Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014585

Physical Location & Seq

Genomic Coordinates Forward (+)

52270881 .. 52272600

Gene Structure 1720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019462

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGGTTTGATCACATCACCACCATCCCATCCCAAAACCCACCATTATTTCAATCTCCACCGCTCATTTCGCCGGCCAGGGAGCCCAGTATTTGGTCTCCGGCCACTTCCTCAGAGCTCCAAGGTCCTCAACTTTGTTCATTGCAGTTCAAAACAATCAGAACCCAATAAATGCTTCTCAAGCACCAAGCTTTTCACCCATTTTCTCACCAACTCTAATAGAACACTACCTTCCATAACCACCAATGCAGCTGTGGCAGAATCCACAGAACCAGAGCCAGAGAAATATAAGAGAATTATATTATCTGATGTGATTGTGAAGAGGCCTAGATATTTGTTTAAGGGGAGAAAATGGAACTCAAAGGATCTGGCCACAGCTGGTGTTGTGGTGGGAATGCATGTTCTGAGTCTTTTTGCTCCTTTTCAATTCAATTGGGGAGCTTTTTGGGTGGCAGTGTCACTTTATGTTGTGACTGGTCTATTTGGTATCACTCTTTCTTTTCATAGGAATCTTTCACATCGGAGTTTCAAGCTTCCCAAATGGCTTGAGTACTTGTTTGCTTATTTTGGAGCTCAAGCACTTCAGGGGAGCCCAATTGATTGGGTTTGTACACATAGGTACCACCACCAGTTTTGTGATTCTGAGAAAGACCCACATAGCCCAGTTGAAGGATTCTGGTACAGTCACATGAGTTGGCTCTTTGATACTGATTCTGTGGCTGAAAGGTGCGGGGGCCTAGATAATGTTGGGGATTTACAGAAGCAGCCCTTCTATCAGTTCCTAAAGGCAACTTACATTGCTCACCCAATTGCTCTTGGTGTTCTACTATATGCGATGGGAGGGTTCCCTTTCATTGTTTGGGGAATGGGTGTGAGGATTATTTGGGTGTACCACATTACTTGGCTGGTAAATTCAGCTTGCCATGTTTGGGGAGAGAAAGCATGGAAAACTGGTGATTTGTCTAGGAACAATTGGTGGGTGGCATTACTAGCATTTGGAGAGGGATGGCATAATAATCACCACGCTTTTGAGTACTCAGCTAGACATGGTCTGGATTGGTGGCAGCTTGACATGACTTGGTATGTTGTGAGATTGCTCCAAGCTATTGGATTGGCCACCGATGTGAAGGTACCAACAGAGGTACAGAAACAAAGGATGGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0012505 GO:0016020 GO:0016053 GO:0019222 GO:0019752 GO:0031323 GO:0031324 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:0098827 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 ko03320 ko04152 ko04212 map01040 map01212 map03320 map04152 map04212

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

389

Amino Acids

44.62

Weight (kDa)

9.39

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	145 - 364	6.5e-19	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15850
fragaria_vesca	FvH4_6g29730
malus_domestica	MD17G1212000.v1.1
prunus_persica	Prupe.3G087200_v2.0.a1 Prupe.3G087200_v2.0.a1
pyrus_communis	pycom17g21690
rosa_chinensis	RchiOBHm_Chr2g0135421
rosa_laevigata	RLG00000019462
rosa_multiflora	Rmu_ssc0000187.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109260
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370200 Rh2BG381900 Rh2CG360500 Rh2CG360600 Rh2DG398200
rosa_wichuraiana	Rw2G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	618, 1129
AccB1I	GGYRCC	2 cut(s)	618, 1129
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	63
AciI	CCGC	2 cut(s)	61, 729
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	4 cut(s)	74, 101, 369, 1113
AcsI	RAATTY	1 cut(s)	910
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	8 cut(s)	551, 610, 620, 680, 890, 1034, 1131, 1143
AfiI	CCNNNNNNNGG	3 cut(s)	92, 668, 928
AgsI	TTSAA	6 cut(s)	52, 150, 425, 430, 529, 668
AjnI	CCWGG	1 cut(s)	76
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AleI	CACNNNNGTG	1 cut(s)	1121
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
Alw21I	GWGCWC	2 cut(s)	119, 574
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	6 cut(s)	74, 101, 323, 369, 733, 1113
ApeKI	GCWGC	3 cut(s)	248, 763, 1063
ApoI	RAATTY	1 cut(s)	910
Asp718I	GGTACC	2 cut(s)	618, 1129
AspS9I	GGNCC	2 cut(s)	124, 733
AsuHPI	GGTGA	6 cut(s)	9, 187, 199, 794, 965, 1010
AvaII	GGWCC	1 cut(s)	124
BaeI	ACNNNNGTAYC	2 cut(s)	602, 635
BalI	TGGCCA	2 cut(s)	371, 1115
BanI	GGYRCC	2 cut(s)	618, 1129
BanII	GRGCYC	4 cut(s)	86, 119, 574, 593
Bbv12I	GWGCWC	2 cut(s)	119, 574
BbvI	GCAGC	3 cut(s)	260, 775, 1075
BccI	CCATC	5 cut(s)	31, 36, 829, 999, 1150
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	5 cut(s)	327, 737, 963, 989, 1041
BisI	GCNGC	3 cut(s)	249, 764, 1064
BlsI	GCNGC	3 cut(s)	250, 765, 1065
BmcAI	AGTACT	2 cut(s)	551, 1034
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	124, 733
BmiI	GGNNCC	6 cut(s)	83, 590, 620, 734, 845, 1131
BmrFI	CCNGG	1 cut(s)	78
BmrI	ACTGGG	2 cut(s)	80, 656
BmuI	ACTGGG	2 cut(s)	80, 656
BpuEI	CTTGAG	3 cut(s)	163, 558, 566
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	77, 120
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 668, 928
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	5 cut(s)	86, 478, 628, 662, 955
Bse3DI	GCAATG	2 cut(s)	139, 795
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	77, 120
BseGI	GGATG	4 cut(s)	23, 28, 1010, 1161
BseLI	CCNNNNNNNGG	3 cut(s)	92, 668, 928
BseMI	GCAATG	2 cut(s)	139, 795
BseMII	CTCAG	4 cut(s)	125, 395, 633, 1050
BseNI	ACTGG	5 cut(s)	86, 478, 628, 662, 955
BseXI	GCAGC	3 cut(s)	260, 775, 1075
BshFI	GGCC	6 cut(s)	76, 103, 325, 371, 735, 1115
BshNI	GGYRCC	2 cut(s)	618, 1129
BsiHKAI	GWGCWC	2 cut(s)	119, 574
BsiSI	CCGG	2 cut(s)	73, 100
BslI	CCNNNNNNNGG	3 cut(s)	92, 668, 928
BsmAI	GTCTC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	6 cut(s)	76, 103, 325, 371, 735, 1115
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	4 cut(s)	86, 119, 574, 593
Bsp1407I	TGTACA	1 cut(s)	608
Bsp143I	GATC	2 cut(s)	9, 364
BspACI	CCGC	2 cut(s)	61, 729
BspANI	GGCC	6 cut(s)	76, 103, 325, 371, 735, 1115
BspCNI	CTCAG	4 cut(s)	124, 396, 634, 1049
BspLI	GGNNCC	6 cut(s)	83, 590, 620, 734, 845, 1131
BspPI	GGATC	1 cut(s)	372
BspT107I	GGYRCC	2 cut(s)	618, 1129
BspTNI	GGTCTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	63
BsrDI	GCAATG	2 cut(s)	139, 795
BsrFI	RCCGGY	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	608
BsrI	ACTGG	5 cut(s)	86, 478, 628, 662, 955
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	77, 120
BssMI	GATC	2 cut(s)	9, 364
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	683
Bst6I	CTCTTC	1 cut(s)	314
BstAUI	TGTACA	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	74, 919
BstDEI	CTNAG	4 cut(s)	111, 404, 642, 1036
BstF5I	GGATG	4 cut(s)	23, 28, 1010, 1161
BstKTI	GATC	2 cut(s)	12, 367
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	2 cut(s)	9, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 180, 254, 989
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	3 cut(s)	260, 775, 1075
BstX2I	RGATCY	1 cut(s)	364
BstXI	CCANNNNNNTGG	2 cut(s)	600, 1106
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	6 cut(s)	76, 103, 325, 371, 735, 1115
BtgZI	GCGATG	1 cut(s)	848
BtsCI	GGATG	4 cut(s)	23, 28, 1010, 1161
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	74, 919
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	124, 733
Csp6I	GTAC	8 cut(s)	550, 609, 619, 679, 889, 1033, 1130, 1142
CspCI	CAANNNNNGTGG	4 cut(s)	614, 649, 881, 916
CviAII	CATG	6 cut(s)	398, 688, 923, 942, 1046, 1072
CviQI	GTAC	8 cut(s)	550, 609, 619, 679, 889, 1033, 1130, 1142
DdeI	CTNAG	4 cut(s)	111, 404, 642, 1036
DpnI	GATC	2 cut(s)	11, 366
DpnII	GATC	2 cut(s)	9, 364
EaeI	YGGCCR	4 cut(s)	74, 101, 369, 1113
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Ecl136II	GAGCTC	2 cut(s)	117, 572
Eco130I	CCWWGG	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	325
Eco24I	GRGCYC	4 cut(s)	86, 119, 574, 593
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	2 cut(s)	117, 572
Eco57I	CTGAAG	1 cut(s)	566
EcoICRI	GAGCTC	2 cut(s)	117, 572
EcoO109I	RGGNCCY	2 cut(s)	124, 733
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	4 cut(s)	86, 119, 574, 593
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	6 cut(s)	401, 691, 926, 945, 1049, 1075
FalI	AAGNNNNNCTT	3 cut(s)	752, 784, 1144
FatI	CATG	6 cut(s)	397, 687, 922, 941, 1045, 1071
FauI	CCCGC	1 cut(s)	722
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	249, 764, 1064
FokI	GGATG	3 cut(s)	10, 15, 1017
FriOI	GRGCYC	4 cut(s)	86, 119, 574, 593
Fsp4HI	GCNGC	3 cut(s)	249, 764, 1064
FspBI	CTAG	5 cut(s)	327, 737, 963, 989, 1041
GluI	GCNGC	3 cut(s)	249, 764, 1064
HaeIII	GGCC	6 cut(s)	76, 103, 325, 371, 735, 1115
HapII	CCGG	2 cut(s)	73, 100
Hin1II	CATG	6 cut(s)	401, 691, 926, 945, 1049, 1075
HindIII	AAGCTT	2 cut(s)	188, 530
HinfI	GANTC	6 cut(s)	260, 406, 508, 638, 672, 710
HpaII	CCGG	2 cut(s)	73, 100
HphI	GGTGA	6 cut(s)	9, 187, 199, 794, 965, 1010
Hpy166II	GTNNAC	2 cut(s)	611, 889
Hpy188I	TCNGA	6 cut(s)	114, 160, 307, 405, 522, 643
Hpy188III	TCNNGA	1 cut(s)	1052
Hpy8I	GTNNAC	2 cut(s)	611, 889
HpyAV	CCTTC	4 cut(s)	240, 662, 778, 1120
HpyCH4III	ACNGT	1 cut(s)	683
HpyCH4V	TGCA	3 cut(s)	144, 248, 397
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 180, 254, 989
HpyF3I	CTNAG	4 cut(s)	111, 404, 642, 1036
Hsp92II	CATG	6 cut(s)	401, 691, 926, 945, 1049, 1075
KpnI	GGTACC	2 cut(s)	622, 1133
KroI	GCCGGC	1 cut(s)	72
KroNI	GCCGGC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	9, 364
LmnI	GCTCC	7 cut(s)	81, 122, 421, 437, 569, 588, 1101
Lsp1109I	GCAGC	3 cut(s)	260, 775, 1075
MaeI	CTAG	5 cut(s)	327, 737, 963, 989, 1041
MaeIII	GTNAC	3 cut(s)	456, 469, 683
MalI	GATC	2 cut(s)	11, 366
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	2 cut(s)	9, 364
MboII	GAAGA	1 cut(s)	331
MfeI	CAATTG	4 cut(s)	430, 594, 807, 970
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	4 cut(s)	86, 119, 574, 593
MlsI	TGGCCA	2 cut(s)	371, 1115
MluCI	AATT	7 cut(s)	294, 425, 430, 594, 807, 910, 970
MluNI	TGGCCA	2 cut(s)	371, 1115
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	7 cut(s)	120, 137, 315, 833, 867, 994, 1132
Mox20I	TGGCCA	2 cut(s)	371, 1115
Mph1103I	ATGCAT	1 cut(s)	399
MroNI	GCCGGC	1 cut(s)	72
MscI	TGGCCA	2 cut(s)	371, 1115
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	1121
Msp20I	TGGCCA	2 cut(s)	371, 1115
MspA1I	CMGCKG	2 cut(s)	251, 377
MspI	CCGG	2 cut(s)	73, 100
MspR9I	CCNGG	1 cut(s)	78
MunI	CAATTG	4 cut(s)	430, 594, 807, 970
Mva1269I	GAATGC	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	69, 180, 254, 989
NaeI	GCCGGC	1 cut(s)	74
NdeII	GATC	2 cut(s)	9, 364
NgoMIV	GCCGGC	1 cut(s)	72
NlaIII	CATG	6 cut(s)	401, 691, 926, 945, 1049, 1075
NlaIV	GGNNCC	6 cut(s)	83, 590, 620, 734, 845, 1131
NmuCI	GTSAC	3 cut(s)	456, 469, 683
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	401
OliI	CACNNNNGTG	1 cut(s)	1121
PceI	AGGCCT	1 cut(s)	325
PctI	GAATGC	1 cut(s)	399
PdiI	GCCGGC	1 cut(s)	74
PfeI	GAWTC	5 cut(s)	260, 508, 638, 672, 710
PflFI	GACNNNGTC	1 cut(s)	1047
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	250, 765, 1065
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PpuMI	RGGWCCY	1 cut(s)	124
Psp124BI	GAGCTC	2 cut(s)	119, 574
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	6 cut(s)	83, 590, 620, 734, 845, 1131
PspPI	GGNCC	2 cut(s)	124, 733
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	1047
PvuII	CAGCTG	2 cut(s)	251, 377
RsaI	GTAC	8 cut(s)	551, 610, 620, 680, 890, 1034, 1131, 1143
RsaNI	GTAC	8 cut(s)	550, 609, 619, 679, 889, 1033, 1130, 1142
RseI	CAYNNNNRTG	1 cut(s)	1121
SacI	GAGCTC	2 cut(s)	119, 574
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	249, 764, 1064
Sau3AI	GATC	2 cut(s)	9, 364
Sau96I	GGNCC	2 cut(s)	124, 733
ScaI	AGTACT	2 cut(s)	551, 1034
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	4 cut(s)	86, 119, 574, 593
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	1121
SmlI	CTYRAG	3 cut(s)	178, 545, 573
SmoI	CTYRAG	3 cut(s)	178, 545, 573
Sse9I	AATT	7 cut(s)	294, 425, 430, 594, 807, 910, 970
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	2 cut(s)	61, 729
SspMI	CTAG	5 cut(s)	327, 737, 963, 989, 1041
SstI	GAGCTC	2 cut(s)	119, 574
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	683
TasI	AATT	7 cut(s)	294, 425, 430, 594, 807, 910, 970
TatI	WGTACW	3 cut(s)	549, 608, 1032
TfiI	GAWTC	5 cut(s)	260, 508, 638, 672, 710
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	459
TseFI	GTSAC	3 cut(s)	456, 469, 683
TseI	GCWGC	3 cut(s)	248, 763, 1063
Tsp45I	GTSAC	3 cut(s)	456, 469, 683
TspDTI	ATGAA	3 cut(s)	128, 491, 841
TspRI	CASTG	1 cut(s)	459
Tth111I	GACNNNGTC	1 cut(s)	1047
Van91I	CCANNNNNTGG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	910
XceI	RCATGY	1 cut(s)	401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XspI	CTAG	5 cut(s)	327, 737, 963, 989, 1041
ZrmI	AGTACT	2 cut(s)	551, 1034
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.