pycom09g12880

pyridoxal biosynthesis protein PDX1.2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0014311
Physical Location & Seq
Reverse (-)
11400431 .. 11401357
927 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g12880.1

Sequence Viewer

Length: 927 bp
ATGGCGGCAGAGGACGGCGCGGTCACAATCTACAACAGCAGCGCAATCACCGACGCCAAAAACAAGCAGAACCCATATTCGATGAAGGTCGGCCTTGCCCAGATGCTCCGCGGCGGCGCCATTGTCGAGGTTAACACCCTCGAGCAAGCCAAGCTCGCCGAAGAAGCCGGCGCTTGCTCCGTCATCGTCTCCGACCCGCCCCGCACCCGAGGCATTTCACGGATGTCCGACCCCTCTCTCATCAAGGACATCAAACGCGCCGTTTCGATCCCCGTTGTGGCCCGATCACGGATCGGGCATTTCGTCGAGGCCCAGATCCTCGAATCCATTGGGGTCGACTATATCGACGAGAGCGAGTATCTGGCCACGGCGGACGACGAGCATTTCATAAACAAGCACAATTTCGAGATCCCCTTCGTCTGCGGAGCTCAAACTCTCGGCGACGCGTTGCGGAGAGTGAGAGAAGGCGCTGCAGTCATCAGAATCCAAGGGGATCTATCCGGGTCCGGCAACGTCTCCATGACTGTAAAAAACGTGAGATGCGTAATGGGTCAGATTAGGCTGCTCAACAACATGGACGACGACGAAGTCTTCGCGTTTTCGAAGACAATCCAAGCGCCGTACGACCTGGTTGCGCAATCCAAGCAAATGGGTCGGCTGCCTGTGGTGCTATTCGCCGCCGGTGGCATCGTGACGCCGGCCGACGCAGCGCTGATGATGCAATTGGGTTGCGACGGAGTGTTTATCGGGTCGGATGTATTCAATTGTTCGGATCGATATAAGCGGGTGATCGGCATTGTTCAGGCGGTTAGGAACTACAATGATCCGCATGTGCTGGTGGAGGTGAGTTCCGGGTTGTCGGGCCTGATGGCGGGTTTGGGCGAGGACAGGAGCGAACCGTTTGGCGGCGGCCATGGAGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
ko00750 map00750
Pfam Domains
Protein Families
SOR_SNZ

Protein Analysis

309

Amino Acids

32.92

Weight (kDa)

5.21

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 27 - 227 6.4e-84 SOR/SNZ family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16050
fragaria_vesca FvH4_6g31450
malus_domestica MD09G1211600.v1.1 MD17G1193900.v1.1
prunus_persica Prupe.3G069500_v2.0.a1
pyrus_communis pycom09g12880
rosa_chinensis RchiOBHm_Chr2g0138251
rosa_laevigata RLG00000019729
rosa_multiflora Rmu_sc0004576.1_g000032 Rmu_sc0006570.1_g000010
rosa_roxburghii Rroxscaffold_2G00106380
rosa_rugosa Rorug02G0350300
rosa_samantha Rh2AG396800 Rh2BG409500 Rh2CG383300 Rh2DG418600
rosa_wichuraiana Rw2G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 20, 587
Acc16I TGCGCA 1 cut(s) 636
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 336
AccII CGCG 5 cut(s) 20, 111, 258, 446, 596
AclWI GGATC 7 cut(s) 262, 299, 310, 403, 501, 780, 818
AcoI YGGCCR 3 cut(s) 363, 699, 910
AcyI GRCGYC 3 cut(s) 54, 117, 695
AfaI GTAC 1 cut(s) 623
AfeI AGCGCT 1 cut(s) 711
AfiI CCNNNNNNNGG 4 cut(s) 277, 288, 871, 905
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 1 cut(s) 763
AjnI CCWGG 1 cut(s) 627
AluBI AGCT 2 cut(s) 154, 428
AluI AGCT 2 cut(s) 154, 428
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 2 cut(s) 193, 520
AlwI GGATC 7 cut(s) 262, 299, 310, 403, 501, 780, 818
Ama87I CYCGRG 2 cut(s) 140, 207
Aor51HI AGCGCT 1 cut(s) 711
AoxI GGCC 7 cut(s) 91, 279, 309, 363, 699, 862, 910
ApeKI GCWGC 5 cut(s) 39, 470, 562, 658, 707
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AspLEI GCGC 9 cut(s) 20, 44, 119, 173, 260, 470, 619, 637, 712
AspS9I GGNCC 4 cut(s) 280, 310, 504, 862
AsuC2I CCSGG 2 cut(s) 502, 853
AsuHPI GGTGA 3 cut(s) 40, 799, 856
AsuII TTCGAA 1 cut(s) 602
AvaI CYCGRG 2 cut(s) 140, 207
AvaII GGWCC 1 cut(s) 504
BalI TGGCCA 1 cut(s) 365
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 430
BbsI GAAGAC 2 cut(s) 583, 611
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 5 cut(s) 51, 457, 549, 645, 719
BccI CCATC 1 cut(s) 862
BceAI ACGGC 4 cut(s) 31, 245, 384, 604
BcgI CGANNNNNNTGC 4 cut(s) 614, 635, 648, 669
BciT130I CCWGG 1 cut(s) 629
BcnI CCSGG 2 cut(s) 502, 853
BcoDI GTCTC 2 cut(s) 193, 520
BfmI CTRYAG 1 cut(s) 471
BfoI RGCGCY 5 cut(s) 120, 174, 471, 620, 713
Bme1390I CCNGG 3 cut(s) 502, 629, 853
Bme18I GGWCC 1 cut(s) 504
BmeT110I CYCGRG 2 cut(s) 140, 207
BmgT120I GGNCC 4 cut(s) 280, 310, 504, 862
BmiI GGNNCC 2 cut(s) 118, 505
BmrFI CCNGG 3 cut(s) 502, 629, 853
BmsI GCATC 4 cut(s) 93, 530, 696, 708
BpiI GAAGAC 2 cut(s) 583, 611
Bpu14I TTCGAA 1 cut(s) 602
BpuMI CCSGG 2 cut(s) 502, 853
Bsa29I ATCGAT 1 cut(s) 775
BsaHI GRCGYC 3 cut(s) 54, 117, 695
BsaJI CCNNGG 5 cut(s) 109, 208, 366, 487, 913
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 288, 871, 905
Bse118I RCCGGY 3 cut(s) 167, 680, 697
BseBI CCWGG 1 cut(s) 629
BseCI ATCGAT 1 cut(s) 775
BseDI CCNNGG 5 cut(s) 109, 208, 366, 487, 913
BseGI GGATG 2 cut(s) 228, 760
BseLI CCNNNNNNNGG 4 cut(s) 277, 288, 871, 905
BseX3I CGGCCG 1 cut(s) 699
BseXI GCAGC 5 cut(s) 51, 457, 549, 645, 719
Bsh1236I CGCG 5 cut(s) 20, 111, 258, 446, 596
Bsh1285I CGRYCG 1 cut(s) 702
BshFI GGCC 7 cut(s) 93, 281, 311, 365, 701, 864, 912
BshNI GGYRCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 775
BsiEI CGRYCG 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 2 cut(s) 140, 207
BsiSI CCGG 6 cut(s) 168, 501, 507, 681, 698, 852
BsiWI CGTACG 1 cut(s) 621
BslI CCNNNNNNNGG 4 cut(s) 277, 288, 871, 905
BsmAI GTCTC 2 cut(s) 193, 520
BsmBI CGTCTC 2 cut(s) 193, 520
BsnI GGCC 7 cut(s) 93, 281, 311, 365, 701, 864, 912
BsoBI CYCGRG 2 cut(s) 140, 207
Bsp119I TTCGAA 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 789, 823
Bsp19I CCATGG 1 cut(s) 913
BspANI GGCC 7 cut(s) 93, 281, 311, 365, 701, 864, 912
BspDI ATCGAT 1 cut(s) 775
BspFNI CGCG 5 cut(s) 20, 111, 258, 446, 596
BspLI GGNNCC 2 cut(s) 118, 505
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 7 cut(s) 262, 299, 310, 403, 501, 780, 818
BspT104I TTCGAA 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 116
BsrFI RCCGGY 3 cut(s) 167, 680, 697
BssAI RCCGGY 3 cut(s) 167, 680, 697
BssECI CCNNGG 5 cut(s) 109, 208, 366, 487, 913
BssMI GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 789, 823
BssNI GRCGYC 3 cut(s) 54, 117, 695
BssT1I CCWWGG 2 cut(s) 487, 913
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 2 cut(s) 526, 900
BstACI GRCGYC 3 cut(s) 54, 117, 695
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 5 cut(s) 147, 156, 169, 175, 699
BstDSI CCRYGG 3 cut(s) 109, 366, 913
BstF5I GGATG 2 cut(s) 228, 760
BstFNI CGCG 5 cut(s) 20, 111, 258, 446, 596
BstH2I RGCGCY 5 cut(s) 120, 174, 471, 620, 713
BstHHI GCGC 9 cut(s) 20, 44, 119, 173, 260, 470, 619, 637, 712
BstKTI GATC 9 cut(s) 270, 287, 294, 318, 411, 496, 775, 792, 826
BstMAI GTCTC 2 cut(s) 193, 520
BstMBI GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 789, 823
BstMCI CGRYCG 1 cut(s) 702
BstMWI GCNNNNNNNGC 8 cut(s) 151, 155, 164, 210, 643, 667, 707, 718
BstNI CCWGG 1 cut(s) 629
BstNSI RCATGY 1 cut(s) 833
BstSCI CCNGG 3 cut(s) 500, 627, 851
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 5 cut(s) 20, 111, 258, 446, 596
BstV1I GCAGC 5 cut(s) 51, 457, 549, 645, 719
BstV2I GAAGAC 2 cut(s) 583, 611
BstX2I RGATCY 3 cut(s) 315, 408, 493
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 3 cut(s) 315, 408, 493
BstZI CGGCCG 1 cut(s) 699
Bsu15I ATCGAT 1 cut(s) 775
BsuRI GGCC 7 cut(s) 93, 281, 311, 365, 701, 864, 912
BsuTUI ATCGAT 1 cut(s) 775
BtgI CCRYGG 3 cut(s) 109, 366, 913
BtsCI GGATG 2 cut(s) 228, 760
Cac8I GCNNGC 5 cut(s) 147, 156, 169, 175, 699
CfoI GCGC 9 cut(s) 20, 44, 119, 173, 260, 470, 619, 637, 712
Cfr10I RCCGGY 3 cut(s) 167, 680, 697
Cfr13I GGNCC 4 cut(s) 280, 310, 504, 862
Cfr42I CCGCGG 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 775
CseI GACGC 4 cut(s) 62, 452, 703, 713
CsiI ACCWGGT 1 cut(s) 627
Csp6I GTAC 1 cut(s) 622
CviAII CATG 4 cut(s) 520, 574, 830, 914
CviQI GTAC 1 cut(s) 622
DinI GGCGCC 1 cut(s) 118
DpnI GATC 9 cut(s) 269, 286, 293, 317, 410, 495, 774, 791, 825
DpnII GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 789, 823
DrdI GACNNNNNNGTC 2 cut(s) 20, 587
DseDI GACNNNNNNGTC 2 cut(s) 20, 587
EaeI YGGCCR 3 cut(s) 363, 699, 910
EagI CGGCCG 1 cut(s) 699
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 428
EclXI CGGCCG 1 cut(s) 699
Eco130I CCWWGG 2 cut(s) 487, 913
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 504
Eco47III AGCGCT 1 cut(s) 711
Eco52I CGGCCG 1 cut(s) 699
Eco53kI GAGCTC 1 cut(s) 428
Eco88I CYCGRG 2 cut(s) 140, 207
EcoICRI GAGCTC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 627
EcoT14I CCWWGG 2 cut(s) 487, 913
EcoT38I GRGCYC 1 cut(s) 430
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
ErhI CCWWGG 2 cut(s) 487, 913
Esp3I CGTCTC 2 cut(s) 193, 520
FaeI CATG 4 cut(s) 523, 577, 833, 917
FaiI YATR 8 cut(s) 76, 342, 389, 521, 575, 780, 831, 915
FatI CATG 4 cut(s) 519, 573, 829, 913
FauI CCCGC 4 cut(s) 204, 209, 777, 865
FblI GTMKAC 1 cut(s) 336
FokI GGATG 2 cut(s) 235, 767
FriOI GRGCYC 1 cut(s) 430
FspI TGCGCA 1 cut(s) 636
GlaI GCGC 9 cut(s) 19, 43, 118, 172, 259, 469, 618, 636, 711
HaeII RGCGCY 5 cut(s) 120, 174, 471, 620, 713
HaeIII GGCC 7 cut(s) 93, 281, 311, 365, 701, 864, 912
HapII CCGG 6 cut(s) 168, 501, 507, 681, 698, 852
HgaI GACGC 4 cut(s) 62, 452, 703, 713
HhaI GCGC 9 cut(s) 20, 44, 119, 173, 260, 470, 619, 637, 712
Hin1I GRCGYC 3 cut(s) 54, 117, 695
Hin1II CATG 4 cut(s) 523, 577, 833, 917
Hin6I GCGC 9 cut(s) 18, 42, 117, 171, 258, 468, 617, 635, 710
HinP1I GCGC 9 cut(s) 18, 42, 117, 171, 258, 468, 617, 635, 710
HincII GTYRAC 2 cut(s) 133, 337
HindII GTYRAC 2 cut(s) 133, 337
HinfI GANTC 2 cut(s) 323, 483
HpaI GTTAAC 1 cut(s) 133
HpaII CCGG 6 cut(s) 168, 501, 507, 681, 698, 852
HphI GGTGA 3 cut(s) 40, 799, 856
Hpy166II GTNNAC 2 cut(s) 133, 337
Hpy188I TCNGA 6 cut(s) 193, 229, 482, 555, 754, 772
Hpy188III TCNNGA 2 cut(s) 406, 691
Hpy8I GTNNAC 2 cut(s) 133, 337
Hpy99I CGWCG 9 cut(s) 56, 308, 350, 380, 446, 584, 587, 707, 737
HpyAV CCTTC 3 cut(s) 79, 424, 458
HpyCH4III ACNGT 2 cut(s) 526, 900
HpyCH4IV ACGT 2 cut(s) 513, 534
HpyCH4V TGCA 2 cut(s) 473, 721
HpyF10VI GCNNNNNNNGC 8 cut(s) 151, 155, 164, 210, 643, 667, 707, 718
HpySE526I ACGT 2 cut(s) 513, 534
Hsp92I GRCGYC 3 cut(s) 54, 117, 695
Hsp92II CATG 4 cut(s) 523, 577, 833, 917
HspAI GCGC 9 cut(s) 18, 42, 117, 171, 258, 468, 617, 635, 710
KasI GGCGCC 1 cut(s) 116
KroI GCCGGC 2 cut(s) 167, 697
KroNI GCCGGC 2 cut(s) 169, 699
KspAI GTTAAC 1 cut(s) 133
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 789, 823
LmnI GCTCC 4 cut(s) 111, 182, 425, 891
Lsp1109I GCAGC 5 cut(s) 51, 457, 549, 645, 719
LweI GCATC 4 cut(s) 93, 530, 696, 708
MabI ACCWGGT 1 cut(s) 627
MaeII ACGT 2 cut(s) 513, 534
MaeIII GTNAC 2 cut(s) 22, 691
MalI GATC 9 cut(s) 269, 286, 293, 317, 410, 495, 774, 791, 825
MboI GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 789, 823
MboII GAAGA 3 cut(s) 173, 583, 616
MfeI CAATTG 2 cut(s) 722, 763
MflI RGATCY 3 cut(s) 315, 408, 493
MhlI GDGCHC 1 cut(s) 430
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 3 cut(s) 400, 722, 763
MluI ACGCGT 1 cut(s) 444
MluNI TGGCCA 1 cut(s) 365
Mly113I GGCGCC 1 cut(s) 117
MmeI TCCRAC 3 cut(s) 216, 252, 732
Mox20I TGGCCA 1 cut(s) 365
MroNI GCCGGC 2 cut(s) 167, 697
MscI TGGCCA 1 cut(s) 365
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 918
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 6 cut(s) 168, 501, 507, 681, 698, 852
MspR9I CCNGG 3 cut(s) 502, 629, 853
MunI CAATTG 2 cut(s) 722, 763
MvaI CCWGG 1 cut(s) 629
MvnI CGCG 5 cut(s) 20, 111, 258, 446, 596
MwoI GCNNNNNNNGC 8 cut(s) 151, 155, 164, 210, 643, 667, 707, 718
NaeI GCCGGC 2 cut(s) 169, 699
NarI GGCGCC 1 cut(s) 117
NciI CCSGG 2 cut(s) 502, 853
NcoI CCATGG 1 cut(s) 913
NdeII GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 789, 823
NgoMIV GCCGGC 2 cut(s) 167, 697
NlaIII CATG 4 cut(s) 523, 577, 833, 917
NlaIV GGNNCC 2 cut(s) 118, 505
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 22, 691
NsbI TGCGCA 1 cut(s) 636
NspI RCATGY 1 cut(s) 833
NspV TTCGAA 1 cut(s) 602
PaeR7I CTCGAG 1 cut(s) 140
PcsI WCGNNNNNNNCGW 4 cut(s) 300, 342, 351, 540
PdiI GCCGGC 2 cut(s) 169, 699
PfeI GAWTC 2 cut(s) 323, 483
Pfl23II CGTACG 1 cut(s) 621
PflFI GACNNNGTC 1 cut(s) 587
PluTI GGCGCC 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 627
PspGI CCWGG 1 cut(s) 627
PspLI CGTACG 1 cut(s) 621
PspN4I GGNNCC 2 cut(s) 118, 505
PspPI GGNCC 4 cut(s) 280, 310, 504, 862
PspXI VCTCGAGB 1 cut(s) 140
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 3 cut(s) 315, 408, 493
PsyI GACNNNGTC 1 cut(s) 587
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 918
SacI GAGCTC 1 cut(s) 430
SacII CCGCGG 1 cut(s) 112
SalI GTCGAC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 789, 823
Sau96I GGNCC 4 cut(s) 280, 310, 504, 862
ScrFI CCNGG 3 cut(s) 502, 629, 853
SduI GDGCHC 1 cut(s) 430
SetI ASST 9 cut(s) 90, 132, 156, 430, 516, 537, 630, 846, 922
SexAI ACCWGGT 1 cut(s) 627
SfaNI GCATC 4 cut(s) 93, 530, 696, 708
SfcI CTRYAG 1 cut(s) 471
SfoI GGCGCC 1 cut(s) 118
Sfr274I CTCGAG 1 cut(s) 140
Sfr303I CCGCGG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 602
SgrAI CRCCGGYG 1 cut(s) 680
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 1 cut(s) 504
SlaI CTCGAG 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 3 cut(s) 400, 722, 763
SspDI GGCGCC 1 cut(s) 116
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 3 cut(s) 500, 627, 851
StyI CCWWGG 2 cut(s) 487, 913
TaaI ACNGT 2 cut(s) 526, 900
TaiI ACGT 2 cut(s) 516, 537
TasI AATT 3 cut(s) 400, 722, 763
TauI GCSGC 6 cut(s) 8, 114, 117, 680, 909, 912
TfiI GAWTC 2 cut(s) 323, 483
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseFI GTSAC 2 cut(s) 22, 691
TseI GCWGC 5 cut(s) 39, 470, 562, 658, 707
Tsp45I GTSAC 2 cut(s) 22, 691
TspDTI ATGAA 2 cut(s) 98, 376
TspGWI ACGGA 4 cut(s) 169, 235, 304, 750
Tth111I GACNNNGTC 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 504
XceI RCATGY 1 cut(s) 833
XhoI CTCGAG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.