Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014585

Physical Location & Seq

Genomic Coordinates Forward (+)

57908261 .. 57910503

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG398200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGGGTTGATCACATCACCACCATCCAATCCCAAAACCCACCATTATTTCAATCTCCACCGCTCATTTCGCCGGCCAGGGAGCCCAGTATTTGGTCTCCGGCCACTTCCTCGGAGCTCCAAGGTCCTCAACTTTGTTCATTGCAGTTCAAAACAATCAGAACCCAATAAATGCTTATCAAGCACCAAGCTTTTCACCCATTTTCTCACCAACTCTAATAGAACACTACCTTCCATAATCACCAATGCAGCTGTGGCAGAATCCACAGAACCAGAGCCAGAAACAGAGCCAGAGAAATATAAGAGAATCATATTATCTGATGTGATTGTGCAGAGGCCTAGATTTTTGTTTAAGGGGAGAAAATGGAACTCAAAGGATCTGGCCACAGCTGGTGTTGTGGTGGGAATGCATGTTCTGAGTCTTTTTGCGCCTTTTCAATTCAATTGGGGAGCTTTTTGGGTGGCAGTGTCACTTTATGTTGTGACTGGTCTATTTGGTATCACTCTTTCTTTTCATAGGAATCTTTCACATCGGAGTTTCAAGCTTCCCAAATGGCTTGAGTACTTGTTTGCTTATTTTGGAGCTCAAGCACTTCAGGGGAGCCCAATTGATTGGGTCTGTACACATAGGTACCACCACCAGTTTTGTGATTCTGAGAAAGACCCACATAGCCCAGTTGAAGGATTCTGGTACAGTCACATGAGTTGGCTCTTTGATACTAATTCTGTGGCTGAAAGGTGTGGGGGCCTAGATAATGTTGGGGATTTACAGAAGCAGCCCTTCTATCAGTTCCTAAAGGCAACTTACATTGCTCACCCAATTGCTCTTGGTGTTCTACTATATGCGATGGGAGGGTTCCCTTTCATTGTCTGGGGAATGGGTGTGAGGATTATTTGGGTGTACCACATTACTTGGCTGGTAAATTCAGCTTGCCATGTTTGGGGAGAGAAAGCATGGAAAACTGGTGATTTGTCTAGGAACAATTGGTGGGTGGCATTACTAGCATTTGGAGAGGGATGGCATAATAATCACCACGCTTTTGAGTACTCAGCTAGACATGGTCTGGATTGGTGGCAGCTTGACATGACTTGGTATGTTGTGAGATTGCTCCAAGCTATTGGATTGGCCACCGATGTGAAGGTACCAACAGAGGTACAGAAACAAAGAATGGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0012505 GO:0016020 GO:0016053 GO:0019222 GO:0019752 GO:0031323 GO:0031324 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:0098827 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 ko03320 ko04152 ko04212 map01040 map01212 map03320 map04152 map04212

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

392

Amino Acids

45.04

Weight (kDa)

9.35

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	149 - 368	7.1e-19	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15850
fragaria_vesca	FvH4_6g29730
malus_domestica	MD17G1212000.v1.1
prunus_persica	Prupe.3G087200_v2.0.a1 Prupe.3G087200_v2.0.a1
pyrus_communis	pycom17g21690
rosa_chinensis	RchiOBHm_Chr2g0135421
rosa_laevigata	RLG00000019462
rosa_multiflora	Rmu_ssc0000187.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109260
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370200 Rh2BG381900 Rh2CG360500 Rh2CG360600 Rh2DG398200
rosa_wichuraiana	Rw2G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	630, 1141
AccB1I	GGYRCC	2 cut(s)	630, 1141
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	63
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	4 cut(s)	74, 101, 381, 1125
AcsI	RAATTY	1 cut(s)	922
AcuI	CTGAAG	1 cut(s)	578
AfaI	GTAC	8 cut(s)	563, 622, 632, 692, 902, 1046, 1143, 1155
AfiI	CCNNNNNNNGG	3 cut(s)	92, 680, 940
AgsI	TTSAA	6 cut(s)	52, 150, 437, 442, 541, 680
AjnI	CCWGG	1 cut(s)	76
AleI	CACNNNNGTG	1 cut(s)	1133
AloI	GAACNNNNNNTCC	2 cut(s)	396, 428
Alw21I	GWGCWC	2 cut(s)	119, 586
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	384
AoxI	GGCC	6 cut(s)	74, 101, 335, 381, 745, 1125
ApeKI	GCWGC	3 cut(s)	248, 775, 1075
ApoI	RAATTY	1 cut(s)	922
Asp718I	GGTACC	2 cut(s)	630, 1141
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	2 cut(s)	124, 745
AsuHPI	GGTGA	7 cut(s)	9, 187, 199, 232, 806, 977, 1022
AvaII	GGWCC	1 cut(s)	124
BaeI	ACNNNNGTAYC	2 cut(s)	614, 647
BalI	TGGCCA	2 cut(s)	383, 1127
BanI	GGYRCC	2 cut(s)	630, 1141
BanII	GRGCYC	4 cut(s)	86, 119, 586, 605
Bbv12I	GWGCWC	2 cut(s)	119, 586
BbvI	GCAGC	3 cut(s)	260, 787, 1087
BccI	CCATC	3 cut(s)	31, 841, 1011
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	5 cut(s)	339, 749, 975, 1001, 1053
BisI	GCNGC	3 cut(s)	249, 776, 1076
BlsI	GCNGC	3 cut(s)	250, 777, 1077
BmcAI	AGTACT	2 cut(s)	563, 1046
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	124, 745
BmiI	GGNNCC	6 cut(s)	83, 602, 632, 746, 857, 1143
BmrFI	CCNGG	1 cut(s)	78
BmrI	ACTGGG	2 cut(s)	80, 668
BmuI	ACTGGG	2 cut(s)	80, 668
BpuEI	CTTGAG	2 cut(s)	570, 578
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	77, 110, 120
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 680, 940
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	5 cut(s)	86, 490, 640, 674, 967
Bse3DI	GCAATG	2 cut(s)	139, 807
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	3 cut(s)	77, 110, 120
BseGI	GGATG	2 cut(s)	23, 1022
BseLI	CCNNNNNNNGG	3 cut(s)	92, 680, 940
BseMI	GCAATG	2 cut(s)	139, 807
BseMII	CTCAG	3 cut(s)	407, 645, 1062
BseNI	ACTGG	5 cut(s)	86, 490, 640, 674, 967
BseXI	GCAGC	3 cut(s)	260, 787, 1087
BsgI	GTGCAG	1 cut(s)	350
BshFI	GGCC	6 cut(s)	76, 103, 337, 383, 747, 1127
BshNI	GGYRCC	2 cut(s)	630, 1141
BsiHKAI	GWGCWC	2 cut(s)	119, 586
BsiSI	CCGG	2 cut(s)	73, 100
BslI	CCNNNNNNNGG	3 cut(s)	92, 680, 940
BsmAI	GTCTC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	6 cut(s)	76, 103, 337, 383, 747, 1127
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	4 cut(s)	86, 119, 586, 605
Bsp1407I	TGTACA	1 cut(s)	620
Bsp143I	GATC	2 cut(s)	9, 376
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	6 cut(s)	76, 103, 337, 383, 747, 1127
BspCNI	CTCAG	3 cut(s)	408, 646, 1061
BspLI	GGNNCC	6 cut(s)	83, 602, 632, 746, 857, 1143
BspPI	GGATC	1 cut(s)	384
BspT107I	GGYRCC	2 cut(s)	630, 1141
BspTNI	GGTCTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	63
BsrDI	GCAATG	2 cut(s)	139, 807
BsrFI	RCCGGY	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	620
BsrI	ACTGG	5 cut(s)	86, 490, 640, 674, 967
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	3 cut(s)	77, 110, 120
BssMI	GATC	2 cut(s)	9, 376
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	695
BstAUI	TGTACA	1 cut(s)	620
BstC8I	GCNNGC	2 cut(s)	74, 931
BstDEI	CTNAG	3 cut(s)	416, 654, 1048
BstF5I	GGATG	2 cut(s)	23, 1022
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	2 cut(s)	12, 379
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	2 cut(s)	9, 376
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 180, 254, 1001
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	3 cut(s)	260, 787, 1087
BstX2I	RGATCY	1 cut(s)	376
BstXI	CCANNNNNNTGG	2 cut(s)	612, 1118
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	6 cut(s)	76, 103, 337, 383, 747, 1127
BtgZI	GCGATG	1 cut(s)	860
BtsCI	GGATG	2 cut(s)	23, 1022
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	74, 931
CfoI	GCGC	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	124, 745
Csp6I	GTAC	8 cut(s)	562, 621, 631, 691, 901, 1045, 1142, 1154
CspCI	CAANNNNNGTGG	4 cut(s)	626, 661, 893, 928
CviAII	CATG	6 cut(s)	410, 700, 935, 954, 1058, 1084
CviQI	GTAC	8 cut(s)	562, 621, 631, 691, 901, 1045, 1142, 1154
DdeI	CTNAG	3 cut(s)	416, 654, 1048
DpnI	GATC	2 cut(s)	11, 378
DpnII	GATC	2 cut(s)	9, 376
EaeI	YGGCCR	4 cut(s)	74, 101, 381, 1125
Ecl136II	GAGCTC	2 cut(s)	117, 584
Eco130I	CCWWGG	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	337
Eco24I	GRGCYC	4 cut(s)	86, 119, 586, 605
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	2 cut(s)	117, 584
Eco57I	CTGAAG	1 cut(s)	578
EcoICRI	GAGCTC	2 cut(s)	117, 584
EcoO109I	RGGNCCY	2 cut(s)	124, 745
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	4 cut(s)	86, 119, 586, 605
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	6 cut(s)	413, 703, 938, 957, 1061, 1087
FalI	AAGNNNNNCTT	3 cut(s)	764, 796, 1156
FatI	CATG	6 cut(s)	409, 699, 934, 953, 1057, 1083
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	249, 776, 1076
FokI	GGATG	2 cut(s)	10, 1029
FriOI	GRGCYC	4 cut(s)	86, 119, 586, 605
Fsp4HI	GCNGC	3 cut(s)	249, 776, 1076
FspBI	CTAG	5 cut(s)	339, 749, 975, 1001, 1053
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	3 cut(s)	249, 776, 1076
HaeIII	GGCC	6 cut(s)	76, 103, 337, 383, 747, 1127
HapII	CCGG	2 cut(s)	73, 100
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	6 cut(s)	413, 703, 938, 957, 1061, 1087
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HindIII	AAGCTT	2 cut(s)	188, 542
HinfI	GANTC	6 cut(s)	260, 306, 418, 520, 650, 684
HpaII	CCGG	2 cut(s)	73, 100
HphI	GGTGA	7 cut(s)	9, 187, 199, 232, 806, 977, 1022
Hpy166II	GTNNAC	2 cut(s)	623, 901
Hpy188I	TCNGA	6 cut(s)	114, 160, 319, 417, 534, 655
Hpy188III	TCNNGA	1 cut(s)	1064
Hpy8I	GTNNAC	2 cut(s)	623, 901
HpyAV	CCTTC	4 cut(s)	240, 674, 790, 1132
HpyCH4III	ACNGT	1 cut(s)	695
HpyCH4V	TGCA	4 cut(s)	144, 248, 331, 409
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 180, 254, 1001
HpyF3I	CTNAG	3 cut(s)	416, 654, 1048
Hsp92II	CATG	6 cut(s)	413, 703, 938, 957, 1061, 1087
HspAI	GCGC	1 cut(s)	428
KpnI	GGTACC	2 cut(s)	634, 1145
KroI	GCCGGC	1 cut(s)	72
KroNI	GCCGGC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	9, 376
LmnI	GCTCC	7 cut(s)	81, 114, 122, 449, 581, 600, 1113
Lsp1109I	GCAGC	3 cut(s)	260, 787, 1087
MaeI	CTAG	5 cut(s)	339, 749, 975, 1001, 1053
MaeIII	GTNAC	3 cut(s)	468, 481, 695
MalI	GATC	2 cut(s)	11, 378
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	2 cut(s)	9, 376
MfeI	CAATTG	4 cut(s)	442, 606, 819, 982
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	4 cut(s)	86, 119, 586, 605
MlsI	TGGCCA	2 cut(s)	383, 1127
MluCI	AATT	7 cut(s)	437, 442, 606, 721, 819, 922, 982
MluNI	TGGCCA	2 cut(s)	383, 1127
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	7 cut(s)	120, 137, 327, 845, 879, 1006, 1144
Mox20I	TGGCCA	2 cut(s)	383, 1127
Mph1103I	ATGCAT	1 cut(s)	411
MroNI	GCCGGC	1 cut(s)	72
MscI	TGGCCA	2 cut(s)	383, 1127
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	1133
Msp20I	TGGCCA	2 cut(s)	383, 1127
MspA1I	CMGCKG	2 cut(s)	251, 389
MspI	CCGG	2 cut(s)	73, 100
MspR9I	CCNGG	1 cut(s)	78
MunI	CAATTG	4 cut(s)	442, 606, 819, 982
Mva1269I	GAATGC	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	69, 180, 254, 1001
NaeI	GCCGGC	1 cut(s)	74
NdeII	GATC	2 cut(s)	9, 376
NgoMIV	GCCGGC	1 cut(s)	72
NlaIII	CATG	6 cut(s)	413, 703, 938, 957, 1061, 1087
NlaIV	GGNNCC	6 cut(s)	83, 602, 632, 746, 857, 1143
NmuCI	GTSAC	3 cut(s)	468, 481, 695
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	1 cut(s)	413
OliI	CACNNNNGTG	1 cut(s)	1133
PceI	AGGCCT	1 cut(s)	337
PctI	GAATGC	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	74
PfeI	GAWTC	5 cut(s)	260, 306, 520, 650, 684
PflFI	GACNNNGTC	1 cut(s)	1059
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	250, 777, 1077
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
PpuMI	RGGWCCY	1 cut(s)	124
Psp124BI	GAGCTC	2 cut(s)	119, 586
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	6 cut(s)	83, 602, 632, 746, 857, 1143
PspPI	GGNCC	2 cut(s)	124, 745
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	376
PsyI	GACNNNGTC	1 cut(s)	1059
PvuII	CAGCTG	2 cut(s)	251, 389
RsaI	GTAC	8 cut(s)	563, 622, 632, 692, 902, 1046, 1143, 1155
RsaNI	GTAC	8 cut(s)	562, 621, 631, 691, 901, 1045, 1142, 1154
RseI	CAYNNNNRTG	1 cut(s)	1133
SacI	GAGCTC	2 cut(s)	119, 586
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	249, 776, 1076
Sau3AI	GATC	2 cut(s)	9, 376
Sau96I	GGNCC	2 cut(s)	124, 745
ScaI	AGTACT	2 cut(s)	563, 1046
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	4 cut(s)	86, 119, 586, 605
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	1133
SmlI	CTYRAG	2 cut(s)	557, 585
SmoI	CTYRAG	2 cut(s)	557, 585
Sse9I	AATT	7 cut(s)	437, 442, 606, 721, 819, 922, 982
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	5 cut(s)	339, 749, 975, 1001, 1053
SstI	GAGCTC	2 cut(s)	119, 586
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	695
TasI	AATT	7 cut(s)	437, 442, 606, 721, 819, 922, 982
TatI	WGTACW	3 cut(s)	561, 620, 1044
TfiI	GAWTC	5 cut(s)	260, 306, 520, 650, 684
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	3 cut(s)	468, 481, 695
TseI	GCWGC	3 cut(s)	248, 775, 1075
Tsp45I	GTSAC	3 cut(s)	468, 481, 695
TspDTI	ATGAA	3 cut(s)	128, 503, 853
TspRI	CASTG	1 cut(s)	471
Tth111I	GACNNNGTC	1 cut(s)	1059
Van91I	CCANNNNNTGG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	922
XceI	RCATGY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XspI	CTAG	5 cut(s)	339, 749, 975, 1001, 1053
ZrmI	AGTACT	2 cut(s)	563, 1046
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.