Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014585

Physical Location & Seq

Genomic Coordinates Forward (+)

5358601 .. 5361185

Gene Structure 2585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCTTCTCTTCTAACAAAACCCAAACCCGTTTTCCTCTGTTCACCATCGTTATCTCCAAGAACTTTGAACACAGCAACACCGTCATTGAATTTCACCAGAATTTCATTCACCCATCACCAAAAGCTTGCTCCTTTCAAGCCTCCTAGTCTCGTTGTTGCATTCTCTGAAAAGGGTTTGAAGAGAGATGTCACCACAGCTGCTGCAGCGACGGAGGGAGATTACAGAAGGATAATGTTATCTGATGTGTTGGTGAAGAAGAAGGAAAAAGTAGTTTGGTGGGAGAGAGAATGGAAAGCTATGGACTTTGGAGCTGTTGCTGTCGTTTTGTCTATGCATTTGCTTAGTCTTTTGGCTCCGTTTCAATTCAATTGGAGAGCTGTTTCGGTTGCTTTTGGGCTTTATATCGTTACAGGTCTTCTGGGGATTACTCTGTCTTTCCATAGGAATCTTTCTCATAAAGCCTTCAAGCTACCTAAATGGCTTGAGTACTTGTTTGCTTATTGTGGAGCTCAAGCTCTTCAGGGAAACCCAATTGATTGGGTGAGTACACATAGGTACCATCATCAGTTTTGTGATTCAGACAGAGACCCTCATAGCCCACTTGATGGGTTTTGGTTCAGTCACATGAATTGGATGTTTGATACCAATACAATCACCCAAAGGTGTGGAGAGCCTAATAATGTTGGGGACTTGGAGAAGCAGCCATTCTATCGATTCCTTCGAACCACCTACATTTTGCATCCGCTGGCTCTAGCGGTTGCTTTATACGCAATGGGTGGCTTTCCATTCATCGTTTGGGGAATGGGTGTAAGAATAGTATGGGTATATCATATAACTTGGCTAGTGAACTCAGCTTGTCATGTATGGGGAAAACAAGCATGGAACACAGGCGATTTGTCTAAGAACAACTGGTGGGTAGCAGCTCTAGCATTCGGGGAAGGATGGCACAACAATCACCATGCTTTTGAGTTCTCAGCTCGACACGGCTTAGAATGGTGGCAACTTGATATGACTTGGTACGTCGTTAAGTTCCTTCAAGCCATCGGTTTAGCAACTGATGTCAAGCTCCCATCGGAAGCTCAGAAACAAAGAATGGCATTCACCAGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0012505 GO:0016020 GO:0016053 GO:0019222 GO:0019752 GO:0031323 GO:0031324 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:0098827 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 ko03320 ko04152 ko04212 map01040 map01212 map03320 map04152 map04212

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

371

Amino Acids

42.58

Weight (kDa)

9.27

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	131 - 343	2.8e-16	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15850
fragaria_vesca	FvH4_6g29730
malus_domestica	MD17G1212000.v1.1
prunus_persica	Prupe.3G087200_v2.0.a1 Prupe.3G087200_v2.0.a1
pyrus_communis	pycom17g21690
rosa_chinensis	RchiOBHm_Chr2g0135421
rosa_laevigata	RLG00000019462
rosa_multiflora	Rmu_ssc0000187.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109260
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370200 Rh2BG381900 Rh2CG360500 Rh2CG360600 Rh2DG398200
rosa_wichuraiana	Rw2G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	558
AccB7I	CCANNNNNTGG	1 cut(s)	608
AciI	CCGC	2 cut(s)	746, 758
AcsI	RAATTY	2 cut(s)	91, 102
AcuI	CTGAAG	1 cut(s)	506
AfaI	GTAC	4 cut(s)	491, 550, 560, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	608
AgsI	TTSAA	8 cut(s)	70, 91, 139, 181, 365, 370, 469, 1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	2 cut(s)	155, 582
AlwNI	CAGNNNCTG	2 cut(s)	203, 1113
ApeKI	GCWGC	5 cut(s)	200, 203, 206, 703, 923
ApoI	RAATTY	2 cut(s)	91, 102
Asp718I	GGTACC	1 cut(s)	558
AsuII	TTCGAA	1 cut(s)	724
BaeI	ACNNNNGTAYC	2 cut(s)	542, 575
BanI	GGYRCC	1 cut(s)	558
BanII	GRGCYC	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	5 cut(s)	187, 190, 218, 715, 935
BccI	CCATC	7 cut(s)	55, 123, 570, 602, 939, 1052, 1081
BceAI	ACGGC	1 cut(s)	1003
BcoDI	GTCTC	2 cut(s)	155, 582
BfaI	CTAG	4 cut(s)	147, 755, 845, 929
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	5 cut(s)	201, 204, 207, 704, 924
BlsI	GCNGC	5 cut(s)	202, 205, 208, 705, 925
BmcAI	AGTACT	1 cut(s)	491
BmiI	GGNNCC	2 cut(s)	357, 560
BmsI	GCATC	1 cut(s)	751
BpiI	GAAGAC	1 cut(s)	410
Bpu14I	TTCGAA	1 cut(s)	724
BpuEI	CTTGAG	2 cut(s)	498, 506
Bsa29I	ATCGAT	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse1I	ACTGG	1 cut(s)	917
Bse3DI	GCAATG	1 cut(s)	780
BseCI	ATCGAT	1 cut(s)	715
BseGI	GGATG	3 cut(s)	642, 742, 950
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	3 cut(s)	867, 990, 1097
BseNI	ACTGG	1 cut(s)	917
BseXI	GCAGC	5 cut(s)	187, 190, 218, 715, 935
BshNI	GGYRCC	1 cut(s)	558
BshVI	ATCGAT	1 cut(s)	715
BsiHKAI	GWGCWC	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmAI	GTCTC	2 cut(s)	155, 582
BsmFI	GGGAC	1 cut(s)	704
BsmI	GAATGC	3 cut(s)	161, 932, 1100
Bso31I	GGTCTC	1 cut(s)	582
Bsp119I	TTCGAA	1 cut(s)	724
Bsp1286I	GDGCHC	1 cut(s)	514
BspACI	CCGC	2 cut(s)	746, 758
BspCNI	CTCAG	3 cut(s)	866, 989, 1096
BspDI	ATCGAT	1 cut(s)	715
BspLI	GGNNCC	2 cut(s)	357, 560
BspMAI	CTGCAG	1 cut(s)	208
BspQI	GCTCTTC	1 cut(s)	525
BspT104I	TTCGAA	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	780
BsrI	ACTGG	1 cut(s)	917
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	3 cut(s)	15, 176, 525
BstBI	TTCGAA	1 cut(s)	724
BstC8I	GCNNGC	2 cut(s)	129, 750
BstDEI	CTNAG	6 cut(s)	344, 853, 903, 976, 991, 1083
BstF5I	GGATG	3 cut(s)	642, 742, 950
BstMAI	GTCTC	2 cut(s)	155, 582
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 770, 929
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	5 cut(s)	187, 190, 218, 715, 935
BstV2I	GAAGAC	1 cut(s)	410
BstXI	CCANNNNNNTGG	2 cut(s)	540, 668
Bsu15I	ATCGAT	1 cut(s)	715
BsuTUI	ATCGAT	1 cut(s)	715
BtsCI	GGATG	3 cut(s)	642, 742, 950
Cac8I	GCNNGC	2 cut(s)	129, 750
CaiI	CAGNNNCTG	2 cut(s)	203, 1113
ClaI	ATCGAT	1 cut(s)	715
Csp6I	GTAC	4 cut(s)	490, 549, 559, 1021
CviAII	CATG	4 cut(s)	628, 863, 882, 962
CviQI	GTAC	4 cut(s)	490, 549, 559, 1021
DdeI	CTNAG	6 cut(s)	344, 853, 903, 976, 991, 1083
Eam1104I	CTCTTC	3 cut(s)	15, 176, 525
EarI	CTCTTC	3 cut(s)	15, 176, 525
Ecl136II	GAGCTC	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	514
Eco31I	GGTCTC	1 cut(s)	582
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	514
FaeI	CATG	4 cut(s)	631, 866, 885, 965
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	4 cut(s)	627, 862, 881, 961
Fnu4HI	GCNGC	5 cut(s)	201, 204, 207, 704, 924
FokI	GGATG	3 cut(s)	649, 729, 957
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	5 cut(s)	201, 204, 207, 704, 924
FspBI	CTAG	4 cut(s)	147, 755, 845, 929
GluI	GCNGC	5 cut(s)	201, 204, 207, 704, 924
Hin1II	CATG	4 cut(s)	631, 866, 885, 965
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	3 cut(s)	448, 578, 717
Hpy166II	GTNNAC	3 cut(s)	44, 551, 850
Hpy188I	TCNGA	5 cut(s)	169, 244, 583, 1078, 1086
Hpy8I	GTNNAC	3 cut(s)	44, 551, 850
Hpy99I	CGWCG	2 cut(s)	214, 1028
HpyAV	CCTTC	6 cut(s)	222, 256, 475, 731, 935, 1046
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	1023
HpyCH4V	TGCA	4 cut(s)	161, 206, 337, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 770, 929
HpyF3I	CTNAG	6 cut(s)	344, 853, 903, 976, 991, 1083
HpySE526I	ACGT	1 cut(s)	1023
Hsp92II	CATG	4 cut(s)	631, 866, 885, 965
KpnI	GGTACC	1 cut(s)	562
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	5 cut(s)	136, 311, 361, 509, 1074
LpnPI	CCDG	7 cut(s)	112, 399, 407, 509, 734, 876, 898
Lsp1109I	GCAGC	5 cut(s)	187, 190, 218, 715, 935
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	4 cut(s)	147, 755, 845, 929
MaeII	ACGT	1 cut(s)	1023
MaeIII	GTNAC	3 cut(s)	190, 409, 623
MboII	GAAGA	5 cut(s)	193, 268, 271, 410, 512
MfeI	CAATTG	2 cut(s)	370, 534
MhlI	GDGCHC	1 cut(s)	514
MluCI	AATT	6 cut(s)	91, 102, 365, 370, 534, 631
MnlI	CCTC	4 cut(s)	47, 153, 208, 603
Mph1103I	ATGCAT	1 cut(s)	339
MseI	TTAA	1 cut(s)	1029
MspA1I	CMGCKG	2 cut(s)	200, 748
MunI	CAATTG	2 cut(s)	370, 534
Mva1269I	GAATGC	3 cut(s)	161, 932, 1100
MwoI	GCNNNNNNNGC	3 cut(s)	206, 770, 929
NlaIII	CATG	4 cut(s)	631, 866, 885, 965
NlaIV	GGNNCC	2 cut(s)	357, 560
NmuCI	GTSAC	2 cut(s)	190, 623
NsiI	ATGCAT	1 cut(s)	339
NspV	TTCGAA	1 cut(s)	724
PciSI	GCTCTTC	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	721
PctI	GAATGC	3 cut(s)	161, 932, 1100
PfeI	GAWTC	3 cut(s)	448, 578, 717
PflMI	CCANNNNNTGG	1 cut(s)	608
PkrI	GCNGC	5 cut(s)	202, 205, 208, 705, 925
Psp124BI	GAGCTC	1 cut(s)	514
PspN4I	GGNNCC	2 cut(s)	357, 560
PstI	CTGCAG	1 cut(s)	208
PstNI	CAGNNNCTG	2 cut(s)	203, 1113
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	4 cut(s)	491, 550, 560, 1022
RsaNI	GTAC	4 cut(s)	490, 549, 559, 1021
SacI	GAGCTC	1 cut(s)	514
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	1029
SatI	GCNGC	5 cut(s)	201, 204, 207, 704, 924
ScaI	AGTACT	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	514
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	1 cut(s)	204
SfuI	TTCGAA	1 cut(s)	724
SmlI	CTYRAG	2 cut(s)	485, 513
SmoI	CTYRAG	2 cut(s)	485, 513
Sse9I	AATT	6 cut(s)	91, 102, 365, 370, 534, 631
SsiI	CCGC	2 cut(s)	746, 758
SspMI	CTAG	4 cut(s)	147, 755, 845, 929
SstI	GAGCTC	1 cut(s)	514
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	1 cut(s)	1026
TaqI	TCGA	3 cut(s)	715, 724, 982
TasI	AATT	6 cut(s)	91, 102, 365, 370, 534, 631
TatI	WGTACW	2 cut(s)	489, 548
TfiI	GAWTC	3 cut(s)	448, 578, 717
Tru1I	TTAA	1 cut(s)	1029
Tru9I	TTAA	1 cut(s)	1029
TseFI	GTSAC	2 cut(s)	190, 623
TseI	GCWGC	5 cut(s)	200, 203, 206, 703, 923
Tsp45I	GTSAC	2 cut(s)	190, 623
TspDTI	ATGAA	3 cut(s)	96, 644, 781
TspGWI	ACGGA	2 cut(s)	227, 348
Van91I	CCANNNNNTGG	1 cut(s)	608
XapI	RAATTY	2 cut(s)	91, 102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	795
XspI	CTAG	4 cut(s)	147, 755, 845, 929
ZrmI	AGTACT	1 cut(s)	491
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.