCAGC	1 cut(s)	1131
LweI	GCATC	3 cut(s)	151, 700, 808
MaeI	CTAG	3 cut(s)	435, 459, 876
MaeIII	GTNAC	2 cut(s)	258, 760
MalI	GATC	6 cut(s)	90, 102, 773, 874, 931, 1230
MboI	GATC	6 cut(s)	88, 100, 771, 872, 929, 1228
MboII	GAAGA	4 cut(s)	176, 355, 496, 605
MfeI	CAATTG	3 cut(s)	61, 222, 643
MflI	RGATCY	2 cut(s)	872, 929
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	9 cut(s)	37, 61, 222, 643, 702, 822, 1137, 1167, 1242
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	1052
MmeI	TCCRAC	2 cut(s)	575, 1152
Mox20I	TGGCCA	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	7 cut(s)	288, 821, 855, 867, 912, 1074, 1170
MslI	CAYNNNNRTG	2 cut(s)	422, 804
Msp20I	TGGCCA	1 cut(s)	530
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	3 cut(s)	477, 846, 980
MunI	CAATTG	3 cut(s)	61, 222, 643
MvaI	CCWGG	3 cut(s)	477, 846, 980
NdeII	GATC	6 cut(s)	88, 100, 771, 872, 929, 1228
NlaIII	CATG	7 cut(s)	130, 183, 393, 496, 580, 993, 1198
NlaIV	GGNNCC	3 cut(s)	356, 650, 995
NmuCI	GTSAC	1 cut(s)	258
NspI	RCATGY	1 cut(s)	183
OliI	CACNNNNGTG	1 cut(s)	422
PaqCI	CACCTGC	1 cut(s)	893
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	2 cut(s)	455, 1052
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	1 cut(s)	1146
PleI	GAGTC	1 cut(s)	1052
PpsI	GAGTC	1 cut(s)	1052
PshBI	ATTAAT	2 cut(s)	1074, 1170
PsiI	TTATAA	1 cut(s)	732
Psp6I	CCWGG	3 cut(s)	475, 844, 978
PspGI	CCWGG	3 cut(s)	475, 844, 978
PspN4I	GGNNCC	3 cut(s)	356, 650, 995
PspPI	GGNCC	2 cut(s)	648, 994
PstI	CTGCAG	2 cut(s)	1014, 1149
PsuI	RGATCY	2 cut(s)	872, 929
RsaI	GTAC	1 cut(s)	1090
RsaNI	GTAC	1 cut(s)	1089
RseI	CAYNNNNRTG	2 cut(s)	422, 804
SaqAI	TTAA	7 cut(s)	288, 821, 855, 867, 912, 1074, 1170
SatI	GCNGC	1 cut(s)	1145
Sau3AI	GATC	6 cut(s)	88, 100, 771, 872, 929, 1228
Sau96I	GGNCC	2 cut(s)	648, 994
ScaI	AGTACT	1 cut(s)	1090
SchI	GAGTC	1 cut(s)	1052
ScrFI	CCNGG	3 cut(s)	477, 846, 980
SfaNI	GCATC	3 cut(s)	151, 700, 808
SfcI	CTRYAG	2 cut(s)	1010, 1145
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	2 cut(s)	422, 804
SmlI	CTYRAG	3 cut(s)	211, 287, 377
SmoI	CTYRAG	3 cut(s)	211, 287, 377
Sse9I	AATT	9 cut(s)	37, 61, 222, 643, 702, 822, 1137, 1167, 1242
SspI	AATATT	2 cut(s)	748, 958
SspMI	CTAG	3 cut(s)	435, 459, 876
StyD4I	CCNGG	3 cut(s)	475, 844, 978
TaaI	ACNGT	1 cut(s)	626
TaqI	TCGA	1 cut(s)	546
TasI	AATT	9 cut(s)	37, 61, 222, 643, 702, 822, 1137, 1167, 1242
TatI	WGTACW	1 cut(s)	1088
TfiI	GAWTC	2 cut(s)	455, 1052
Tru1I	TTAA	7 cut(s)	288, 821, 855, 867, 912, 1074, 1170
Tru9I	TTAA	7 cut(s)	288, 821, 855, 867, 912, 1074, 1170
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	1 cut(s)	1144
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	3 cut(s)	565, 649, 655
Van91I	CCANNNNNTGG	1 cut(s)	526
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	648
VspI	ATTAAT	2 cut(s)	1074, 1170
XapI	RAATTY	3 cut(s)	37, 1137, 1242
XbaI	TCTAGA	1 cut(s)	875
XceI	RCATGY	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	3 cut(s)	435, 459, 876
ZrmI	AGTACT	1 cut(s)	1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.