AT3G16050

pyridoxal biosynthesis protein PDX1.2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014311
Physical Location & Seq
Reverse (-)
5443950 .. 5445329
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16050.1

Sequence Viewer

Length: 945 bp
ATGGCGGATCAAGCTATGACGGATCAAGATCAAGGAGCTGTTACTCTCTACAGCGGCACAGCCATTACCGACGCGAAGAAAAACCATCCGTTCTCTGTTAAGGTCGGATTAGCTCAGGTACTTCGTGGCGGCGCCATTGTTGAAGTTTCCTCGGTTAACCAAGCTAAGCTCGCTGAATCCGCCGGCGCATGTTCTGTAATCGTCTCAGATCCGGTTCGATCTCGCGGCGGTGTTCGTCGTATGCCGGATCCGGTTCTCATCAAAGAGGTAAAACGAGCTGTGTCTGTACCTGTGATGGCACGAGCTCGCGTTGGTCATTTTGTTGAGGCTCAGATCTTGGAATCTCTTGCGGTTGATTACATTGACGAGAGCGAGATTATCTCTGTTGCGGATGATGATCATTTCATCAACAAACATAATTTCCGATCTCCGTTCATTTGTGGTTGCCGTGATACAGGAGAAGCTTTGAGGAGAATCAGAGAAGGTGCTGCTATGATTAGGATCCAAGGAGATTTAACCGCAACAGGTAACATTGCAGAGACTGTGAAGAACGTTAGGTCATTGATGGGTGAAGTTAGAGTCTTGAACAACATGGATGATGATGAGGTGTTCACGTTTGCTAAGAAGATTTCAGCACCGTATGATCTTGTGGCTCAGACTAAGCAGATGGGTAGGGTTCCGGTTGTTCAGTTTGCATCAGGTGGGATCACGACTCCTGCTGATGCAGCTTTGATGATGCAGCTAGGTTGTGATGGGGTTTTTGTGGGTTCTGAGGTTTTTGATGGTCCTGATCCGTTTAAGAAACTTAGGAGCATTGTTCAAGCTGTTCAACATTACAATGATCCTCATGTGTTGGCTGAGATGAGTTCTGGATTGGAGAATGCAATGGAGAGCTTAAATGTTCGTGGTGACAGGATTCAAGACTTTGGCCAAGGCAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
ko00750 map00750
Pfam Domains
Protein Families
SOR_SNZ

Protein Analysis

314

Amino Acids

33.84

Weight (kDa)

5.45

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 31 - 232 8.9e-88 SOR/SNZ family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16050
fragaria_vesca FvH4_6g31450
malus_domestica MD09G1211600.v1.1 MD17G1193900.v1.1
prunus_persica Prupe.3G069500_v2.0.a1
pyrus_communis pycom09g12880
rosa_chinensis RchiOBHm_Chr2g0138251
rosa_laevigata RLG00000019729
rosa_multiflora Rmu_sc0004576.1_g000032 Rmu_sc0006570.1_g000010
rosa_roxburghii Rroxscaffold_2G00106380
rosa_rugosa Rorug02G0350300
rosa_samantha Rh2AG396800 Rh2BG409500 Rh2CG383300 Rh2DG418600
rosa_wichuraiana Rw2G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccII CGCG 3 cut(s) 74, 225, 309
AciI CCGC 9 cut(s) 5, 54, 129, 180, 225, 228, 350, 389, 519
AclI AACGTT 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 928
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 120, 288
AgsI TTSAA 5 cut(s) 143, 586, 821, 830, 920
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 2 cut(s) 208, 533
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 1 cut(s) 928
ApeKI GCWGC 3 cut(s) 488, 725, 739
AspLEI GCGC 2 cut(s) 134, 188
AspS9I GGNCC 1 cut(s) 785
AsuHPI GGTGA 2 cut(s) 581, 920
AvaII GGWCC 1 cut(s) 785
BalI TGGCCA 1 cut(s) 930
BamHI GGATCC 2 cut(s) 247, 501
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 307
BauI CACGAG 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 307
BbvI GCAGC 3 cut(s) 475, 737, 751
BccI CCATC 6 cut(s) 93, 289, 559, 661, 746, 776
BceAI ACGGC 1 cut(s) 432
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 208, 533
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 1 cut(s) 135
BglII AGATCT 1 cut(s) 333
BisI GCNGC 6 cut(s) 55, 130, 226, 489, 726, 740
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 6 cut(s) 56, 131, 227, 490, 727, 741
Bme18I GGWCC 1 cut(s) 785
BmgT120I GGNCC 1 cut(s) 785
BmiI GGNNCC 4 cut(s) 133, 249, 503, 678
BmsI GCATC 3 cut(s) 704, 712, 726
BplI GAGNNNNNCTC 2 cut(s) 365, 397
Bpu10I CCTNAGC 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 165
BsaBI GATNNNNATC 3 cut(s) 27, 396, 500
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 150, 505, 931
BsaWI WCCGGW 3 cut(s) 211, 250, 679
Bse118I RCCGGY 1 cut(s) 182
Bse3DI GCAATG 2 cut(s) 531, 891
Bse8I GATNNNNATC 3 cut(s) 27, 396, 500
BseDI CCNNGG 3 cut(s) 150, 505, 931
BseGI GGATG 3 cut(s) 85, 397, 601
BseJI GATNNNNATC 3 cut(s) 27, 396, 500
BseMI GCAATG 2 cut(s) 531, 891
BseMII CTCAG 6 cut(s) 128, 219, 344, 668, 762, 849
BseRI GAGGAG 1 cut(s) 484
BseXI GCAGC 3 cut(s) 475, 737, 751
Bsh1236I CGCG 3 cut(s) 74, 225, 309
BshFI GGCC 1 cut(s) 930
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 307
BsiSI CCGG 5 cut(s) 183, 212, 245, 251, 680
BsmAI GTCTC 2 cut(s) 208, 533
BsmBI CGTCTC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 886
BsnI GGCC 1 cut(s) 930
Bsp1286I GDGCHC 1 cut(s) 307
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 9 cut(s) 5, 54, 129, 180, 225, 228, 350, 389, 519
BspANI GGCC 1 cut(s) 930
BspCNI CTCAG 6 cut(s) 127, 218, 343, 667, 763, 850
BspFNI CGCG 3 cut(s) 74, 225, 309
BspLI GGNNCC 4 cut(s) 133, 249, 503, 678
BspT107I GGYRCC 1 cut(s) 131
BsrDI GCAATG 2 cut(s) 531, 891
BsrFI RCCGGY 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 150, 505, 931
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 300
BssT1I CCWWGG 2 cut(s) 505, 931
Bst2BI CACGAG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 544, 639
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 3 cut(s) 171, 184, 307
BstF5I GGATG 3 cut(s) 85, 397, 601
BstFNI CGCG 3 cut(s) 74, 225, 309
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 134, 188
BstMAI GTCTC 2 cut(s) 208, 533
BstMWI GCNNNNNNNGC 4 cut(s) 11, 170, 179, 725
BstNSI RCATGY 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 49
BstUI CGCG 3 cut(s) 74, 225, 309
BstV1I GCAGC 3 cut(s) 475, 737, 751
BstX2I RGATCY 4 cut(s) 208, 247, 333, 501
BstYI RGATCY 4 cut(s) 208, 247, 333, 501
BsuRI GGCC 1 cut(s) 930
BtsCI GGATG 3 cut(s) 85, 397, 601
BtsI GCAGTG 1 cut(s) 943
BtsIMutI CAGTG 1 cut(s) 943
Cac8I GCNNGC 3 cut(s) 171, 184, 307
CaiI CAGNNNCTG 1 cut(s) 542
CfoI GCGC 2 cut(s) 134, 188
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 785
CseI GACGC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 119, 287
CviAII CATG 3 cut(s) 189, 592, 848
CviQI GTAC 2 cut(s) 119, 287
DinI GGCGCC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 928
EciI GGCGGA 2 cut(s) 20, 169
Ecl136II GAGCTC 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 505, 931
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 785
Eco53kI GAGCTC 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 305
EcoT14I CCWWGG 2 cut(s) 505, 931
EcoT38I GRGCYC 1 cut(s) 307
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 505, 931
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 3 cut(s) 192, 595, 851
FaiI YATR 8 cut(s) 17, 190, 242, 417, 494, 593, 642, 849
FatI CATG 3 cut(s) 188, 591, 847
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 6 cut(s) 55, 130, 226, 489, 726, 740
FokI GGATG 3 cut(s) 72, 404, 608
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 6 cut(s) 55, 130, 226, 489, 726, 740
FspBI CTAG 1 cut(s) 743
GlaI GCGC 2 cut(s) 133, 187
GluI GCNGC 6 cut(s) 55, 130, 226, 489, 726, 740
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 930
HapII CCGG 5 cut(s) 183, 212, 245, 251, 680
HgaI GACGC 1 cut(s) 80
HhaI GCGC 2 cut(s) 134, 188
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 3 cut(s) 192, 595, 851
Hin6I GCGC 2 cut(s) 132, 186
HinP1I GCGC 2 cut(s) 132, 186
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 6 cut(s) 176, 341, 474, 579, 712, 916
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 5 cut(s) 183, 212, 245, 251, 680
HphI GGTGA 2 cut(s) 581, 920
Hpy166II GTNNAC 2 cut(s) 157, 612
Hpy188I TCNGA 7 cut(s) 107, 208, 333, 425, 479, 657, 772
Hpy188III TCNNGA 6 cut(s) 26, 583, 709, 788, 870, 920
Hpy8I GTNNAC 2 cut(s) 157, 612
Hpy99I CGWCG 2 cut(s) 74, 240
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 2 cut(s) 544, 639
HpyCH4IV ACGT 2 cut(s) 552, 614
HpyCH4V TGCA 5 cut(s) 536, 695, 725, 739, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 170, 179, 725
HpySE526I ACGT 2 cut(s) 552, 614
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 3 cut(s) 192, 595, 851
HspAI GCGC 2 cut(s) 132, 186
KasI GGCGCC 1 cut(s) 131
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 397
KspAI GTTAAC 1 cut(s) 157
LmnI GCTCC 2 cut(s) 35, 810
Lsp1109I GCAGC 3 cut(s) 475, 737, 751
LweI GCATC 3 cut(s) 704, 712, 726
MaeI CTAG 1 cut(s) 743
MaeII ACGT 2 cut(s) 552, 614
MaeIII GTNAC 3 cut(s) 40, 527, 908
MboII GAAGA 3 cut(s) 88, 559, 637
MflI RGATCY 4 cut(s) 208, 247, 333, 501
MhlI GDGCHC 1 cut(s) 307
MlsI TGGCCA 1 cut(s) 930
MluCI AATT 1 cut(s) 418
MluNI TGGCCA 1 cut(s) 930
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 2 cut(s) 588, 706
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 7 cut(s) 160, 259, 319, 462, 598, 766, 855
Mox20I TGGCCA 1 cut(s) 930
MreI CGCCGGCG 1 cut(s) 182
MroNI GCCGGC 1 cut(s) 182
MscI TGGCCA 1 cut(s) 930
MseI TTAA 5 cut(s) 99, 156, 515, 798, 896
MslI CAYNNNNRTG 1 cut(s) 837
Msp20I TGGCCA 1 cut(s) 930
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 5 cut(s) 183, 212, 245, 251, 680
Mva1269I GAATGC 1 cut(s) 886
MvnI CGCG 3 cut(s) 74, 225, 309
MwoI GCNNNNNNNGC 4 cut(s) 11, 170, 179, 725
NaeI GCCGGC 1 cut(s) 184
NarI GGCGCC 1 cut(s) 132
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 3 cut(s) 192, 595, 851
NlaIV GGNNCC 4 cut(s) 133, 249, 503, 678
NmuCI GTSAC 1 cut(s) 908
NspI RCATGY 1 cut(s) 192
PctI GAATGC 1 cut(s) 886
PdiI GCCGGC 1 cut(s) 184
PfeI GAWTC 4 cut(s) 176, 341, 474, 916
PkrI GCNGC 6 cut(s) 56, 131, 227, 490, 727, 741
PleI GAGTC 2 cut(s) 587, 706
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 2 cut(s) 587, 706
Psp124BI GAGCTC 1 cut(s) 307
Psp1406I AACGTT 1 cut(s) 552
PspN4I GGNNCC 4 cut(s) 133, 249, 503, 678
PspPI GGNCC 1 cut(s) 785
PstNI CAGNNNCTG 1 cut(s) 542
PsuI RGATCY 4 cut(s) 208, 247, 333, 501
RsaI GTAC 2 cut(s) 120, 288
RsaNI GTAC 2 cut(s) 119, 287
RseI CAYNNNNRTG 1 cut(s) 837
SacI GAGCTC 1 cut(s) 307
SaqAI TTAA 5 cut(s) 99, 156, 515, 798, 896
SatI GCNGC 6 cut(s) 55, 130, 226, 489, 726, 740
Sau96I GGNCC 1 cut(s) 785
SchI GAGTC 2 cut(s) 588, 706
SduI GDGCHC 1 cut(s) 307
SfaNI GCATC 3 cut(s) 704, 712, 726
SfcI CTRYAG 1 cut(s) 49
SfoI GGCGCC 1 cut(s) 133
SgrAI CRCCGGYG 1 cut(s) 182
SinI GGWCC 1 cut(s) 785
SmiMI CAYNNNNRTG 1 cut(s) 837
Sse9I AATT 1 cut(s) 418
SsiI CCGC 9 cut(s) 5, 54, 129, 180, 225, 228, 350, 389, 519
SspDI GGCGCC 1 cut(s) 131
SspMI CTAG 1 cut(s) 743
SstI GAGCTC 1 cut(s) 307
StyI CCWWGG 2 cut(s) 505, 931
TaaI ACNGT 2 cut(s) 544, 639
TaiI ACGT 2 cut(s) 555, 617
TaqI TCGA 1 cut(s) 217
TasI AATT 1 cut(s) 418
TauI GCSGC 3 cut(s) 57, 132, 228
TfiI GAWTC 4 cut(s) 176, 341, 474, 916
Tru1I TTAA 5 cut(s) 99, 156, 515, 798, 896
Tru9I TTAA 5 cut(s) 99, 156, 515, 798, 896
TscAI CASTG 1 cut(s) 943
TseFI GTSAC 1 cut(s) 908
TseI GCWGC 3 cut(s) 488, 725, 739
Tsp45I GTSAC 1 cut(s) 908
TspDTI ATGAA 2 cut(s) 394, 424
TspGWI ACGGA 4 cut(s) 35, 78, 420, 783
TspRI CASTG 1 cut(s) 943
VpaK11BI GGWCC 1 cut(s) 785
XceI RCATGY 1 cut(s) 192
XspI CTAG 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.