Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014585

Physical Location & Seq

Genomic Coordinates Reverse (-)

33414134 .. 33415748

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGTTGGCTCTTTGATACTGATTCTGTGGCTGAAAGGTGTGGGGGCCTAGATAATGTTGGGGATTTACAGAAGCAGCCCTTCTATCAGTTCCTAAAGGCAACTTACATTGCTCACCCAATTGCTCTTGGTGTTCTACTATATGCGATGGGAGGGTTCCCTTTCATTGTTTGGGGAATGGGTGTGAGGATTATTTGGGTGTACCACATTACTTGGCTGGTAAATTCAGCTTGCCATGTTTGGGGGGAGAAAGCATGGAAAACTGGTGATTTGTCTAGGAATAATTGGTGGGTGGCATTACTAGCATTTGGAGAGGGATGGCATAATAATCACCACGCTTTTGAGTACTCAGCTAGACATGGTCTGGATTGGTGGCAGCTTGACATGACTTGGTATGTTGTGAGATTGCTCCAAGCTGTTGGATTGGCCACCGATGTGAAGGTACCAACAGAGGTACAGAAACAAAGGATGGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0012505 GO:0016020 GO:0016053 GO:0019222 GO:0019752 GO:0031323 GO:0031324 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:0098827 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 ko03320 ko04152 ko04212 map01040 map01212 map03320 map04152 map04212

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

159

Amino Acids

18.35

Weight (kDa)

6.64

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	30 - 135	1.3e-09	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15850
fragaria_vesca	FvH4_6g29730
malus_domestica	MD17G1212000.v1.1
prunus_persica	Prupe.3G087200_v2.0.a1 Prupe.3G087200_v2.0.a1
pyrus_communis	pycom17g21690
rosa_chinensis	RchiOBHm_Chr2g0135421
rosa_laevigata	RLG00000019462
rosa_multiflora	Rmu_ssc0000187.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109260
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370200 Rh2BG381900 Rh2CG360500 Rh2CG360600 Rh2DG398200
rosa_wichuraiana	Rw2G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	223
AfaI	GTAC	4 cut(s)	203, 347, 444, 456
AfiI	CCNNNNNNNGG	1 cut(s)	241
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	4 cut(s)	230, 353, 379, 416
AluI	AGCT	4 cut(s)	230, 353, 379, 416
AoxI	GGCC	2 cut(s)	46, 426
ApeKI	GCWGC	2 cut(s)	76, 376
ApoI	RAATTY	1 cut(s)	223
Asp718I	GGTACC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	3 cut(s)	107, 278, 323
BalI	TGGCCA	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	442
BbvI	GCAGC	2 cut(s)	88, 388
BccI	CCATC	3 cut(s)	142, 312, 463
BfaI	CTAG	4 cut(s)	50, 276, 302, 354
BisI	GCNGC	2 cut(s)	77, 377
BlsI	GCNGC	2 cut(s)	78, 378
BmcAI	AGTACT	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	3 cut(s)	47, 158, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	323, 474
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	88, 388
BshFI	GGCC	2 cut(s)	48, 428
BshNI	GGYRCC	1 cut(s)	442
BslI	CCNNNNNNNGG	1 cut(s)	241
BsnI	GGCC	2 cut(s)	48, 428
BspANI	GGCC	2 cut(s)	48, 428
BspCNI	CTCAG	1 cut(s)	362
BspLI	GGNNCC	3 cut(s)	47, 158, 444
BspT107I	GGYRCC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	349
BstF5I	GGATG	2 cut(s)	323, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	88, 388
BstXI	CCANNNNNNTGG	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	48, 428
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	323, 474
Cac8I	GCNNGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	4 cut(s)	202, 346, 443, 455
CspCI	CAANNNNNGTGG	2 cut(s)	194, 229
CviAII	CATG	4 cut(s)	236, 255, 359, 385
CviQI	GTAC	4 cut(s)	202, 346, 443, 455
DdeI	CTNAG	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	426
EcoO109I	RGGNCCY	1 cut(s)	46
FaeI	CATG	4 cut(s)	239, 258, 362, 388
FaiI	YATR	8 cut(s)	142, 144, 237, 256, 324, 360, 386, 396
FalI	AAGNNNNNCTT	3 cut(s)	65, 97, 457
FatI	CATG	4 cut(s)	235, 254, 358, 384
Fnu4HI	GCNGC	2 cut(s)	77, 377
FokI	GGATG	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	77, 377
FspBI	CTAG	4 cut(s)	50, 276, 302, 354
GluI	GCNGC	2 cut(s)	77, 377
HaeIII	GGCC	2 cut(s)	48, 428
Hin1II	CATG	4 cut(s)	239, 258, 362, 388
HinfI	GANTC	1 cut(s)	23
HphI	GGTGA	3 cut(s)	107, 278, 323
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	91, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	349
Hsp92II	CATG	4 cut(s)	239, 258, 362, 388
KpnI	GGTACC	1 cut(s)	446
LmnI	GCTCC	1 cut(s)	414
LpnPI	CCDG	3 cut(s)	203, 249, 350
Lsp1109I	GCAGC	2 cut(s)	88, 388
MaeI	CTAG	4 cut(s)	50, 276, 302, 354
MfeI	CAATTG	1 cut(s)	120
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	3 cut(s)	120, 223, 283
MluNI	TGGCCA	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	4 cut(s)	146, 180, 307, 445
Mox20I	TGGCCA	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	434
Msp20I	TGGCCA	1 cut(s)	428
MunI	CAATTG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	239, 258, 362, 388
NlaIV	GGNNCC	3 cut(s)	47, 158, 444
OliI	CACNNNNGTG	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	23
PflFI	GACNNNGTC	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	78, 378
PspN4I	GGNNCC	3 cut(s)	47, 158, 444
PspPI	GGNCC	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	360
RsaI	GTAC	4 cut(s)	203, 347, 444, 456
RsaNI	GTAC	4 cut(s)	202, 346, 443, 455
RseI	CAYNNNNRTG	1 cut(s)	434
SatI	GCNGC	2 cut(s)	77, 377
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	347
SetI	ASST	7 cut(s)	41, 232, 355, 381, 418, 444, 456
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	120, 223, 283
SspMI	CTAG	4 cut(s)	50, 276, 302, 354
TasI	AATT	3 cut(s)	120, 223, 283
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	23
TseI	GCWGC	2 cut(s)	76, 376
TspDTI	ATGAA	1 cut(s)	154
Tth111I	GACNNNGTC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	223
XspI	CTAG	4 cut(s)	50, 276, 302, 354
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.