MD09G1211600.v1.1

pyridoxal biosynthesis protein PDX1.2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014311
Physical Location & Seq
Forward (+)
20658728 .. 20659654
927 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1211600.v1.1.491

Sequence Viewer

Length: 927 bp
ATGGCGGCAGAGGACGGCGCGGTCACAATCTACAACAGCAGCGCAATCACCGATGCCAAAAACAAGCAGAATCCATATTCGATGAAGGTCGGCCTTGCCCAGATGCTCCGCGGCGGCGCCATTGTCGAGGTTAACACCCTCGAGCAAGCCAAGCTCGCCGAAGACGCCGGCGCTTGCTCTGTCATCGTCTCCGACCCGCCCCGCACCCGAGGCATTTCGCGCATGTCCGACCCCTCTCTCATCAAGGACATCAAACGTGCCGTTTCGATCCCCGTCGTGGCCCGATCACGGATCGGGCATTTCGTCGAGGCCCAGATCCTCGAATCCATCGGGGTCGACTATATCGACGAGAGCGAGTATCTGGCCATGGCGGACGAGGAGCATTTCATAAACAAGCACAATTTCCAGATCCCTTTCGTCTGCGGAGCTCAAACTCTCGGCGACGCGTTGTGGAGAGTGAGAGAAGGTGCTGCAGTCATCAGAATCCAAGGGGATCTATCCGGGTCCGGCAATGTCTCCATGACTGTAAAAAACGTGAGGTGCGTAATGGGTCAGATTAGGCTGCTCAACAACATGGACGACGACGAAGTCTTCGCGTTTTCGAAGACAATCCAAGCGCCGTACGACCTGGTTGCTCAATCCAAGCAAATGGGTCGGCTGCCTGTGATGCTATTCGCCGCCGGTGGCATCGTGACGCCGGCCGACGCAGCGCTGATGATGCAGTTGGGTTGCGACGGAGTGTTTATCGGGTCGGATGTATTCAATTGTTCGGATCCGTATAAGCGGGTGATGGGCATTGTTCAGGCGGTTAGGAACTACAATGATCCGCATGTGCTGGTGGAGGTGAGTTCCGGGTTGTCGGGCCTGATGGCGGGTTTGGGCGAGGACAGGATCGAACCGTTTGGCGGCGGCCATGGAGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
ko00750 map00750
Pfam Domains
Protein Families
SOR_SNZ

Protein Analysis

309

Amino Acids

33.0

Weight (kDa)

5.09

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 27 - 227 3.1e-82 SOR/SNZ family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16050
fragaria_vesca FvH4_6g31450
malus_domestica MD09G1211600.v1.1 MD17G1193900.v1.1
prunus_persica Prupe.3G069500_v2.0.a1
pyrus_communis pycom09g12880
rosa_chinensis RchiOBHm_Chr2g0138251
rosa_laevigata RLG00000019729
rosa_multiflora Rmu_sc0004576.1_g000032 Rmu_sc0006570.1_g000010
rosa_roxburghii Rroxscaffold_2G00106380
rosa_rugosa Rorug02G0350300
rosa_samantha Rh2AG396800 Rh2BG409500 Rh2CG383300 Rh2DG418600
rosa_wichuraiana Rw2G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 20, 587
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 336
AccII CGCG 5 cut(s) 20, 111, 220, 446, 596
AclWI GGATC 9 cut(s) 262, 299, 310, 403, 501, 767, 780, 818, 899
AcoI YGGCCR 3 cut(s) 363, 699, 910
AcyI GRCGYC 3 cut(s) 117, 165, 695
AfaI GTAC 1 cut(s) 623
AfeI AGCGCT 1 cut(s) 711
AfiI CCNNNNNNNGG 4 cut(s) 277, 288, 871, 905
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 1 cut(s) 763
AjnI CCWGG 1 cut(s) 627
AluBI AGCT 2 cut(s) 154, 428
AluI AGCT 2 cut(s) 154, 428
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 2 cut(s) 193, 520
AlwI GGATC 9 cut(s) 262, 299, 310, 403, 501, 767, 780, 818, 899
Ama87I CYCGRG 2 cut(s) 140, 207
Aor51HI AGCGCT 1 cut(s) 711
AoxI GGCC 7 cut(s) 91, 279, 309, 363, 699, 862, 910
ApeKI GCWGC 5 cut(s) 39, 470, 562, 658, 707
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AspLEI GCGC 7 cut(s) 20, 44, 119, 173, 222, 619, 712
AspS9I GGNCC 4 cut(s) 280, 310, 504, 862
AsuC2I CCSGG 2 cut(s) 502, 853
AsuHPI GGTGA 3 cut(s) 40, 799, 856
AsuII TTCGAA 1 cut(s) 602
AvaI CYCGRG 2 cut(s) 140, 207
AvaII GGWCC 1 cut(s) 504
BalI TGGCCA 1 cut(s) 365
BamHI GGATCC 1 cut(s) 772
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 430
BbsI GAAGAC 3 cut(s) 168, 583, 611
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 5 cut(s) 51, 457, 549, 645, 719
BccI CCATC 3 cut(s) 335, 784, 862
BceAI ACGGC 3 cut(s) 31, 245, 604
BcgI CGANNNNNNTGC 4 cut(s) 614, 635, 648, 669
BciT130I CCWGG 1 cut(s) 629
BcnI CCSGG 2 cut(s) 502, 853
BcoDI GTCTC 2 cut(s) 193, 520
BfmI CTRYAG 1 cut(s) 471
BfoI RGCGCY 4 cut(s) 120, 174, 620, 713
Bme1390I CCNGG 3 cut(s) 502, 629, 853
Bme18I GGWCC 1 cut(s) 504
BmeT110I CYCGRG 2 cut(s) 140, 207
BmgT120I GGNCC 4 cut(s) 280, 310, 504, 862
BmiI GGNNCC 3 cut(s) 118, 505, 774
BmrFI CCNGG 3 cut(s) 502, 629, 853
BmsI GCATC 5 cut(s) 43, 93, 657, 696, 708
BpiI GAAGAC 3 cut(s) 168, 583, 611
Bpu14I TTCGAA 1 cut(s) 602
BpuMI CCSGG 2 cut(s) 502, 853
BsaHI GRCGYC 3 cut(s) 117, 165, 695
BsaJI CCNNGG 5 cut(s) 109, 208, 366, 487, 913
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 288, 871, 905
Bse118I RCCGGY 3 cut(s) 167, 680, 697
Bse3DI GCAATG 1 cut(s) 517
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 5 cut(s) 109, 208, 366, 487, 913
BseGI GGATG 1 cut(s) 760
BseLI CCNNNNNNNGG 4 cut(s) 277, 288, 871, 905
BseMI GCAATG 1 cut(s) 517
BseRI GAGGAG 1 cut(s) 392
BseX3I CGGCCG 1 cut(s) 699
BseXI GCAGC 5 cut(s) 51, 457, 549, 645, 719
Bsh1236I CGCG 5 cut(s) 20, 111, 220, 446, 596
Bsh1285I CGRYCG 1 cut(s) 702
BshFI GGCC 7 cut(s) 93, 281, 311, 365, 701, 864, 912
BshNI GGYRCC 1 cut(s) 116
BsiEI CGRYCG 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 2 cut(s) 140, 207
BsiSI CCGG 6 cut(s) 168, 501, 507, 681, 698, 852
BsiWI CGTACG 1 cut(s) 621
BslI CCNNNNNNNGG 4 cut(s) 277, 288, 871, 905
BsmAI GTCTC 2 cut(s) 193, 520
BsmBI CGTCTC 1 cut(s) 193
BsnI GGCC 7 cut(s) 93, 281, 311, 365, 701, 864, 912
BsoBI CYCGRG 2 cut(s) 140, 207
Bsp119I TTCGAA 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 823, 891
Bsp19I CCATGG 2 cut(s) 366, 913
BspANI GGCC 7 cut(s) 93, 281, 311, 365, 701, 864, 912
BspFNI CGCG 5 cut(s) 20, 111, 220, 446, 596
BspLI GGNNCC 3 cut(s) 118, 505, 774
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 9 cut(s) 262, 299, 310, 403, 501, 767, 780, 818, 899
BspT104I TTCGAA 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 517
BsrFI RCCGGY 3 cut(s) 167, 680, 697
BssAI RCCGGY 3 cut(s) 167, 680, 697
BssECI CCNNGG 5 cut(s) 109, 208, 366, 487, 913
BssMI GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 823, 891
BssNI GRCGYC 3 cut(s) 117, 165, 695
BssT1I CCWWGG 3 cut(s) 366, 487, 913
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 2 cut(s) 526, 900
BstACI GRCGYC 3 cut(s) 117, 165, 695
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 5 cut(s) 147, 156, 169, 175, 699
BstDSI CCRYGG 3 cut(s) 109, 366, 913
BstF5I GGATG 1 cut(s) 760
BstFNI CGCG 5 cut(s) 20, 111, 220, 446, 596
BstH2I RGCGCY 4 cut(s) 120, 174, 620, 713
BstHHI GCGC 7 cut(s) 20, 44, 119, 173, 222, 619, 712
BstKTI GATC 9 cut(s) 270, 287, 294, 318, 411, 496, 775, 826, 894
BstMAI GTCTC 2 cut(s) 193, 520
BstMBI GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 823, 891
BstMCI CGRYCG 1 cut(s) 702
BstMWI GCNNNNNNNGC 8 cut(s) 151, 155, 164, 210, 219, 667, 707, 718
BstNI CCWGG 1 cut(s) 629
BstNSI RCATGY 2 cut(s) 226, 833
BstSCI CCNGG 3 cut(s) 500, 627, 851
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 5 cut(s) 20, 111, 220, 446, 596
BstV1I GCAGC 5 cut(s) 51, 457, 549, 645, 719
BstV2I GAAGAC 3 cut(s) 168, 583, 611
BstX2I RGATCY 4 cut(s) 315, 408, 493, 772
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 4 cut(s) 315, 408, 493, 772
BstZI CGGCCG 1 cut(s) 699
BsuRI GGCC 7 cut(s) 93, 281, 311, 365, 701, 864, 912
BtgI CCRYGG 3 cut(s) 109, 366, 913
BtsCI GGATG 1 cut(s) 760
Cac8I GCNNGC 5 cut(s) 147, 156, 169, 175, 699
CfoI GCGC 7 cut(s) 20, 44, 119, 173, 222, 619, 712
Cfr10I RCCGGY 3 cut(s) 167, 680, 697
Cfr13I GGNCC 4 cut(s) 280, 310, 504, 862
Cfr42I CCGCGG 1 cut(s) 112
CseI GACGC 4 cut(s) 173, 452, 703, 713
CsiI ACCWGGT 1 cut(s) 627
Csp6I GTAC 1 cut(s) 622
CviAII CATG 6 cut(s) 223, 367, 520, 574, 830, 914
CviQI GTAC 1 cut(s) 622
DinI GGCGCC 1 cut(s) 118
DpnI GATC 9 cut(s) 269, 286, 293, 317, 410, 495, 774, 825, 893
DpnII GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 823, 891
DrdI GACNNNNNNGTC 2 cut(s) 20, 587
DseDI GACNNNNNNGTC 2 cut(s) 20, 587
EaeI YGGCCR 3 cut(s) 363, 699, 910
EagI CGGCCG 1 cut(s) 699
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 428
EclXI CGGCCG 1 cut(s) 699
Eco130I CCWWGG 3 cut(s) 366, 487, 913
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 504
Eco47III AGCGCT 1 cut(s) 711
Eco52I CGGCCG 1 cut(s) 699
Eco53kI GAGCTC 1 cut(s) 428
Eco88I CYCGRG 2 cut(s) 140, 207
EcoICRI GAGCTC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 627
EcoT14I CCWWGG 3 cut(s) 366, 487, 913
EcoT38I GRGCYC 1 cut(s) 430
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
ErhI CCWWGG 3 cut(s) 366, 487, 913
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 6 cut(s) 226, 370, 523, 577, 833, 917
FatI CATG 6 cut(s) 222, 366, 519, 573, 829, 913
FauI CCCGC 4 cut(s) 204, 209, 777, 865
FblI GTMKAC 1 cut(s) 336
FokI GGATG 1 cut(s) 767
FriOI GRGCYC 1 cut(s) 430
GlaI GCGC 7 cut(s) 19, 43, 118, 172, 221, 618, 711
HaeII RGCGCY 4 cut(s) 120, 174, 620, 713
HaeIII GGCC 7 cut(s) 93, 281, 311, 365, 701, 864, 912
HapII CCGG 6 cut(s) 168, 501, 507, 681, 698, 852
HgaI GACGC 4 cut(s) 173, 452, 703, 713
HhaI GCGC 7 cut(s) 20, 44, 119, 173, 222, 619, 712
Hin1I GRCGYC 3 cut(s) 117, 165, 695
Hin1II CATG 6 cut(s) 226, 370, 523, 577, 833, 917
Hin6I GCGC 7 cut(s) 18, 42, 117, 171, 220, 617, 710
HinP1I GCGC 7 cut(s) 18, 42, 117, 171, 220, 617, 710
HincII GTYRAC 2 cut(s) 133, 337
HindII GTYRAC 2 cut(s) 133, 337
HinfI GANTC 3 cut(s) 70, 323, 483
HpaI GTTAAC 1 cut(s) 133
HpaII CCGG 6 cut(s) 168, 501, 507, 681, 698, 852
HphI GGTGA 3 cut(s) 40, 799, 856
Hpy166II GTNNAC 2 cut(s) 133, 337
Hpy188I TCNGA 6 cut(s) 193, 229, 482, 555, 754, 772
Hpy188III TCNNGA 2 cut(s) 406, 691
Hpy8I GTNNAC 2 cut(s) 133, 337
Hpy99I CGWCG 8 cut(s) 278, 308, 350, 446, 584, 587, 707, 737
HpyAV CCTTC 2 cut(s) 79, 458
HpyCH4III ACNGT 2 cut(s) 526, 900
HpyCH4IV ACGT 2 cut(s) 256, 534
HpyCH4V TGCA 2 cut(s) 473, 721
HpyF10VI GCNNNNNNNGC 8 cut(s) 151, 155, 164, 210, 219, 667, 707, 718
HpySE526I ACGT 2 cut(s) 256, 534
Hsp92I GRCGYC 3 cut(s) 117, 165, 695
Hsp92II CATG 6 cut(s) 226, 370, 523, 577, 833, 917
HspAI GCGC 7 cut(s) 18, 42, 117, 171, 220, 617, 710
KasI GGCGCC 1 cut(s) 116
KroI GCCGGC 2 cut(s) 167, 697
KroNI GCCGGC 2 cut(s) 169, 699
KspAI GTTAAC 1 cut(s) 133
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 823, 891
LmnI GCTCC 3 cut(s) 111, 379, 425
Lsp1109I GCAGC 5 cut(s) 51, 457, 549, 645, 719
LweI GCATC 5 cut(s) 43, 93, 657, 696, 708
MabI ACCWGGT 1 cut(s) 627
MaeII ACGT 2 cut(s) 256, 534
MaeIII GTNAC 2 cut(s) 22, 691
MalI GATC 9 cut(s) 269, 286, 293, 317, 410, 495, 774, 825, 893
MboI GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 823, 891
MboII GAAGA 3 cut(s) 173, 583, 616
MfeI CAATTG 1 cut(s) 763
MflI RGATCY 4 cut(s) 315, 408, 493, 772
MhlI GDGCHC 1 cut(s) 430
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 2 cut(s) 400, 763
MluI ACGCGT 1 cut(s) 444
MluNI TGGCCA 1 cut(s) 365
Mly113I GGCGCC 1 cut(s) 117
MmeI TCCRAC 3 cut(s) 216, 252, 732
Mox20I TGGCCA 1 cut(s) 365
MreI CGCCGGCG 1 cut(s) 167
MroNI GCCGGC 2 cut(s) 167, 697
MscI TGGCCA 1 cut(s) 365
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 918
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 6 cut(s) 168, 501, 507, 681, 698, 852
MspR9I CCNGG 3 cut(s) 502, 629, 853
MunI CAATTG 1 cut(s) 763
MvaI CCWGG 1 cut(s) 629
MvnI CGCG 5 cut(s) 20, 111, 220, 446, 596
MwoI GCNNNNNNNGC 8 cut(s) 151, 155, 164, 210, 219, 667, 707, 718
NaeI GCCGGC 2 cut(s) 169, 699
NarI GGCGCC 1 cut(s) 117
NciI CCSGG 2 cut(s) 502, 853
NcoI CCATGG 2 cut(s) 366, 913
NdeII GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 823, 891
NgoMIV GCCGGC 2 cut(s) 167, 697
NlaIII CATG 6 cut(s) 226, 370, 523, 577, 833, 917
NlaIV GGNNCC 3 cut(s) 118, 505, 774
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 22, 691
NspI RCATGY 2 cut(s) 226, 833
NspV TTCGAA 1 cut(s) 602
PaeR7I CTCGAG 1 cut(s) 140
PcsI WCGNNNNNNNCGW 4 cut(s) 300, 342, 351, 540
PdiI GCCGGC 2 cut(s) 169, 699
PfeI GAWTC 3 cut(s) 70, 323, 483
Pfl23II CGTACG 1 cut(s) 621
PflFI GACNNNGTC 1 cut(s) 587
PluTI GGCGCC 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 627
PspGI CCWGG 1 cut(s) 627
PspLI CGTACG 1 cut(s) 621
PspN4I GGNNCC 3 cut(s) 118, 505, 774
PspPI GGNCC 4 cut(s) 280, 310, 504, 862
PspXI VCTCGAGB 1 cut(s) 140
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 4 cut(s) 315, 408, 493, 772
PsyI GACNNNGTC 1 cut(s) 587
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 918
SacI GAGCTC 1 cut(s) 430
SacII CCGCGG 1 cut(s) 112
SalI GTCGAC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 9 cut(s) 267, 284, 291, 315, 408, 493, 772, 823, 891
Sau96I GGNCC 4 cut(s) 280, 310, 504, 862
ScrFI CCNGG 3 cut(s) 502, 629, 853
SduI GDGCHC 1 cut(s) 430
SexAI ACCWGGT 1 cut(s) 627
SfaNI GCATC 5 cut(s) 43, 93, 657, 696, 708
SfcI CTRYAG 1 cut(s) 471
SfoI GGCGCC 1 cut(s) 118
Sfr274I CTCGAG 1 cut(s) 140
Sfr303I CCGCGG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 602
SgrAI CRCCGGYG 2 cut(s) 167, 680
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 1 cut(s) 504
SlaI CTCGAG 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 2 cut(s) 400, 763
SspDI GGCGCC 1 cut(s) 116
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 3 cut(s) 500, 627, 851
StyI CCWWGG 3 cut(s) 366, 487, 913
TaaI ACNGT 2 cut(s) 526, 900
TaiI ACGT 2 cut(s) 259, 537
TasI AATT 2 cut(s) 400, 763
TauI GCSGC 6 cut(s) 8, 114, 117, 680, 909, 912
TfiI GAWTC 3 cut(s) 70, 323, 483
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseFI GTSAC 2 cut(s) 22, 691
TseI GCWGC 5 cut(s) 39, 470, 562, 658, 707
Tsp45I GTSAC 2 cut(s) 22, 691
TspDTI ATGAA 2 cut(s) 98, 376
TspGWI ACGGA 3 cut(s) 304, 750, 765
Tth111I GACNNNGTC 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 504
XceI RCATGY 2 cut(s) 226, 833
XhoI CTCGAG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.