Prupe.3G069500_v2.0.a1

pyridoxal biosynthesis protein PDX1.2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014311
Physical Location & Seq
Forward (+)
5018520 .. 5019944
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G069500.1

Sequence Viewer

Length: 927 bp
ATGGCGGCAGAGGACGGCGCGGTCACAATCTACAGCGGCAGCGCAATCACCGACGCCAAGAAGAACCCATATTCTCTCAAGGTCGGCCTAGGCCAGATGCTCCGAGGCGGCGCCATTTTTGAGGTCACCACCGCCGACCAAGCCAAGCTCGCCGAGGACGCCGGCGCTTGCTCCATCATCGTCTCTGATCCACCCCGCGCCCAAGGCATTTCGCGCATGTCTGACCCAGCTCTCGTCAAGGACATCAAACGCGCAGTGTCGCTCCCCGTCATGGCGCGATCCCGGGTCGGCCATTTCGTCGAGGCCCAGGTCCTCGAAGCCATCGGCGTCGATTACATCGACGAGAGCGAGTATCTGGCGATAGCAGACGAGGACCATTTCATAAACAAGCACAATTTCCAGACCCCTTTCGTCTGCGGAGCCCAAACCCTCGGGGACGCGTTGAGGAGAGTGAGAGAAGGCGCGGCGATCGTAAGAACCCAAGGGGATCTATCTGGGTCTGGAAATGTAGCCATGGCTGTAAAAAACGTGAGATCTGTAATGGGTCAGATAAGGCTGCTCAACAACATGGACGACGACGAAGTCTTCGCGTTTTCGAAGGAAATTCAAGCGCCGTACGACCTCGTTGCGCAGACCAAGCAAATGGGTCGGCTTCCGGTAGTGCAATTCGCCTCCGGCGGCATTGTGACGCCGGCCGACGCGGCGTTGATGATGCAATTGGGGTGCGACGGAGTTTTTGTCGGGTCGAATGTTTTCAACTGTTCGGATCCATACAAGCGGGTGAGGGGCATTGTTGAGGCGGTTAGGAACTACAATGATCCGCATGTGCTGGTGGAGACGAGTTCTGGGTTGTCGGGTCTGATGGCGGGTTTGGATCTCGGTGAGGACAGGATCGAACACTTTGGTCGCGGGCATGGAGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
ko00750 map00750
Pfam Domains
Protein Families
SOR_SNZ

Protein Analysis

309

Amino Acids

32.83

Weight (kDa)

5.19

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16050
fragaria_vesca FvH4_6g31450
malus_domestica MD09G1211600.v1.1 MD17G1193900.v1.1
prunus_persica Prupe.3G069500_v2.0.a1
pyrus_communis pycom09g12880
rosa_chinensis RchiOBHm_Chr2g0138251
rosa_laevigata RLG00000019729
rosa_multiflora Rmu_sc0004576.1_g000032 Rmu_sc0006570.1_g000010
rosa_roxburghii Rroxscaffold_2G00106380
rosa_rugosa Rorug02G0350300
rosa_samantha Rh2AG396800 Rh2BG409500 Rh2CG383300 Rh2DG418600
rosa_wichuraiana Rw2G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 20, 581
Acc16I TGCGCA 1 cut(s) 630
AccB1I GGYRCC 1 cut(s) 110
AclWI GGATC 8 cut(s) 182, 273, 495, 761, 774, 812, 882, 899
AcoI YGGCCR 2 cut(s) 289, 693
AcsI RAATTY 1 cut(s) 603
AcyI GRCGYC 5 cut(s) 54, 111, 159, 327, 689
AfaI GTAC 1 cut(s) 617
AfiI CCNNNNNNNGG 1 cut(s) 271
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 2 cut(s) 608, 757
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 2 cut(s) 148, 230
AluI AGCT 2 cut(s) 148, 230
Alw26I GTCTC 2 cut(s) 187, 830
AlwI GGATC 8 cut(s) 182, 273, 495, 761, 774, 812, 882, 899
Ama87I CYCGRG 2 cut(s) 282, 431
AoxI GGCC 5 cut(s) 85, 91, 289, 303, 693
ApeKI GCWGC 2 cut(s) 39, 556
ApoI RAATTY 1 cut(s) 603
ArsI GACNNNNNNTTYG 4 cut(s) 569, 601, 719, 751
Asp700I GAANNNNTTC 1 cut(s) 752
AspA2I CCTAGG 1 cut(s) 88
AspS9I GGNCC 3 cut(s) 304, 310, 373
AsuC2I CCSGG 2 cut(s) 283, 284
AsuHPI GGTGA 4 cut(s) 40, 118, 793, 893
AsuII TTCGAA 1 cut(s) 596
AvaI CYCGRG 2 cut(s) 282, 431
AvaII GGWCC 2 cut(s) 310, 373
AvrII CCTAGG 1 cut(s) 88
BamHI GGATCC 1 cut(s) 766
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 577
BbvI GCAGC 2 cut(s) 51, 543
BccI CCATC 3 cut(s) 182, 329, 856
BceAI ACGGC 2 cut(s) 31, 598
BcgI CGANNNNNNTGC 4 cut(s) 608, 629, 642, 663
BciT130I CCWGG 1 cut(s) 308
BcnI CCSGG 2 cut(s) 283, 284
BcoDI GTCTC 2 cut(s) 187, 830
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 31
BfoI RGCGCY 3 cut(s) 114, 168, 614
BglI GCCNNNNNGGC 1 cut(s) 701
BglII AGATCT 1 cut(s) 533
BisI GCNGC 8 cut(s) 6, 37, 40, 109, 465, 557, 679, 702
BlnI CCTAGG 1 cut(s) 88
BlsI GCNGC 8 cut(s) 7, 38, 41, 110, 466, 558, 680, 703
Bme1390I CCNGG 3 cut(s) 283, 284, 308
Bme18I GGWCC 2 cut(s) 310, 373
BmeT110I CYCGRG 2 cut(s) 282, 431
BmgT120I GGNCC 3 cut(s) 304, 310, 373
BmiI GGNNCC 3 cut(s) 112, 421, 768
BmrFI CCNGG 3 cut(s) 283, 284, 308
BmsI GCATC 2 cut(s) 87, 702
BpiI GAAGAC 1 cut(s) 577
Bpu14I TTCGAA 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 2 cut(s) 283, 284
BsaHI GRCGYC 5 cut(s) 54, 111, 159, 327, 689
BsaJI CCNNGG 9 cut(s) 88, 103, 153, 202, 282, 306, 430, 481, 513
BsaWI WCCGGW 1 cut(s) 655
BsaXI ACNNNNNCTCC 2 cut(s) 723, 753
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse118I RCCGGY 2 cut(s) 161, 691
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 9 cut(s) 88, 103, 153, 202, 282, 306, 430, 481, 513
BseLI CCNNNNNNNGG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 460
BseX3I CGGCCG 1 cut(s) 693
BseXI GCAGC 2 cut(s) 51, 543
BseYI CCCAGC 1 cut(s) 226
Bsh1285I CGRYCG 2 cut(s) 471, 696
BshFI GGCC 5 cut(s) 87, 93, 291, 305, 695
BshNI GGYRCC 1 cut(s) 110
BsiEI CGRYCG 2 cut(s) 471, 696
BsiHKCI CYCGRG 2 cut(s) 282, 431
BsiSI CCGG 5 cut(s) 162, 283, 656, 675, 692
BsiWI CGTACG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 2 cut(s) 187, 830
BsmBI CGTCTC 2 cut(s) 187, 830
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 5 cut(s) 87, 93, 291, 305, 695
BsoBI CYCGRG 2 cut(s) 282, 431
Bsp119I TTCGAA 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 9 cut(s) 187, 278, 468, 487, 533, 766, 817, 874, 891
Bsp19I CCATGG 1 cut(s) 513
BspANI GGCC 5 cut(s) 87, 93, 291, 305, 695
BspLI GGNNCC 3 cut(s) 112, 421, 768
BspPI GGATC 8 cut(s) 182, 273, 495, 761, 774, 812, 882, 899
BspT104I TTCGAA 1 cut(s) 596
BspT107I GGYRCC 1 cut(s) 110
BsrFI RCCGGY 2 cut(s) 161, 691
BssAI RCCGGY 2 cut(s) 161, 691
BssECI CCNNGG 9 cut(s) 88, 103, 153, 202, 282, 306, 430, 481, 513
BssMI GATC 9 cut(s) 187, 278, 468, 487, 533, 766, 817, 874, 891
BssNI GRCGYC 5 cut(s) 54, 111, 159, 327, 689
BssT1I CCWWGG 4 cut(s) 88, 202, 481, 513
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 761
BstACI GRCGYC 5 cut(s) 54, 111, 159, 327, 689
BstBI TTCGAA 1 cut(s) 596
BstC8I GCNNGC 5 cut(s) 150, 163, 169, 693, 911
BstDSI CCRYGG 1 cut(s) 513
BstEII GGTNACC 1 cut(s) 124
BstH2I RGCGCY 3 cut(s) 114, 168, 614
BstKTI GATC 9 cut(s) 190, 281, 471, 490, 536, 769, 820, 877, 894
BstMAI GTCTC 2 cut(s) 187, 830
BstMBI GATC 9 cut(s) 187, 278, 468, 487, 533, 766, 817, 874, 891
BstMCI CGRYCG 2 cut(s) 471, 696
BstMWI GCNNNNNNNGC 7 cut(s) 140, 149, 158, 204, 213, 637, 701
BstNI CCWGG 1 cut(s) 308
BstNSI RCATGY 2 cut(s) 220, 827
BstPI GGTNACC 1 cut(s) 124
BstSCI CCNGG 3 cut(s) 281, 282, 306
BstSFI CTRYAG 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 51, 543
BstV2I GAAGAC 1 cut(s) 577
BstX2I RGATCY 4 cut(s) 487, 533, 766, 874
BstXI CCANNNNNNTGG 1 cut(s) 643
BstYI RGATCY 4 cut(s) 487, 533, 766, 874
BstZI CGGCCG 1 cut(s) 693
BsuRI GGCC 5 cut(s) 87, 93, 291, 305, 695
BtgI CCRYGG 1 cut(s) 513
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 5 cut(s) 150, 163, 169, 693, 911
Cfr10I RCCGGY 2 cut(s) 161, 691
Cfr13I GGNCC 3 cut(s) 304, 310, 373
Cfr9I CCCGGG 1 cut(s) 282
CseI GACGC 6 cut(s) 62, 167, 316, 446, 697, 707
Csp6I GTAC 1 cut(s) 616
CviAII CATG 6 cut(s) 217, 271, 514, 568, 824, 914
CviQI GTAC 1 cut(s) 616
DinI GGCGCC 1 cut(s) 112
DpnI GATC 9 cut(s) 189, 280, 470, 489, 535, 768, 819, 876, 893
DpnII GATC 9 cut(s) 187, 278, 468, 487, 533, 766, 817, 874, 891
DrdI GACNNNNNNGTC 2 cut(s) 20, 581
DseDI GACNNNNNNGTC 2 cut(s) 20, 581
EaeI YGGCCR 2 cut(s) 289, 693
EagI CGGCCG 1 cut(s) 693
EclXI CGGCCG 1 cut(s) 693
Eco130I CCWWGG 4 cut(s) 88, 202, 481, 513
Eco24I GRGCYC 1 cut(s) 424
Eco47I GGWCC 2 cut(s) 310, 373
Eco52I CGGCCG 1 cut(s) 693
Eco88I CYCGRG 2 cut(s) 282, 431
Eco91I GGTNACC 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 310
EcoO65I GGTNACC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 4 cut(s) 88, 202, 481, 513
EcoT38I GRGCYC 1 cut(s) 424
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
ErhI CCWWGG 4 cut(s) 88, 202, 481, 513
Esp3I CGTCTC 2 cut(s) 187, 830
FaeI CATG 6 cut(s) 220, 274, 517, 571, 827, 917
FaiI YATR 9 cut(s) 70, 218, 272, 383, 515, 569, 772, 825, 915
FaqI GGGAC 1 cut(s) 449
FatI CATG 6 cut(s) 216, 270, 513, 567, 823, 913
FauI CCCGC 4 cut(s) 203, 771, 859, 902
Fnu4HI GCNGC 8 cut(s) 6, 37, 40, 109, 465, 557, 679, 702
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 8 cut(s) 6, 37, 40, 109, 465, 557, 679, 702
FspBI CTAG 1 cut(s) 89
FspI TGCGCA 1 cut(s) 630
GluI GCNGC 8 cut(s) 6, 37, 40, 109, 465, 557, 679, 702
GsaI CCCAGC 1 cut(s) 230
HaeII RGCGCY 3 cut(s) 114, 168, 614
HaeIII GGCC 5 cut(s) 87, 93, 291, 305, 695
HapII CCGG 5 cut(s) 162, 283, 656, 675, 692
HgaI GACGC 6 cut(s) 62, 167, 316, 446, 697, 707
Hin1I GRCGYC 5 cut(s) 54, 111, 159, 327, 689
Hin1II CATG 6 cut(s) 220, 274, 517, 571, 827, 917
HpaII CCGG 5 cut(s) 162, 283, 656, 675, 692
HphI GGTGA 4 cut(s) 40, 118, 793, 893
Hpy188I TCNGA 6 cut(s) 104, 187, 223, 549, 766, 861
Hpy188III TCNNGA 2 cut(s) 400, 501
Hpy99I CGWCG 8 cut(s) 56, 302, 332, 344, 578, 581, 701, 731
HpyAV CCTTC 2 cut(s) 452, 592
HpyCH4III ACNGT 1 cut(s) 761
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 2 cut(s) 664, 715
HpyF10VI GCNNNNNNNGC 7 cut(s) 140, 149, 158, 204, 213, 637, 701
HpySE526I ACGT 1 cut(s) 528
Hsp92I GRCGYC 5 cut(s) 54, 111, 159, 327, 689
Hsp92II CATG 6 cut(s) 220, 274, 517, 571, 827, 917
KasI GGCGCC 1 cut(s) 110
KroI GCCGGC 2 cut(s) 161, 691
KroNI GCCGGC 2 cut(s) 163, 693
Kzo9I GATC 9 cut(s) 187, 278, 468, 487, 533, 766, 817, 874, 891
LmnI GCTCC 4 cut(s) 105, 176, 267, 419
Lsp1109I GCAGC 2 cut(s) 51, 543
LweI GCATC 2 cut(s) 87, 702
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 22, 124, 685
MalI GATC 9 cut(s) 189, 280, 470, 489, 535, 768, 819, 876, 893
MboI GATC 9 cut(s) 187, 278, 468, 487, 533, 766, 817, 874, 891
MboII GAAGA 2 cut(s) 73, 577
MfeI CAATTG 1 cut(s) 716
MflI RGATCY 4 cut(s) 487, 533, 766, 874
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 4 cut(s) 394, 603, 665, 716
MluI ACGCGT 1 cut(s) 438
Mly113I GGCGCC 1 cut(s) 111
MreI CGCCGGCG 1 cut(s) 161
MroNI GCCGGC 2 cut(s) 161, 691
MroXI GAANNNNTTC 1 cut(s) 752
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 5 cut(s) 162, 283, 656, 675, 692
MspR9I CCNGG 3 cut(s) 283, 284, 308
MunI CAATTG 1 cut(s) 716
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 7 cut(s) 140, 149, 158, 204, 213, 637, 701
NaeI GCCGGC 2 cut(s) 163, 693
NarI GGCGCC 1 cut(s) 111
NciI CCSGG 2 cut(s) 283, 284
NcoI CCATGG 1 cut(s) 513
NdeII GATC 9 cut(s) 187, 278, 468, 487, 533, 766, 817, 874, 891
NgoMIV GCCGGC 2 cut(s) 161, 691
NlaIII CATG 6 cut(s) 220, 274, 517, 571, 827, 917
NlaIV GGNNCC 3 cut(s) 112, 421, 768
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 3 cut(s) 22, 124, 685
NsbI TGCGCA 1 cut(s) 630
NspI RCATGY 2 cut(s) 220, 827
NspV TTCGAA 1 cut(s) 596
PcsI WCGNNNNNNNCGW 3 cut(s) 294, 336, 345
PdiI GCCGGC 2 cut(s) 163, 693
PdmI GAANNNNTTC 1 cut(s) 752
Pfl23II CGTACG 1 cut(s) 615
PflFI GACNNNGTC 1 cut(s) 581
PkrI GCNGC 8 cut(s) 7, 38, 41, 110, 466, 558, 680, 703
Ple19I CGATCG 1 cut(s) 471
PluTI GGCGCC 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 306
PspEI GGTNACC 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 1 cut(s) 306
PspLI CGTACG 1 cut(s) 615
PspN4I GGNNCC 3 cut(s) 112, 421, 768
PspPI GGNCC 3 cut(s) 304, 310, 373
PspPPI RGGWCCY 1 cut(s) 310
PsuI RGATCY 4 cut(s) 487, 533, 766, 874
PsyI GACNNNGTC 1 cut(s) 581
PvuI CGATCG 1 cut(s) 471
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 1 cut(s) 918
SatI GCNGC 8 cut(s) 6, 37, 40, 109, 465, 557, 679, 702
Sau3AI GATC 9 cut(s) 187, 278, 468, 487, 533, 766, 817, 874, 891
Sau96I GGNCC 3 cut(s) 304, 310, 373
ScrFI CCNGG 3 cut(s) 283, 284, 308
SduI GDGCHC 1 cut(s) 424
SetI ASST 8 cut(s) 84, 126, 150, 232, 312, 531, 624, 922
SfaNI GCATC 2 cut(s) 87, 702
SfcI CTRYAG 1 cut(s) 31
SfoI GGCGCC 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 596
SgrAI CRCCGGYG 1 cut(s) 161
SinI GGWCC 2 cut(s) 310, 373
SmaI CCCGGG 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 4 cut(s) 394, 603, 665, 716
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 3 cut(s) 281, 282, 306
StyI CCWWGG 4 cut(s) 88, 202, 481, 513
TaaI ACNGT 1 cut(s) 761
TaiI ACGT 1 cut(s) 531
TaqI TCGA 7 cut(s) 300, 315, 330, 339, 596, 746, 894
TasI AATT 4 cut(s) 394, 603, 665, 716
TauI GCSGC 6 cut(s) 8, 39, 111, 467, 681, 704
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 3 cut(s) 22, 124, 685
TseI GCWGC 2 cut(s) 39, 556
Tsp45I GTSAC 3 cut(s) 22, 124, 685
TspDTI ATGAA 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 744
TspMI CCCGGG 1 cut(s) 282
TspRI CASTG 1 cut(s) 261
Tth111I GACNNNGTC 1 cut(s) 581
VpaK11BI GGWCC 2 cut(s) 310, 373
XapI RAATTY 1 cut(s) 603
XceI RCATGY 2 cut(s) 220, 827
XmaI CCCGGG 1 cut(s) 282
XmaJI CCTAGG 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.