FvH4_6g31450

Belongs to the PdxS SNZ family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014311
Physical Location & Seq
Reverse (-)
24572206 .. 24573135
930 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31450.t1

Sequence Viewer

Length: 930 bp
ATGGCGTCTCAGGACGGTGCAGTCACCATCTACACCAGCGGCGCAGTCGCCGACGCCTCGAAGAAAAAGAATCCCTACAGCCTCAAGGTCGGCCTCGCCCAGATGCTCCGCGGCGGCGCCATCGTCGAAGTCACCAACCCCGATCAAGCCAAGCTCGCCGAGGACGCCGGCGCCTGCTCCGTCATCGTCTCCTCCCCCCGCGGCGCCGCCGCCGGCATTCTCCGCATGCCCGATCCCTCCCTCGTCAAGGCCATCAAACGCGCCGTCTCCATCCCCGTCATGGCCAGATCCCGCGTCGGCCATTTCGTCGAGGCCCAGATCCTCGAAGCCATCGGTGTTGACTATGTCGACGAGAGCGAGTACCTGGCCGTCGCCGACGAGGATCATTACGTCAACAAGCATAATTTCCGGTGCCCTTTCGTCTGCGGCGCCGAGACTCTCGGCGACGCGCTGAGGCGGATCAGAGAAGGGGCCGCGCTTATTCGGACCCAGGGAGATTTATCCGGGTCGGGCAATGTGGCCCGGACCGTCCGGAATGTCCGGGCGATCATGAGTCAGATAAGAATGCTGAACAATATGGACGATGATGAAGTCTTCGCGTTTTCCAAGAGCATTGCTGCGCCATACGATCTGGTGGCGCAGACGAAGCAAATGGGGAGGCTGCCGGTGGTCCAATTCGCCTCCGGGGGGATTGTGACACCGGCTGACGTGGGGCTGGTTATGCAATTGGGATGTGATGGAGTGTTTATCGGGTCGGATGTTTTCGGGGTAGCGGATCCGTATAAGCGTGTGAGAGGCATTGTTGATGCTGTGAGGAATTATAATGACCCGGATGTGCTGGTGGAGACGAGCTCCGGGTTGGCGGGTCTGATGGCGGGTATGAGCCTCGGTGAGGACAGAATCGAAGAGTTTGGGCGTGGAGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
ko00750 map00750
Pfam Domains
Protein Families
SOR_SNZ

Protein Analysis

310

Amino Acids

32.71

Weight (kDa)

5.36

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 27 - 227 4.9e-85 SOR/SNZ family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16050
fragaria_vesca FvH4_6g31450
malus_domestica MD09G1211600.v1.1 MD17G1193900.v1.1
prunus_persica Prupe.3G069500_v2.0.a1
pyrus_communis pycom09g12880
rosa_chinensis RchiOBHm_Chr2g0138251
rosa_laevigata RLG00000019729
rosa_multiflora Rmu_sc0004576.1_g000032 Rmu_sc0006570.1_g000010
rosa_roxburghii Rroxscaffold_2G00106380
rosa_rugosa Rorug02G0350300
rosa_samantha Rh2AG396800 Rh2BG409500 Rh2CG383300 Rh2DG418600
rosa_wichuraiana Rw2G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AasI GACNNNNNNGTC 1 cut(s) 20
AccB1I GGYRCC 5 cut(s) 116, 170, 203, 411, 428
AccI GTMKAC 1 cut(s) 348
AccII CGCG 7 cut(s) 111, 201, 261, 294, 449, 476, 599
AccIII TCCGGA 1 cut(s) 531
AclWI GGATC 7 cut(s) 227, 282, 313, 390, 467, 770, 783
AcoI YGGCCR 3 cut(s) 282, 298, 366
AcyI GRCGYC 7 cut(s) 5, 54, 117, 165, 171, 204, 429
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 4 cut(s) 247, 280, 687, 892
AjiI CACGTC 1 cut(s) 709
AjnI CCWGG 2 cut(s) 363, 489
AluBI AGCT 2 cut(s) 154, 852
AluI AGCT 2 cut(s) 154, 852
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 5 cut(s) 12, 193, 271, 428, 839
AlwI GGATC 7 cut(s) 227, 282, 313, 390, 467, 770, 783
Aor13HI TCCGGA 1 cut(s) 531
AoxI GGCC 8 cut(s) 91, 249, 282, 298, 312, 366, 471, 519
ApeKI GCWGC 2 cut(s) 617, 661
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
AspS9I GGNCC 6 cut(s) 313, 471, 486, 520, 525, 670
AsuC2I CCSGG 6 cut(s) 505, 523, 542, 685, 830, 856
AsuHPI GGTGA 3 cut(s) 16, 124, 902
AvaII GGWCC 3 cut(s) 486, 525, 670
BaeGI GKGCMC 1 cut(s) 416
BalI TGGCCA 1 cut(s) 284
BamHI GGATCC 1 cut(s) 775
BanI GGYRCC 5 cut(s) 116, 170, 203, 411, 428
BanII GRGCYC 1 cut(s) 854
BbsI GAAGAC 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 854
BbvCI CCTCAGC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 604, 648
BccI CCATC 7 cut(s) 35, 128, 260, 278, 338, 731, 865
BceAI ACGGC 2 cut(s) 248, 353
BciT130I CCWGG 2 cut(s) 365, 491
BcnI CCSGG 6 cut(s) 505, 523, 542, 685, 830, 856
BcoDI GTCTC 5 cut(s) 12, 193, 271, 428, 839
BfmI CTRYAG 1 cut(s) 76
BfoI RGCGCY 4 cut(s) 120, 174, 207, 432
Bme1390I CCNGG 8 cut(s) 365, 491, 505, 523, 542, 685, 830, 856
Bme18I GGWCC 3 cut(s) 486, 525, 670
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 6 cut(s) 313, 471, 486, 520, 525, 670
BmiI GGNNCC 8 cut(s) 118, 172, 205, 413, 430, 472, 488, 777
BmrFI CCNGG 8 cut(s) 365, 491, 505, 523, 542, 685, 830, 856
BmsI GCATC 2 cut(s) 93, 796
BpiI GAAGAC 1 cut(s) 586
BplI GAGNNNNNCTC 2 cut(s) 836, 868
Bpu10I CCTNAGC 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 6 cut(s) 505, 523, 542, 685, 830, 856
BsaHI GRCGYC 7 cut(s) 5, 54, 117, 165, 171, 204, 429
BsaJI CCNNGG 7 cut(s) 109, 159, 199, 489, 490, 684, 886
BsaWI WCCGGW 2 cut(s) 408, 531
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 280, 687, 892
Bse118I RCCGGY 4 cut(s) 167, 212, 664, 700
Bse3DI GCAATG 2 cut(s) 520, 612
BseAI TCCGGA 1 cut(s) 531
BseBI CCWGG 2 cut(s) 365, 491
BseDI CCNNGG 7 cut(s) 109, 159, 199, 489, 490, 684, 886
BseGI GGATG 4 cut(s) 270, 737, 763, 838
BseLI CCNNNNNNNGG 4 cut(s) 247, 280, 687, 892
BseMI GCAATG 2 cut(s) 520, 612
BseMII CTCAG 2 cut(s) 23, 443
BseRI GAGGAG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 2 cut(s) 604, 648
BsgI GTGCAG 1 cut(s) 39
Bsh1236I CGCG 7 cut(s) 111, 201, 261, 294, 449, 476, 599
BshFI GGCC 8 cut(s) 93, 251, 284, 300, 314, 368, 473, 521
BshNI GGYRCC 5 cut(s) 116, 170, 203, 411, 428
BsiHKAI GWGCWC 1 cut(s) 854
BslI CCNNNNNNNGG 4 cut(s) 247, 280, 687, 892
BsmAI GTCTC 5 cut(s) 12, 193, 271, 428, 839
BsmBI CGTCTC 4 cut(s) 12, 193, 271, 839
BsmI GAATGC 2 cut(s) 216, 570
BsnI GGCC 8 cut(s) 93, 251, 284, 300, 314, 368, 473, 521
Bsp1286I GDGCHC 2 cut(s) 416, 854
Bsp13I TCCGGA 1 cut(s) 531
Bsp143I GATC 9 cut(s) 142, 232, 287, 318, 382, 459, 546, 628, 775
BspANI GGCC 8 cut(s) 93, 251, 284, 300, 314, 368, 473, 521
BspCNI CTCAG 2 cut(s) 22, 444
BspEI TCCGGA 1 cut(s) 531
BspFNI CGCG 7 cut(s) 111, 201, 261, 294, 449, 476, 599
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 8 cut(s) 118, 172, 205, 413, 430, 472, 488, 777
BspPI GGATC 7 cut(s) 227, 282, 313, 390, 467, 770, 783
BspT107I GGYRCC 5 cut(s) 116, 170, 203, 411, 428
BsrDI GCAATG 2 cut(s) 520, 612
BsrFI RCCGGY 4 cut(s) 167, 212, 664, 700
BssAI RCCGGY 4 cut(s) 167, 212, 664, 700
BssECI CCNNGG 7 cut(s) 109, 159, 199, 489, 490, 684, 886
BssMI GATC 9 cut(s) 142, 232, 287, 318, 382, 459, 546, 628, 775
BssNI GRCGYC 7 cut(s) 5, 54, 117, 165, 171, 204, 429
Bst2UI CCWGG 2 cut(s) 365, 491
Bst4CI ACNGT 2 cut(s) 17, 529
Bst6I CTCTTC 1 cut(s) 900
BstACI GRCGYC 7 cut(s) 5, 54, 117, 165, 171, 204, 429
BstC8I GCNNGC 5 cut(s) 156, 169, 175, 214, 227
BstDEI CTNAG 2 cut(s) 9, 452
BstDSI CCRYGG 2 cut(s) 109, 199
BstENI CCTNNNNNAGG 2 cut(s) 245, 890
BstF5I GGATG 4 cut(s) 270, 737, 763, 838
BstFNI CGCG 7 cut(s) 111, 201, 261, 294, 449, 476, 599
BstH2I RGCGCY 4 cut(s) 120, 174, 207, 432
BstKTI GATC 9 cut(s) 145, 235, 290, 321, 385, 462, 549, 631, 778
BstMAI GTCTC 5 cut(s) 12, 193, 271, 428, 839
BstMBI GATC 9 cut(s) 142, 232, 287, 318, 382, 459, 546, 628, 775
BstMWI GCNNNNNNNGC 5 cut(s) 155, 164, 222, 646, 721
BstNI CCWGG 2 cut(s) 365, 491
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 8 cut(s) 363, 489, 503, 521, 540, 683, 828, 854
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 416
BstUI CGCG 7 cut(s) 111, 201, 261, 294, 449, 476, 599
BstV1I GCAGC 2 cut(s) 604, 648
BstV2I GAAGAC 1 cut(s) 586
BstX2I RGATCY 3 cut(s) 287, 318, 775
BstYI RGATCY 3 cut(s) 287, 318, 775
BsuRI GGCC 8 cut(s) 93, 251, 284, 300, 314, 368, 473, 521
BtgI CCRYGG 2 cut(s) 109, 199
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 4 cut(s) 270, 737, 763, 838
Cac8I GCNNGC 5 cut(s) 156, 169, 175, 214, 227
CciI TCATGA 1 cut(s) 549
Cfr10I RCCGGY 4 cut(s) 167, 212, 664, 700
Cfr13I GGNCC 6 cut(s) 313, 471, 486, 520, 525, 670
Cfr42I CCGCGG 2 cut(s) 112, 202
CpoI CGGWCCG 1 cut(s) 525
CseI GACGC 4 cut(s) 62, 173, 283, 455
Csp6I GTAC 1 cut(s) 361
CspI CGGWCCG 1 cut(s) 525
CviAII CATG 3 cut(s) 226, 280, 550
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 2 cut(s) 9, 452
DinI GGCGCC 4 cut(s) 118, 172, 205, 430
DpnI GATC 9 cut(s) 144, 234, 289, 320, 384, 461, 548, 630, 777
DpnII GATC 9 cut(s) 142, 232, 287, 318, 382, 459, 546, 628, 775
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
EaeI YGGCCR 3 cut(s) 282, 298, 366
Eam1104I CTCTTC 1 cut(s) 900
EarI CTCTTC 1 cut(s) 900
EciI GGCGGA 1 cut(s) 472
Ecl136II GAGCTC 1 cut(s) 852
Eco24I GRGCYC 1 cut(s) 854
Eco47I GGWCC 3 cut(s) 486, 525, 670
Eco53kI GAGCTC 1 cut(s) 852
EcoICRI GAGCTC 1 cut(s) 852
EcoNI CCTNNNNNAGG 2 cut(s) 245, 890
EcoRII CCWGG 2 cut(s) 363, 489
EcoT38I GRGCYC 1 cut(s) 854
EgeI GGCGCC 4 cut(s) 118, 172, 205, 430
EheI GGCGCC 4 cut(s) 118, 172, 205, 430
Esp3I CGTCTC 4 cut(s) 12, 193, 271, 839
FaeI CATG 3 cut(s) 229, 283, 553
FatI CATG 3 cut(s) 225, 279, 549
FauI CCCGC 4 cut(s) 206, 299, 856, 868
FblI GTMKAC 1 cut(s) 348
FokI GGATG 4 cut(s) 257, 744, 770, 845
FriOI GRGCYC 1 cut(s) 854
HaeII RGCGCY 4 cut(s) 120, 174, 207, 432
HaeIII GGCC 8 cut(s) 93, 251, 284, 300, 314, 368, 473, 521
HgaI GACGC 4 cut(s) 62, 173, 283, 455
Hin1I GRCGYC 7 cut(s) 5, 54, 117, 165, 171, 204, 429
Hin1II CATG 3 cut(s) 229, 283, 553
HincII GTYRAC 3 cut(s) 340, 349, 394
HindII GTYRAC 3 cut(s) 340, 349, 394
HinfI GANTC 4 cut(s) 70, 436, 553, 900
HphI GGTGA 3 cut(s) 16, 124, 902
Hpy166II GTNNAC 3 cut(s) 340, 349, 394
Hpy188I TCNGA 5 cut(s) 464, 486, 558, 757, 870
Hpy188III TCNNGA 3 cut(s) 11, 532, 550
Hpy8I GTNNAC 3 cut(s) 340, 349, 394
Hpy99I CGWCG 8 cut(s) 56, 128, 299, 311, 353, 374, 380, 449
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 2 cut(s) 17, 529
HpyCH4IV ACGT 2 cut(s) 390, 708
HpyCH4V TGCA 2 cut(s) 20, 724
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 164, 222, 646, 721
HpyF3I CTNAG 2 cut(s) 9, 452
HpySE526I ACGT 2 cut(s) 390, 708
Hsp92I GRCGYC 7 cut(s) 5, 54, 117, 165, 171, 204, 429
Hsp92II CATG 3 cut(s) 229, 283, 553
KasI GGCGCC 4 cut(s) 116, 170, 203, 428
Kpn2I TCCGGA 1 cut(s) 531
KroI GCCGGC 2 cut(s) 167, 212
KroNI GCCGGC 2 cut(s) 169, 214
KspI CCGCGG 2 cut(s) 112, 202
Kzo9I GATC 9 cut(s) 142, 232, 287, 318, 382, 459, 546, 628, 775
LmnI GCTCC 3 cut(s) 111, 182, 857
Lsp1109I GCAGC 2 cut(s) 604, 648
LweI GCATC 2 cut(s) 93, 796
MaeII ACGT 2 cut(s) 390, 708
MaeIII GTNAC 3 cut(s) 22, 130, 694
MalI GATC 9 cut(s) 144, 234, 289, 320, 384, 461, 548, 630, 777
MboI GATC 9 cut(s) 142, 232, 287, 318, 382, 459, 546, 628, 775
MboII GAAGA 3 cut(s) 73, 586, 917
MfeI CAATTG 1 cut(s) 725
MflI RGATCY 3 cut(s) 287, 318, 775
MhlI GDGCHC 2 cut(s) 416, 854
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 4 cut(s) 403, 674, 725, 817
MluNI TGGCCA 1 cut(s) 284
Mly113I GGCGCC 4 cut(s) 117, 171, 204, 429
MlyI GAGTC 2 cut(s) 430, 562
MmeI TCCRAC 1 cut(s) 735
Mox20I TGGCCA 1 cut(s) 284
MreI CGCCGGCG 1 cut(s) 167
MroI TCCGGA 1 cut(s) 531
MroNI GCCGGC 2 cut(s) 167, 212
MscI TGGCCA 1 cut(s) 284
Msp20I TGGCCA 1 cut(s) 284
MspA1I CMGCKG 3 cut(s) 39, 111, 201
MspR9I CCNGG 8 cut(s) 365, 491, 505, 523, 542, 685, 830, 856
MunI CAATTG 1 cut(s) 725
Mva1269I GAATGC 2 cut(s) 216, 570
MvaI CCWGG 2 cut(s) 365, 491
MvnI CGCG 7 cut(s) 111, 201, 261, 294, 449, 476, 599
MwoI GCNNNNNNNGC 5 cut(s) 155, 164, 222, 646, 721
NaeI GCCGGC 2 cut(s) 169, 214
NarI GGCGCC 4 cut(s) 117, 171, 204, 429
NciI CCSGG 6 cut(s) 505, 523, 542, 685, 830, 856
NdeII GATC 9 cut(s) 142, 232, 287, 318, 382, 459, 546, 628, 775
NgoMIV GCCGGC 2 cut(s) 167, 212
NlaIII CATG 3 cut(s) 229, 283, 553
NlaIV GGNNCC 8 cut(s) 118, 172, 205, 413, 430, 472, 488, 777
NmeAIII GCCGAG 3 cut(s) 184, 420, 457
NmuCI GTSAC 3 cut(s) 22, 130, 694
NspI RCATGY 1 cut(s) 229
PaeI GCATGC 1 cut(s) 229
PagI TCATGA 1 cut(s) 549
PasI CCCWGGG 1 cut(s) 490
PcsI WCGNNNNNNNCGW 2 cut(s) 303, 354
PctI GAATGC 2 cut(s) 216, 570
PdiI GCCGGC 2 cut(s) 169, 214
PfeI GAWTC 2 cut(s) 70, 900
PflFI GACNNNGTC 1 cut(s) 344
PleI GAGTC 2 cut(s) 430, 561
PluTI GGCGCC 4 cut(s) 120, 174, 207, 432
PpsI GAGTC 2 cut(s) 430, 561
PsiI TTATAA 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 854
Psp6I CCWGG 2 cut(s) 363, 489
PspGI CCWGG 2 cut(s) 363, 489
PspN4I GGNNCC 8 cut(s) 118, 172, 205, 413, 430, 472, 488, 777
PspPI GGNCC 6 cut(s) 313, 471, 486, 520, 525, 670
PsuI RGATCY 3 cut(s) 287, 318, 775
PsyI GACNNNGTC 1 cut(s) 344
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
Rsr2I CGGWCCG 1 cut(s) 525
RsrII CGGWCCG 1 cut(s) 525
SacI GAGCTC 1 cut(s) 854
SacII CCGCGG 2 cut(s) 112, 202
SalI GTCGAC 1 cut(s) 347
Sau3AI GATC 9 cut(s) 142, 232, 287, 318, 382, 459, 546, 628, 775
Sau96I GGNCC 6 cut(s) 313, 471, 486, 520, 525, 670
SchI GAGTC 2 cut(s) 430, 562
ScrFI CCNGG 8 cut(s) 365, 491, 505, 523, 542, 685, 830, 856
SduI GDGCHC 2 cut(s) 416, 854
SetI ASST 7 cut(s) 90, 156, 366, 393, 711, 854, 925
SfaNI GCATC 2 cut(s) 93, 796
SfcI CTRYAG 1 cut(s) 76
SfoI GGCGCC 4 cut(s) 118, 172, 205, 430
Sfr303I CCGCGG 2 cut(s) 112, 202
SgrAI CRCCGGYG 1 cut(s) 167
SgrBI CCGCGG 2 cut(s) 112, 202
SinI GGWCC 3 cut(s) 486, 525, 670
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SphI GCATGC 1 cut(s) 229
Sse9I AATT 4 cut(s) 403, 674, 725, 817
SspDI GGCGCC 4 cut(s) 116, 170, 203, 428
SstI GAGCTC 1 cut(s) 854
StyD4I CCNGG 8 cut(s) 363, 489, 503, 521, 540, 683, 828, 854
TaaI ACNGT 2 cut(s) 17, 529
TaiI ACGT 2 cut(s) 393, 711
TaqI TCGA 6 cut(s) 59, 126, 309, 324, 348, 903
TasI AATT 4 cut(s) 403, 674, 725, 817
TauI GCSGC 8 cut(s) 42, 114, 117, 204, 209, 212, 429, 476
TfiI GAWTC 2 cut(s) 70, 900
TseFI GTSAC 3 cut(s) 22, 130, 694
TseI GCWGC 2 cut(s) 617, 661
Tsp45I GTSAC 3 cut(s) 22, 130, 694
TspDTI ATGAA 1 cut(s) 603
TspGWI ACGGA 2 cut(s) 169, 768
Tth111I GACNNNGTC 1 cut(s) 344
VpaK11BI GGWCC 3 cut(s) 486, 525, 670
XagI CCTNNNNNAGG 2 cut(s) 245, 890
XceI RCATGY 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.