Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014585

Physical Location & Seq

Genomic Coordinates Reverse (-)

6467640 .. 6470062

Gene Structure 2423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G087200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGATTTGATCACATCACCACCGTCCAATCCCAAAACCCACCATTGTTTCCCTCTTCACCGCACGTTTAACCGGCCAGGAAGACCCGTTTTAGGGTTCAGGCCATTGCCTCAGAGTTCCAAGGTCCTAAATTTTGTTCATTATGATTCAAAACAATCACAACCCAATAAGTTTTTAACAAGCACAAAGCTTTTCAGCCATTTGCTTACCAATTCCAATAGAACAGTACCAACAATAAGTACCAATGCAGCTTTGTCCGAAGCCACAGAACCAGAGGCAGAGACAGAGCCAGGGAAGTATAGGAGAATTCTATTGTCTGATGTGATTGTGAAGAGGCCTAGGAATGTGTTTATGGGGAGAGAATGGAACTTAAGGGATATGGCCACAGCTGGTGTTGTTTTGGCAATGCATTTGCTCAGTCTTTTTGCACCTTTTCAATTCAATTGGGGAGCTTTTTGGGTGGCAGTGGCACTTTATGTTGTGACTGGTCTATTTGGCATCACTCTTTCTTATCATAGGAATCTTTCACACAAGAGTTTCAAGCTCCCCAAGTGGCTTGAATACTTGTTTGCTTATTGTGCAGTTCAAGCACTTCAGGGGAGCCCAATTGATTGGGTGAGCACACATAGGTACCACCACCAGTTTTGTGATTCAGAGAGAGACCCACATAGCCCAATTGAAGGTTTCTGGTGTAGTCACATTAGTTGGCTCTTTGATACCAATTCTGTGGCTGAAAGGTGTGGGGGATCAAATAATGCTGGGGATTTAGAGAAGCAGCCCTTCTATCAGCTCATTCAGAAAACTTACATTGCTCACCCCATTGCTCTTGGAGTTCTACTGTATGCAATGGGAGGATTCCCATTCCTTGTGTGGGGAATGGGTGTGAGAATTATATGGGTATACCACATTACATGGCTGGTTAACTCGGCTTGCCACGTGTGGGGAAAGCAAGCATGGAATACTTGTGACTTGTCCAGGAACAATTGGTGGGTGGCATTATTAGCATTTGGAGAGGGTTGGCACAATAATCACCACGCTTTTGAGTACTCAGCTAGACATGGCCTCAATTGGTGGCAACTTGACATGACTTGGTATGTTGTGAAATTTCTCCAAGCTATTGGATTGGCAACTGACGTGAAGTTACCCACAGAGGCCCACAAACAAAGAATGGCTTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0012505 GO:0016020 GO:0016053 GO:0019222 GO:0019752 GO:0031323 GO:0031324 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:0098827 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 ko03320 ko04152 ko04212 map01040 map01212 map03320 map04152 map04212

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

394

Amino Acids

45.15

Weight (kDa)

9.18

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15850
fragaria_vesca	FvH4_6g29730
malus_domestica	MD17G1212000.v1.1
prunus_persica	Prupe.3G087200_v2.0.a1 Prupe.3G087200_v2.0.a1
pyrus_communis	pycom17g21690
rosa_chinensis	RchiOBHm_Chr2g0135421
rosa_laevigata	RLG00000019462
rosa_multiflora	Rmu_ssc0000187.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109260
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370200 Rh2BG381900 Rh2CG360500 Rh2CG360600 Rh2DG398200
rosa_wichuraiana	Rw2G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	630
AccB1I	GGYRCC	1 cut(s)	630
AccI	GTMKAC	1 cut(s)	900
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	754
AcoI	YGGCCR	2 cut(s)	74, 381
AcsI	RAATTY	3 cut(s)	130, 306, 1103
AcuI	CTGAAG	1 cut(s)	578
AcvI	CACGTG	1 cut(s)	937
AfaI	GTAC	4 cut(s)	228, 241, 632, 1046
AfiI	CCNNNNNNNGG	5 cut(s)	92, 93, 680, 871, 940
AflII	CTTAAG	1 cut(s)	370
AflIII	ACRYGT	1 cut(s)	936
AgsI	TTSAA	8 cut(s)	150, 437, 442, 541, 560, 587, 680, 1177
AjiI	CACGTC	1 cut(s)	1135
AjnI	CCWGG	3 cut(s)	76, 289, 974
AluBI	AGCT	8 cut(s)	190, 251, 389, 452, 544, 790, 1052, 1115
AluI	AGCT	8 cut(s)	190, 251, 389, 452, 544, 790, 1052, 1115
Alw21I	GWGCWC	1 cut(s)	623
Alw26I	GTCTC	2 cut(s)	275, 654
AlwI	GGATC	1 cut(s)	754
AoxI	GGCC	6 cut(s)	74, 101, 335, 381, 1060, 1152
ApeKI	GCWGC	2 cut(s)	248, 775
ApoI	RAATTY	3 cut(s)	130, 306, 1103
Asp718I	GGTACC	1 cut(s)	630
AspA2I	CCTAGG	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	124, 1153
AsuHPI	GGTGA	5 cut(s)	9, 50, 628, 806, 1022
AvaII	GGWCC	1 cut(s)	124
AvrII	CCTAGG	1 cut(s)	338
BaeI	ACNNNNGTAYC	2 cut(s)	614, 647
BalI	TGGCCA	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	630
BanII	GRGCYC	1 cut(s)	605
BbrPI	CACGTG	1 cut(s)	937
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	623
BbvI	GCAGC	2 cut(s)	260, 787
BciT130I	CCWGG	3 cut(s)	78, 291, 976
BclI	TGATCA	1 cut(s)	9
BcoDI	GTCTC	2 cut(s)	275, 654
BfaI	CTAG	2 cut(s)	339, 1053
BfrI	CTTAAG	1 cut(s)	370
BisI	GCNGC	2 cut(s)	249, 776
BlnI	CCTAGG	1 cut(s)	338
BlsI	GCNGC	2 cut(s)	250, 777
BmcAI	AGTACT	1 cut(s)	1046
Bme1390I	CCNGG	3 cut(s)	78, 291, 976
Bme18I	GGWCC	1 cut(s)	124
BmgBI	CACGTC	1 cut(s)	1135
BmgT120I	GGNCC	2 cut(s)	124, 1153
BmiI	GGNNCC	2 cut(s)	602, 632
BmrFI	CCNGG	3 cut(s)	78, 291, 976
BmsI	GCATC	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	937
BsaI	GGTCTC	1 cut(s)	654
BsaJI	CCNNGG	3 cut(s)	120, 290, 338
Bsc4I	CCNNNNNNNGG	5 cut(s)	92, 93, 680, 871, 940
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	490, 640
Bse3DI	GCAATG	5 cut(s)	104, 411, 807, 819, 852
BseBI	CCWGG	3 cut(s)	78, 291, 976
BseDI	CCNNGG	3 cut(s)	120, 290, 338
BseLI	CCNNNNNNNGG	5 cut(s)	92, 93, 680, 871, 940
BseMI	GCAATG	5 cut(s)	104, 411, 807, 819, 852
BseMII	CTCAG	3 cut(s)	125, 430, 1062
BseNI	ACTGG	2 cut(s)	490, 640
BseXI	GCAGC	2 cut(s)	260, 787
BseYI	CCCAGC	1 cut(s)	758
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	6 cut(s)	76, 103, 337, 383, 1062, 1154
BshNI	GGYRCC	1 cut(s)	630
BsiHKAI	GWGCWC	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	5 cut(s)	92, 93, 680, 871, 940
BsmAI	GTCTC	2 cut(s)	275, 654
BsnI	GGCC	6 cut(s)	76, 103, 337, 383, 1062, 1154
Bso31I	GGTCTC	1 cut(s)	654
Bsp1286I	GDGCHC	2 cut(s)	605, 623
Bsp143I	GATC	2 cut(s)	9, 746
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	6 cut(s)	76, 103, 337, 383, 1062, 1154
BspCNI	CTCAG	3 cut(s)	124, 429, 1061
BspLI	GGNNCC	2 cut(s)	602, 632
BspPI	GGATC	1 cut(s)	754
BspT107I	GGYRCC	1 cut(s)	630
BspTI	CTTAAG	1 cut(s)	370
BspTNI	GGTCTC	1 cut(s)	654
BsrDI	GCAATG	5 cut(s)	104, 411, 807, 819, 852
BsrFI	RCCGGY	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	490, 640
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	3 cut(s)	120, 290, 338
BssMI	GATC	2 cut(s)	9, 746
BssNAI	GTATAC	1 cut(s)	901
BssT1I	CCWWGG	2 cut(s)	120, 338
Bst1107I	GTATAC	1 cut(s)	901
Bst2UI	CCWGG	3 cut(s)	78, 291, 976
Bst4CI	ACNGT	3 cut(s)	24, 226, 840
Bst6I	CTCTTC	2 cut(s)	60, 326
BstAFI	CTTAAG	1 cut(s)	370
BstBAI	YACGTR	1 cut(s)	937
BstC8I	GCNNGC	2 cut(s)	931, 951
BstDEI	CTNAG	3 cut(s)	111, 416, 1048
BstKTI	GATC	2 cut(s)	12, 749
BstMAI	GTCTC	2 cut(s)	275, 654
BstMBI	GATC	2 cut(s)	9, 746
BstMWI	GCNNNNNNNGC	3 cut(s)	578, 587, 1001
BstNI	CCWGG	3 cut(s)	78, 291, 976
BstSCI	CCNGG	3 cut(s)	76, 289, 974
BstV1I	GCAGC	2 cut(s)	260, 787
BstV2I	GAAGAC	1 cut(s)	88
BstXI	CCANNNNNNTGG	3 cut(s)	612, 727, 1118
BstZ17I	GTATAC	1 cut(s)	901
BsuRI	GGCC	6 cut(s)	76, 103, 337, 383, 1062, 1154
BtrI	CACGTC	1 cut(s)	1135
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	931, 951
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	124, 1153
Csp6I	GTAC	4 cut(s)	227, 240, 631, 1045
CspCI	CAANNNNNGTGG	2 cut(s)	626, 661
CviAII	CATG	4 cut(s)	912, 954, 1058, 1084
CviQI	GTAC	4 cut(s)	227, 240, 631, 1045
DdeI	CTNAG	3 cut(s)	111, 416, 1048
DpnI	GATC	2 cut(s)	11, 748
DpnII	GATC	2 cut(s)	9, 746
EaeI	YGGCCR	2 cut(s)	74, 381
Eam1104I	CTCTTC	2 cut(s)	60, 326
EarI	CTCTTC	2 cut(s)	60, 326
Eco130I	CCWWGG	2 cut(s)	120, 338
Eco147I	AGGCCT	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	605
Eco31I	GGTCTC	1 cut(s)	654
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	578
Eco72I	CACGTG	1 cut(s)	937
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	306
EcoRII	CCWGG	3 cut(s)	76, 289, 974
EcoT14I	CCWWGG	2 cut(s)	120, 338
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	605
ErhI	CCWWGG	2 cut(s)	120, 338
FaeI	CATG	4 cut(s)	915, 957, 1061, 1087
FalI	AAGNNNNNCTT	3 cut(s)	764, 796, 1156
FatI	CATG	4 cut(s)	911, 953, 1057, 1083
FbaI	TGATCA	1 cut(s)	9
FblI	GTMKAC	1 cut(s)	900
Fnu4HI	GCNGC	2 cut(s)	249, 776
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	2 cut(s)	249, 776
FspBI	CTAG	2 cut(s)	339, 1053
GluI	GCNGC	2 cut(s)	249, 776
GsaI	CCCAGC	1 cut(s)	762
HaeIII	GGCC	6 cut(s)	76, 103, 337, 383, 1062, 1154
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	4 cut(s)	915, 957, 1061, 1087
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	4 cut(s)	146, 520, 650, 855
HpaI	GTTAAC	1 cut(s)	922
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	5 cut(s)	9, 50, 628, 806, 1022
Hpy166II	GTNNAC	2 cut(s)	901, 922
Hpy188I	TCNGA	5 cut(s)	114, 259, 319, 655, 798
Hpy8I	GTNNAC	2 cut(s)	901, 922
HpyAV	CCTTC	2 cut(s)	674, 790
HpyCH4III	ACNGT	3 cut(s)	24, 226, 840
HpyCH4IV	ACGT	3 cut(s)	65, 936, 1134
HpyCH4V	TGCA	5 cut(s)	248, 409, 428, 581, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	578, 587, 1001
HpyF3I	CTNAG	3 cut(s)	111, 416, 1048
HpySE526I	ACGT	3 cut(s)	65, 936, 1134
Hsp92II	CATG	4 cut(s)	915, 957, 1061, 1087
KpnI	GGTACC	1 cut(s)	634
Ksp22I	TGATCA	1 cut(s)	9
KspAI	GTTAAC	1 cut(s)	922
Kzo9I	GATC	2 cut(s)	9, 746
LmnI	GCTCC	3 cut(s)	449, 549, 600
Lsp1109I	GCAGC	2 cut(s)	260, 787
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	2 cut(s)	339, 1053
MaeII	ACGT	3 cut(s)	65, 936, 1134
MaeIII	GTNAC	4 cut(s)	481, 695, 965, 1140
MalI	GATC	2 cut(s)	11, 748
MboI	GATC	2 cut(s)	9, 746
MboII	GAAGA	3 cut(s)	47, 93, 343
MfeI	CAATTG	5 cut(s)	442, 606, 675, 982, 1066
MhlI	GDGCHC	2 cut(s)	605, 623
MlsI	TGGCCA	1 cut(s)	383
MluNI	TGGCCA	1 cut(s)	383
MnlI	CCTC	8 cut(s)	63, 120, 268, 327, 845, 1006, 1073, 1144
Mox20I	TGGCCA	1 cut(s)	383
Mph1103I	ATGCAT	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	4 cut(s)	69, 176, 371, 921
Msp20I	TGGCCA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	389
MspCI	CTTAAG	1 cut(s)	370
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	3 cut(s)	78, 291, 976
MunI	CAATTG	5 cut(s)	442, 606, 675, 982, 1066
MvaI	CCWGG	3 cut(s)	78, 291, 976
MwoI	GCNNNNNNNGC	3 cut(s)	578, 587, 1001
NdeII	GATC	2 cut(s)	9, 746
NlaIII	CATG	4 cut(s)	915, 957, 1061, 1087
NlaIV	GGNNCC	2 cut(s)	602, 632
NmeAIII	GCCGAG	1 cut(s)	905
NmuCI	GTSAC	3 cut(s)	481, 695, 965
NsiI	ATGCAT	1 cut(s)	411
PceI	AGGCCT	1 cut(s)	337
PfeI	GAWTC	4 cut(s)	146, 520, 650, 855
PfoI	TCCNGGA	1 cut(s)	974
PkrI	GCNGC	2 cut(s)	250, 777
PmaCI	CACGTG	1 cut(s)	937
PmlI	CACGTG	1 cut(s)	937
Ppu21I	YACGTR	1 cut(s)	937
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	3 cut(s)	76, 289, 974
PspCI	CACGTG	1 cut(s)	937
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	3 cut(s)	76, 289, 974
PspN4I	GGNNCC	2 cut(s)	602, 632
PspPI	GGNCC	2 cut(s)	124, 1153
PspPPI	RGGWCCY	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	4 cut(s)	228, 241, 632, 1046
RsaNI	GTAC	4 cut(s)	227, 240, 631, 1045
SaqAI	TTAA	4 cut(s)	69, 176, 371, 921
SatI	GCNGC	2 cut(s)	249, 776
Sau3AI	GATC	2 cut(s)	9, 746
Sau96I	GGNCC	2 cut(s)	124, 1153
ScaI	AGTACT	1 cut(s)	1046
ScrFI	CCNGG	3 cut(s)	78, 291, 976
SduI	GDGCHC	2 cut(s)	605, 623
SfaNI	GCATC	1 cut(s)	507
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	2 cut(s)	339, 1053
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	3 cut(s)	76, 289, 974
StyI	CCWWGG	2 cut(s)	120, 338
TaaI	ACNGT	3 cut(s)	24, 226, 840
TaiI	ACGT	3 cut(s)	68, 939, 1137
TatI	WGTACW	1 cut(s)	1044
TfiI	GAWTC	4 cut(s)	146, 520, 650, 855
Tru1I	TTAA	4 cut(s)	69, 176, 371, 921
Tru9I	TTAA	4 cut(s)	69, 176, 371, 921
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	3 cut(s)	481, 695, 965
TseI	GCWGC	2 cut(s)	248, 775
Tsp45I	GTSAC	3 cut(s)	481, 695, 965
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	471
Vha464I	CTTAAG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	3 cut(s)	130, 306, 1103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	867
XmaJI	CCTAGG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	900
XspI	CTAG	2 cut(s)	339, 1053
ZrmI	AGTACT	1 cut(s)	1046
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.