Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0014585

Physical Location & Seq

Genomic Coordinates Reverse (-)

25919173 .. 25921797

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1212000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGATTTGATCACATCACCACAGTCCAATCCCAAAACCCACCATTGTTTTCATCTCCGCCGCACGTTTCTCCGGCCGGGAAGACCAGTTTTGGGTCTCAGGCCATTGCCCCAGAGCTCCAAGCTCCTCACTTTTGATCATTGCAACTCAAAACAATCGCAACCCAATAAGTTTTTAACAAGCAGAAAGCTTTTCAGCCTTTTTCTTACCAATTCTAATAGAAAAGCATCAGCAATAAGCACCAATGCAGAATTGTCTGAAGCCCTGGAACCAGAACTAACAGAGACAGGAGAGTACAAGTTTAAGAGAATTCTACTTTCTGATGTGATTGTGAAGAGGCCGAAGAATGTGTTTATGGGGAGAAAGTGGATTCCAATGGACGTGGCCACAGCTGGTGTGGTAGTGGCAATGCATTTGCTCAGCCTTTTTGCACCTTTTCAATTCAATTGGGGAGCTTTTTGGGTGGCAATGGCACTTTATGTTGTGACTGGTCTATTTGGAATCACTCTTTCTTTTCATAGGAATCTCTCACACAAGAGTTTCAAGCTCCCCAAGTTTCTTGAGTACTTATTTGCTTATTGTGGATCCCAAGCACTTCAGGGGAGCCCAATTGATTGGGTGAGTGTGCATAGGTACCACCACCAGTTCTGTGATTCTGAGAAAGACCCACATAGCCCAATTGAAGGTTTCTGGTACAGTCACATGAGTTGGCTCTTTGATACCAATTCTGTGAATGAAAGGTGTGGGGGATCAAATAATGCTGGAGATCTAGAGAAGCAGCCCTTCTATCAGCTCCTGCATAAAACTTACATTGCTCACCCTATTGCTCTTGGACTTGTACTATATGCAATGGGAGGATTCCCATTCCTTGTGTGGGGAATGGGTGTGAGGACTATATGGGTATACCACATTACTTGGCTTGTTAACTCAGCTTGCCACGTTTGGGGAAACAGAGCATGGAATACTGGTGACTTGTCTAGGAACAATTGGTGGGTGGCAATACTAGCGTTTGGAGAGGGTTGGCACAACAATCACCATGCATTTGAGTACTCGGCTAGGCATGGCCTGAAATGGTGGCAGCTTGACATGACATGGTACGTCGTAAGATTTCTCCAAGCTATTGGATTGGCAACTGATGTGAAGCTACCAACTGAGGCCCACAAACAAAAGATGGCTTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0012505 GO:0016020 GO:0016053 GO:0019222 GO:0019752 GO:0031323 GO:0031324 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:0098827 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 ko03320 ko04152 ko04212 map01040 map01212 map03320 map04152 map04212

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

395

Amino Acids

45.33

Weight (kDa)

9.47

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	153 - 369	3.1e-17	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15850
fragaria_vesca	FvH4_6g29730
malus_domestica	MD17G1212000.v1.1
prunus_persica	Prupe.3G087200_v2.0.a1 Prupe.3G087200_v2.0.a1
pyrus_communis	pycom17g21690
rosa_chinensis	RchiOBHm_Chr2g0135421
rosa_laevigata	RLG00000019462
rosa_multiflora	Rmu_ssc0000187.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109260
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370200 Rh2BG381900 Rh2CG360500 Rh2CG360600 Rh2DG398200
rosa_wichuraiana	Rw2G030670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	633
AccI	GTMKAC	1 cut(s)	903
AciI	CCGC	2 cut(s)	58, 61
AclWI	GGATC	3 cut(s)	579, 592, 757
AcoI	YGGCCR	2 cut(s)	74, 384
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	2 cut(s)	279, 581
AfaI	GTAC	7 cut(s)	296, 566, 635, 695, 840, 1049, 1097
AfiI	CCNNNNNNNGG	4 cut(s)	92, 683, 874, 943
AgsI	TTSAA	5 cut(s)	440, 445, 544, 683, 1180
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	264
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	101, 278
AlwI	GGATC	3 cut(s)	579, 592, 757
AlwNI	CAGNNNCTG	1 cut(s)	796
AoxI	GGCC	6 cut(s)	74, 101, 338, 384, 1063, 1155
ApeKI	GCWGC	2 cut(s)	778, 1078
ApoI	RAATTY	1 cut(s)	309
Asp718I	GGTACC	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	1156
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	5 cut(s)	9, 631, 809, 980, 1025
BalI	TGGCCA	1 cut(s)	386
BamHI	GGATCC	1 cut(s)	584
BanI	GGYRCC	1 cut(s)	633
BanII	GRGCYC	2 cut(s)	119, 608
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	790, 1090
BccI	CCATC	1 cut(s)	1165
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	2 cut(s)	9, 136
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	101, 278
BfaI	CTAG	4 cut(s)	770, 978, 1004, 1056
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	3 cut(s)	61, 779, 1079
BlpI	GCTNAGC	1 cut(s)	419
BlsI	GCNGC	3 cut(s)	62, 780, 1080
BmcAI	AGTACT	2 cut(s)	566, 1049
Bme1390I	CCNGG	2 cut(s)	78, 266
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	1156
BmiI	GGNNCC	4 cut(s)	270, 586, 605, 635
BmrFI	CCNGG	2 cut(s)	78, 266
BmsI	GCATC	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	783
Bpu1102I	GCTNAGC	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 683, 874, 943
Bse1I	ACTGG	4 cut(s)	86, 493, 643, 970
Bse3DI	GCAATG	6 cut(s)	104, 139, 414, 474, 810, 855
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	4 cut(s)	92, 683, 874, 943
BseMI	GCAATG	6 cut(s)	104, 139, 414, 474, 810, 855
BseMII	CTCAG	5 cut(s)	112, 433, 648, 942, 1143
BseNI	ACTGG	4 cut(s)	86, 493, 643, 970
BseRI	GAGGAG	1 cut(s)	116
BseX3I	CGGCCG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	790, 1090
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	6 cut(s)	76, 103, 340, 386, 1065, 1157
BshNI	GGYRCC	1 cut(s)	633
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	73, 77
BslI	CCNNNNNNNGG	4 cut(s)	92, 683, 874, 943
BsmAI	GTCTC	2 cut(s)	101, 278
BsnI	GGCC	6 cut(s)	76, 103, 340, 386, 1065, 1157
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	119, 608
Bsp143I	GATC	5 cut(s)	9, 136, 584, 749, 766
Bsp1720I	GCTNAGC	1 cut(s)	419
BspACI	CCGC	2 cut(s)	58, 61
BspANI	GGCC	6 cut(s)	76, 103, 340, 386, 1065, 1157
BspCNI	CTCAG	5 cut(s)	111, 432, 649, 941, 1144
BspLI	GGNNCC	4 cut(s)	270, 586, 605, 635
BspPI	GGATC	3 cut(s)	579, 592, 757
BspT107I	GGYRCC	1 cut(s)	633
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	6 cut(s)	104, 139, 414, 474, 810, 855
BsrI	ACTGG	4 cut(s)	86, 493, 643, 970
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	5 cut(s)	9, 136, 584, 749, 766
BssNAI	GTATAC	1 cut(s)	904
Bst1107I	GTATAC	1 cut(s)	904
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	24, 698
Bst6I	CTCTTC	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	934
BstDEI	CTNAG	5 cut(s)	98, 419, 657, 928, 1152
BstKTI	GATC	5 cut(s)	12, 139, 587, 752, 769
BstMAI	GTCTC	2 cut(s)	101, 278
BstMBI	GATC	5 cut(s)	9, 136, 584, 749, 766
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	1004
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	76, 264
BstV1I	GCAGC	2 cut(s)	790, 1090
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	2 cut(s)	584, 766
BstXI	CCANNNNNNTGG	2 cut(s)	615, 1121
BstYI	RGATCY	2 cut(s)	584, 766
BstZ17I	GTATAC	1 cut(s)	904
BstZI	CGGCCG	1 cut(s)	74
BsuRI	GGCC	6 cut(s)	76, 103, 340, 386, 1065, 1157
BtrI	CACGTC	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	934
CaiI	CAGNNNCTG	1 cut(s)	796
Cfr13I	GGNCC	1 cut(s)	1156
Csp6I	GTAC	7 cut(s)	295, 565, 634, 694, 839, 1048, 1096
CspCI	CAANNNNNGTGG	4 cut(s)	363, 398, 896, 931
CviAII	CATG	6 cut(s)	703, 957, 1037, 1061, 1087, 1092
CviQI	GTAC	7 cut(s)	295, 565, 634, 694, 839, 1048, 1096
DdeI	CTNAG	5 cut(s)	98, 419, 657, 928, 1152
DpnI	GATC	5 cut(s)	11, 138, 586, 751, 768
DpnII	GATC	5 cut(s)	9, 136, 584, 749, 766
EaeI	YGGCCR	2 cut(s)	74, 384
EagI	CGGCCG	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	74
Eco24I	GRGCYC	2 cut(s)	119, 608
Eco31I	GGTCTC	1 cut(s)	101
Eco52I	CGGCCG	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	279, 581
EcoICRI	GAGCTC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	264
EcoT22I	ATGCAT	2 cut(s)	414, 1042
EcoT38I	GRGCYC	2 cut(s)	119, 608
FaeI	CATG	6 cut(s)	706, 960, 1040, 1064, 1090, 1095
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FatI	CATG	6 cut(s)	702, 956, 1036, 1060, 1086, 1091
FbaI	TGATCA	2 cut(s)	9, 136
FblI	GTMKAC	1 cut(s)	903
Fnu4HI	GCNGC	3 cut(s)	61, 779, 1079
FriOI	GRGCYC	2 cut(s)	119, 608
Fsp4HI	GCNGC	3 cut(s)	61, 779, 1079
FspBI	CTAG	4 cut(s)	770, 978, 1004, 1056
GluI	GCNGC	3 cut(s)	61, 779, 1079
GsuI	CTGGAG	1 cut(s)	783
HaeIII	GGCC	6 cut(s)	76, 103, 340, 386, 1065, 1157
HapII	CCGG	2 cut(s)	73, 77
Hin1II	CATG	6 cut(s)	706, 960, 1040, 1064, 1090, 1095
HincII	GTYRAC	1 cut(s)	925
HindII	GTYRAC	1 cut(s)	925
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	5 cut(s)	370, 501, 523, 653, 858
HpaI	GTTAAC	1 cut(s)	925
HpaII	CCGG	2 cut(s)	73, 77
HphI	GGTGA	5 cut(s)	9, 631, 809, 980, 1025
Hpy166II	GTNNAC	2 cut(s)	904, 925
Hpy188I	TCNGA	3 cut(s)	259, 322, 658
Hpy188III	TCNNGA	2 cut(s)	560, 770
Hpy8I	GTNNAC	2 cut(s)	904, 925
Hpy99I	CGWCG	1 cut(s)	1103
HpyAV	CCTTC	2 cut(s)	677, 793
HpyCH4III	ACNGT	2 cut(s)	24, 698
HpyCH4IV	ACGT	4 cut(s)	65, 381, 939, 1098
HpyCH4V	TGCA	8 cut(s)	144, 248, 412, 431, 628, 799, 848, 1040
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1004
HpyF3I	CTNAG	5 cut(s)	98, 419, 657, 928, 1152
HpySE526I	ACGT	4 cut(s)	65, 381, 939, 1098
Hsp92II	CATG	6 cut(s)	706, 960, 1040, 1064, 1090, 1095
KpnI	GGTACC	1 cut(s)	637
Ksp22I	TGATCA	2 cut(s)	9, 136
KspAI	GTTAAC	1 cut(s)	925
Kzo9I	GATC	5 cut(s)	9, 136, 584, 749, 766
LmnI	GCTCC	6 cut(s)	122, 129, 452, 552, 603, 798
Lsp1109I	GCAGC	2 cut(s)	790, 1090
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	4 cut(s)	770, 978, 1004, 1056
MaeII	ACGT	4 cut(s)	65, 381, 939, 1098
MaeIII	GTNAC	3 cut(s)	484, 698, 968
MalI	GATC	5 cut(s)	11, 138, 586, 751, 768
MboI	GATC	5 cut(s)	9, 136, 584, 749, 766
MboII	GAAGA	3 cut(s)	93, 346, 355
MfeI	CAATTG	4 cut(s)	445, 609, 678, 985
MflI	RGATCY	2 cut(s)	584, 766
MhlI	GDGCHC	2 cut(s)	119, 608
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	9 cut(s)	211, 251, 309, 440, 445, 609, 678, 724, 985
MluNI	TGGCCA	1 cut(s)	386
MnlI	CCTC	6 cut(s)	137, 330, 848, 882, 1009, 1147
Mox20I	TGGCCA	1 cut(s)	386
Mph1103I	ATGCAT	2 cut(s)	414, 1042
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	3 cut(s)	176, 303, 924
Msp20I	TGGCCA	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	2 cut(s)	73, 77
MspR9I	CCNGG	2 cut(s)	78, 266
MunI	CAATTG	4 cut(s)	445, 609, 678, 985
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	1004
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	5 cut(s)	9, 136, 584, 749, 766
NlaIII	CATG	6 cut(s)	706, 960, 1040, 1064, 1090, 1095
NlaIV	GGNNCC	4 cut(s)	270, 586, 605, 635
NmeAIII	GCCGAG	1 cut(s)	1031
NmuCI	GTSAC	3 cut(s)	484, 698, 968
NsiI	ATGCAT	2 cut(s)	414, 1042
PfeI	GAWTC	5 cut(s)	370, 501, 523, 653, 858
PkrI	GCNGC	3 cut(s)	62, 780, 1080
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	4 cut(s)	270, 586, 605, 635
PspPI	GGNCC	1 cut(s)	1156
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	2 cut(s)	584, 766
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	7 cut(s)	296, 566, 635, 695, 840, 1049, 1097
RsaNI	GTAC	7 cut(s)	295, 565, 634, 694, 839, 1048, 1096
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	176, 303, 924
SatI	GCNGC	3 cut(s)	61, 779, 1079
Sau3AI	GATC	5 cut(s)	9, 136, 584, 749, 766
Sau96I	GGNCC	1 cut(s)	1156
ScaI	AGTACT	2 cut(s)	566, 1049
ScrFI	CCNGG	2 cut(s)	78, 266
SduI	GDGCHC	2 cut(s)	119, 608
SfaNI	GCATC	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	9 cut(s)	211, 251, 309, 440, 445, 609, 678, 724, 985
SsiI	CCGC	2 cut(s)	58, 61
SspMI	CTAG	4 cut(s)	770, 978, 1004, 1056
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	76, 264
TaaI	ACNGT	2 cut(s)	24, 698
TaiI	ACGT	4 cut(s)	68, 384, 942, 1101
TasI	AATT	9 cut(s)	211, 251, 309, 440, 445, 609, 678, 724, 985
TatI	WGTACW	4 cut(s)	294, 564, 838, 1047
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	5 cut(s)	370, 501, 523, 653, 858
Tru1I	TTAA	3 cut(s)	176, 303, 924
Tru9I	TTAA	3 cut(s)	176, 303, 924
TseFI	GTSAC	3 cut(s)	484, 698, 968
TseI	GCWGC	2 cut(s)	778, 1078
Tsp45I	GTSAC	3 cut(s)	484, 698, 968
TspDTI	ATGAA	3 cut(s)	41, 506, 750
XapI	RAATTY	1 cut(s)	309
XbaI	TCTAGA	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	2 cut(s)	394, 870
XmiI	GTMKAC	1 cut(s)	903
XspI	CTAG	4 cut(s)	770, 978, 1004, 1056
ZrmI	AGTACT	2 cut(s)	566, 1049
Zsp2I	ATGCAT	2 cut(s)	414, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.