Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014585

Physical Location & Seq

Genomic Coordinates Forward (+)

22953562 .. 22955772

Gene Structure 2211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGATTTGATCACATCACCAACCTCCAATCCCAAAACCCACCATTATTTCAAACTCCACCGCTCATTTCTCCGGCCAGGGAGCCTAGTTCTTGGTCTCCGGCCACTTCCTCAGAGCTCCAAAGTCCTCAACTTTGCTCACTGCAGTTCAAAACAATCAGAACCCAATAAATGCTTATCAAGCACAAAGCTTTTCACCCATTTTCTCTCCAATTCTAGTAGAACAGTACCTTCAATAACCACCAATGCAGCTTTGGCAGAATCTACAGAACCAGAGCCAGAAACAGAGCAAGGAAAGTACAACAGGATTTTACTATCTGATGTGATTGTGAAGAGGCCTAGACATGTGTTTAAGGGGAGAAAATGGAGCACAATGGACTTGGCCACAGCTGGTGTTGTGGTGGGGATGCATGTTCTGAGTCTTTTGGCTCCTTTTCAATTCAATTGGGGAGCTTTATGGGTGGCAGTCTCACTTTATGTTGTGACTGGCCTATTTGGTATCACTCTTTCTTATCATAGGAACCTTTCACATAGAAGTTTCAAGCTTCCCAAGTGGCTTGAGTACTTGTTTGCTTACTGTGGAGCTCAAGCACTTCAGGGGAGCCCAATTGATTGGGTGTGTACACATAGATACCACCACCAGTTTTGTGATTCTGAGAAAGACCCACATAGCCCAATTGAAGGATTCTGGTTTAGTCACATGAGTTGGCTCTTTGATACCAATTCTGTGACTGAAAGGTGTGGGGGCCTAGATAATGTTGGGGATTTACAGAAGCAGCCCTTCTATCAGTTCCTAAAGGCAACTTACATCGCTCACCCAGTCGCTCTTGGTGCTCTACTGTATGCAATGGGAGGGTTCCCTTTCATTGTTTGGGGAATGGGTGTGAGGATCATTTGGGTGTATCACATTACTTGGCTGGTAAACTCAGCTTGCCATGTTTGGGGAGAGCAAGCATGGAATACTGGTGACTTGTCCAGGAACAATTGGTGGGTGGCATTACTAGCATTTGGAGAGGGATGGCATAATAATCACCATGCTTTTGAGTACTCAGCTAGACATGGTCTGGATTGGTGGCAGCTTGATATGACTTGGTATGTTGTAAGATTGCTCCAAGCTATTGGATTGGCAACTGACGTGAAGGTACCATCAGAGGTACAGAAACAAAGGATGGCTTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0012505 GO:0016020 GO:0016053 GO:0019222 GO:0019752 GO:0031323 GO:0031324 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:0098827 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 ko03320 ko04152 ko04212 map01040 map01212 map03320 map04152 map04212

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

394

Amino Acids

44.83

Weight (kDa)

8.98

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	149 - 368	7.9e-18	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15850
fragaria_vesca	FvH4_6g29730
malus_domestica	MD17G1212000.v1.1
prunus_persica	Prupe.3G087200_v2.0.a1 Prupe.3G087200_v2.0.a1
pyrus_communis	pycom17g21690
rosa_chinensis	RchiOBHm_Chr2g0135421
rosa_laevigata	RLG00000019462
rosa_multiflora	Rmu_ssc0000187.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109260
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370200 Rh2BG381900 Rh2CG360500 Rh2CG360600 Rh2DG398200
rosa_wichuraiana	Rw2G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1141
AccB1I	GGYRCC	1 cut(s)	1141
AccBSI	CCGCTC	1 cut(s)	63
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	896
AcoI	YGGCCR	3 cut(s)	74, 101, 381
AcuI	CTGAAG	1 cut(s)	578
AfaI	GTAC	7 cut(s)	228, 299, 563, 622, 1046, 1143, 1155
AfiI	CCNNNNNNNGG	2 cut(s)	680, 940
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	8 cut(s)	52, 150, 234, 437, 442, 541, 680, 1177
AjiI	CACGTC	1 cut(s)	1135
AjnI	CCWGG	2 cut(s)	76, 974
Alw21I	GWGCWC	4 cut(s)	119, 371, 586, 835
Alw26I	GTCTC	2 cut(s)	101, 472
AlwI	GGATC	1 cut(s)	896
AoxI	GGCC	6 cut(s)	74, 101, 335, 381, 487, 745
ApeKI	GCWGC	3 cut(s)	248, 775, 1075
Asp718I	GGTACC	1 cut(s)	1141
AspS9I	GGNCC	1 cut(s)	745
AsuHPI	GGTGA	5 cut(s)	9, 187, 806, 977, 1022
BalI	TGGCCA	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	1141
BanII	GRGCYC	3 cut(s)	119, 586, 605
Bbv12I	GWGCWC	4 cut(s)	119, 371, 586, 835
BbvI	GCAGC	3 cut(s)	260, 787, 1087
BccI	CCATC	3 cut(s)	1011, 1153, 1162
BciT130I	CCWGG	2 cut(s)	78, 976
BclI	TGATCA	1 cut(s)	9
BcoDI	GTCTC	2 cut(s)	101, 472
BfaI	CTAG	6 cut(s)	86, 216, 339, 749, 1001, 1053
BfmI	CTRYAG	2 cut(s)	142, 264
BisI	GCNGC	3 cut(s)	249, 776, 1076
BlsI	GCNGC	3 cut(s)	250, 777, 1077
BmcAI	AGTACT	2 cut(s)	563, 1046
Bme1390I	CCNGG	2 cut(s)	78, 976
BmgBI	CACGTC	1 cut(s)	1135
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	7 cut(s)	83, 429, 521, 602, 746, 857, 1143
BmrFI	CCNGG	2 cut(s)	78, 976
BmrI	ACTGGG	1 cut(s)	812
BmsI	GCATC	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	812
BpuEI	CTTGAG	2 cut(s)	570, 578
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	680, 940
Bse1I	ACTGG	4 cut(s)	490, 640, 818, 967
Bse3DI	GCAATG	1 cut(s)	852
BseBI	CCWGG	2 cut(s)	78, 976
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	3 cut(s)	411, 1022, 1173
BseLI	CCNNNNNNNGG	2 cut(s)	680, 940
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	5 cut(s)	125, 407, 645, 939, 1062
BseNI	ACTGG	4 cut(s)	490, 640, 818, 967
BseXI	GCAGC	3 cut(s)	260, 787, 1087
BshFI	GGCC	6 cut(s)	76, 103, 337, 383, 489, 747
BshNI	GGYRCC	1 cut(s)	1141
BsiHKAI	GWGCWC	4 cut(s)	119, 371, 586, 835
BsiSI	CCGG	2 cut(s)	73, 100
BslI	CCNNNNNNNGG	2 cut(s)	680, 940
BsmAI	GTCTC	2 cut(s)	101, 472
BsnI	GGCC	6 cut(s)	76, 103, 337, 383, 489, 747
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	5 cut(s)	119, 371, 586, 605, 835
Bsp1407I	TGTACA	1 cut(s)	620
Bsp143I	GATC	2 cut(s)	9, 888
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	6 cut(s)	76, 103, 337, 383, 489, 747
BspCNI	CTCAG	5 cut(s)	124, 408, 646, 938, 1061
BspLI	GGNNCC	7 cut(s)	83, 429, 521, 602, 746, 857, 1143
BspMAI	CTGCAG	1 cut(s)	146
BspPI	GGATC	1 cut(s)	896
BspT107I	GGYRCC	1 cut(s)	1141
BspTNI	GGTCTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	852
BsrGI	TGTACA	1 cut(s)	620
BsrI	ACTGG	4 cut(s)	490, 640, 818, 967
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	9, 888
Bst2UI	CCWGG	2 cut(s)	78, 976
Bst4CI	ACNGT	3 cut(s)	226, 578, 840
Bst6I	CTCTTC	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	620
BstC8I	GCNNGC	2 cut(s)	931, 951
BstDEI	CTNAG	5 cut(s)	111, 416, 654, 925, 1048
BstF5I	GGATG	3 cut(s)	411, 1022, 1173
BstKTI	GATC	2 cut(s)	12, 891
BstMAI	GTCTC	2 cut(s)	101, 472
BstMBI	GATC	2 cut(s)	9, 888
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 254, 830, 1001
BstNI	CCWGG	2 cut(s)	78, 976
BstNSI	RCATGY	2 cut(s)	347, 413
BstSCI	CCNGG	2 cut(s)	76, 974
BstSFI	CTRYAG	2 cut(s)	142, 264
BstV1I	GCAGC	3 cut(s)	260, 787, 1087
BstXI	CCANNNNNNTGG	2 cut(s)	612, 1118
BsuRI	GGCC	6 cut(s)	76, 103, 337, 383, 489, 747
BtgZI	GCGATG	1 cut(s)	793
BtrI	CACGTC	1 cut(s)	1135
BtsCI	GGATG	3 cut(s)	411, 1022, 1173
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	931, 951
Cfr13I	GGNCC	1 cut(s)	745
Csp6I	GTAC	7 cut(s)	227, 298, 562, 621, 1045, 1142, 1154
CspCI	CAANNNNNGTGG	2 cut(s)	626, 661
CviAII	CATG	7 cut(s)	344, 410, 700, 935, 954, 1034, 1058
CviQI	GTAC	7 cut(s)	227, 298, 562, 621, 1045, 1142, 1154
DdeI	CTNAG	5 cut(s)	111, 416, 654, 925, 1048
DpnI	GATC	2 cut(s)	11, 890
DpnII	GATC	2 cut(s)	9, 888
EaeI	YGGCCR	3 cut(s)	74, 101, 381
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	2 cut(s)	117, 584
Eco147I	AGGCCT	1 cut(s)	337
Eco24I	GRGCYC	3 cut(s)	119, 586, 605
Eco31I	GGTCTC	1 cut(s)	101
Eco53kI	GAGCTC	2 cut(s)	117, 584
Eco57I	CTGAAG	1 cut(s)	578
EcoICRI	GAGCTC	2 cut(s)	117, 584
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRII	CCWGG	2 cut(s)	76, 974
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	3 cut(s)	119, 586, 605
FaeI	CATG	7 cut(s)	347, 413, 703, 938, 957, 1037, 1061
FalI	AAGNNNNNCTT	3 cut(s)	764, 796, 1156
FatI	CATG	7 cut(s)	343, 409, 699, 934, 953, 1033, 1057
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	249, 776, 1076
FokI	GGATG	2 cut(s)	418, 1029
FriOI	GRGCYC	3 cut(s)	119, 586, 605
Fsp4HI	GCNGC	3 cut(s)	249, 776, 1076
FspBI	CTAG	6 cut(s)	86, 216, 339, 749, 1001, 1053
GluI	GCNGC	3 cut(s)	249, 776, 1076
HaeIII	GGCC	6 cut(s)	76, 103, 337, 383, 489, 747
HapII	CCGG	2 cut(s)	73, 100
Hin1II	CATG	7 cut(s)	347, 413, 703, 938, 957, 1037, 1061
HindIII	AAGCTT	2 cut(s)	188, 542
HinfI	GANTC	4 cut(s)	260, 418, 650, 684
HpaII	CCGG	2 cut(s)	73, 100
HphI	GGTGA	5 cut(s)	9, 187, 806, 977, 1022
Hpy166II	GTNNAC	3 cut(s)	621, 623, 922
Hpy188I	TCNGA	6 cut(s)	114, 160, 319, 417, 655, 1150
Hpy188III	TCNNGA	1 cut(s)	1064
Hpy8I	GTNNAC	3 cut(s)	621, 623, 922
HpyAV	CCTTC	4 cut(s)	240, 674, 790, 1132
HpyCH4III	ACNGT	3 cut(s)	226, 578, 840
HpyCH4IV	ACGT	1 cut(s)	1134
HpyCH4V	TGCA	4 cut(s)	144, 248, 409, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 254, 830, 1001
HpyF3I	CTNAG	5 cut(s)	111, 416, 654, 925, 1048
HpySE526I	ACGT	1 cut(s)	1134
Hsp92II	CATG	7 cut(s)	347, 413, 703, 938, 957, 1037, 1061
KpnI	GGTACC	1 cut(s)	1145
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	9, 888
LmnI	GCTCC	8 cut(s)	81, 122, 366, 433, 449, 581, 600, 1113
Lsp1109I	GCAGC	3 cut(s)	260, 787, 1087
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	6 cut(s)	86, 216, 339, 749, 1001, 1053
MaeII	ACGT	1 cut(s)	1134
MaeIII	GTNAC	4 cut(s)	481, 695, 727, 965
MalI	GATC	2 cut(s)	11, 890
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	2 cut(s)	9, 888
MboII	GAAGA	1 cut(s)	343
MfeI	CAATTG	4 cut(s)	442, 606, 675, 982
MhlI	GDGCHC	5 cut(s)	119, 371, 586, 605, 835
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	7 cut(s)	211, 437, 442, 606, 675, 721, 982
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	8 cut(s)	34, 120, 137, 327, 845, 879, 1006, 1144
Mox20I	TGGCCA	1 cut(s)	383
Mph1103I	ATGCAT	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	896
Msp20I	TGGCCA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	73, 100
MspR9I	CCNGG	2 cut(s)	78, 976
MunI	CAATTG	4 cut(s)	442, 606, 675, 982
MvaI	CCWGG	2 cut(s)	78, 976
MwoI	GCNNNNNNNGC	4 cut(s)	180, 254, 830, 1001
NdeII	GATC	2 cut(s)	9, 888
NlaIII	CATG	7 cut(s)	347, 413, 703, 938, 957, 1037, 1061
NlaIV	GGNNCC	7 cut(s)	83, 429, 521, 602, 746, 857, 1143
NmuCI	GTSAC	4 cut(s)	481, 695, 727, 965
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	2 cut(s)	347, 413
PceI	AGGCCT	1 cut(s)	337
PciI	ACATGT	1 cut(s)	343
PfeI	GAWTC	3 cut(s)	260, 650, 684
PflFI	GACNNNGTC	1 cut(s)	1059
PfoI	TCCNGGA	1 cut(s)	974
PkrI	GCNGC	3 cut(s)	250, 777, 1077
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
PscI	ACATGT	1 cut(s)	343
Psp124BI	GAGCTC	2 cut(s)	119, 586
Psp6I	CCWGG	2 cut(s)	76, 974
PspGI	CCWGG	2 cut(s)	76, 974
PspN4I	GGNNCC	7 cut(s)	83, 429, 521, 602, 746, 857, 1143
PspPI	GGNCC	1 cut(s)	745
PstI	CTGCAG	1 cut(s)	146
PsyI	GACNNNGTC	1 cut(s)	1059
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	7 cut(s)	228, 299, 563, 622, 1046, 1143, 1155
RsaNI	GTAC	7 cut(s)	227, 298, 562, 621, 1045, 1142, 1154
RseI	CAYNNNNRTG	1 cut(s)	896
SacI	GAGCTC	2 cut(s)	119, 586
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	249, 776, 1076
Sau3AI	GATC	2 cut(s)	9, 888
Sau96I	GGNCC	1 cut(s)	745
ScaI	AGTACT	2 cut(s)	563, 1046
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	78, 976
SduI	GDGCHC	5 cut(s)	119, 371, 586, 605, 835
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	2 cut(s)	142, 264
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	2 cut(s)	557, 585
SmoI	CTYRAG	2 cut(s)	557, 585
Sse9I	AATT	7 cut(s)	211, 437, 442, 606, 675, 721, 982
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	6 cut(s)	86, 216, 339, 749, 1001, 1053
SstI	GAGCTC	2 cut(s)	119, 586
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	76, 974
TaaI	ACNGT	3 cut(s)	226, 578, 840
TaiI	ACGT	1 cut(s)	1137
TasI	AATT	7 cut(s)	211, 437, 442, 606, 675, 721, 982
TatI	WGTACW	4 cut(s)	297, 561, 620, 1044
TfiI	GAWTC	3 cut(s)	260, 650, 684
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	146
TseFI	GTSAC	4 cut(s)	481, 695, 727, 965
TseI	GCWGC	3 cut(s)	248, 775, 1075
Tsp45I	GTSAC	4 cut(s)	481, 695, 727, 965
TspDTI	ATGAA	1 cut(s)	853
TspRI	CASTG	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	1059
XceI	RCATGY	2 cut(s)	347, 413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XspI	CTAG	6 cut(s)	86, 216, 339, 749, 1001, 1053
ZrmI	AGTACT	2 cut(s)	563, 1046
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.