MD17G1193900.v1.1

pyridoxal biosynthesis protein PDX1.2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014311
Physical Location & Seq
Forward (+)
23269825 .. 23270757
933 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1193900.v1.1.491

Sequence Viewer

Length: 933 bp
ATGGCGGCAGAGGACGGCGCGGTCACAATCTACAACAGCAGCGCAATCACCGACGCCAACAACAAGAAGAAGCCATATTCGATCAAGGTCGGCCTCGCCCAGATGCTCCGCGGCGGCACCATTGTTGAGGTGAACACCCCCGAGCAAGCAAGGCTCGCCGAAGACGCGGGCGCTTGCTCCGTCATCGTCTCCGACCCGCTCCGCAACCGAGGCATTTCGCGCATGTCCGACCCCTGTCTCATCAAGGACATCAAACGTGCCGTTTCGATACCCGTCGTGGCCCGATCACGGATCGGGCATTTCGTCGAGGCCCAGATCCTCGAATCAATCGGCGTCGACTACATCGACGAGAGCGAGTATCTAGCGATGGCGGACGAGGAACATTTCATAAACAAGCACAATTTCCAGACCCCTTTCATCTGCGGAGCTCAAACGCTCGGCGACGCGTTGAGGAGAGTGAGAGAAGGCGCGGCGATCATACGAATCCAAGGCGATCTAACCGGGTCCGGCAACGTCGCCATGACTGTAAAAAACGTCAGATCCGTGATGGGTCAGATTAGGCTGCTCAACAACATGGACGACGACGAAGTCTTCGCGTTTTCGAAGACGATTCAAGCACCGTACGACCTGGTTGCACAATCCAAGCAAATGGGTCGGCTGCCGGTGGTGCTGTTCGCCTCCGGTGGCATCGTGACGCCGGCCGACGTGGCGTTGATGATGCAATTGGGTTGCGACGGAGTGTTTATCGGGTCGGATGTATTCAATTGCTCGGATCCGTATAAGCGGGTGATCGACATTGTTCAGGCGGTTAGGAACTACAACGATCCGCATGTGCTGGTGGAGGTGAGTTCCGGGTTGTCGGATCTGATGGCGGGTTTGGGTTTCGGTGAGGACAGGATCGAACAGTTTGGCAGCGGCCACGGAGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
ko00750 map00750
Pfam Domains
Protein Families
SOR_SNZ

Protein Analysis

311

Amino Acids

33.41

Weight (kDa)

5.11

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 27 - 226 7.7e-84 SOR/SNZ family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16050
fragaria_vesca FvH4_6g31450
malus_domestica MD09G1211600.v1.1 MD17G1193900.v1.1
prunus_persica Prupe.3G069500_v2.0.a1
pyrus_communis pycom09g12880
rosa_chinensis RchiOBHm_Chr2g0138251
rosa_laevigata RLG00000019729
rosa_multiflora Rmu_sc0004576.1_g000032 Rmu_sc0006570.1_g000010
rosa_roxburghii Rroxscaffold_2G00106380
rosa_rugosa Rorug02G0350300
rosa_samantha Rh2AG396800 Rh2BG409500 Rh2CG383300 Rh2DG418600
rosa_wichuraiana Rw2G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 20, 587
AccB1I GGYRCC 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 199
AccI GTMKAC 1 cut(s) 336
AccII CGCG 7 cut(s) 20, 111, 167, 220, 446, 470, 596
AclWI GGATC 8 cut(s) 299, 310, 534, 767, 780, 818, 870, 905
AcoI YGGCCR 2 cut(s) 699, 916
AcyI GRCGYC 3 cut(s) 54, 333, 695
AfaI GTAC 1 cut(s) 623
AfiI CCNNNNNNNGG 1 cut(s) 288
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 2 cut(s) 614, 763
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 1 cut(s) 627
AleI CACNNNNGTG 1 cut(s) 924
AluBI AGCT 1 cut(s) 428
AluI AGCT 1 cut(s) 428
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 2 cut(s) 193, 242
AlwI GGATC 8 cut(s) 299, 310, 534, 767, 780, 818, 870, 905
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 5 cut(s) 91, 279, 309, 699, 916
ApeKI GCWGC 4 cut(s) 39, 562, 658, 912
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AspLEI GCGC 5 cut(s) 20, 44, 173, 222, 470
AspS9I GGNCC 3 cut(s) 280, 310, 504
AsuC2I CCSGG 2 cut(s) 502, 853
AsuHPI GGTGA 5 cut(s) 40, 142, 799, 856, 899
AsuII TTCGAA 1 cut(s) 602
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 504
BamHI GGATCC 1 cut(s) 772
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 430
BbsI GAAGAC 3 cut(s) 168, 583, 611
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 4 cut(s) 51, 549, 645, 924
BccI CCATC 3 cut(s) 361, 541, 862
BceAI ACGGC 2 cut(s) 31, 245
BcgI CGANNNNNNTGC 4 cut(s) 614, 635, 648, 669
BciT130I CCWGG 1 cut(s) 629
BcnI CCSGG 2 cut(s) 502, 853
BcoDI GTCTC 2 cut(s) 193, 242
BfaI CTAG 1 cut(s) 362
BfoI RGCGCY 1 cut(s) 174
BglI GCCNNNNNGGC 1 cut(s) 707
BisI GCNGC 9 cut(s) 6, 40, 112, 115, 471, 563, 659, 913, 916
BlsI GCNGC 9 cut(s) 7, 41, 113, 116, 472, 564, 660, 914, 917
Bme1390I CCNGG 3 cut(s) 502, 629, 853
Bme18I GGWCC 1 cut(s) 504
BmeT110I CYCGRG 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 706
BmgT120I GGNCC 3 cut(s) 280, 310, 504
BmiI GGNNCC 3 cut(s) 118, 505, 774
BmrFI CCNGG 3 cut(s) 502, 629, 853
BmsI GCATC 3 cut(s) 93, 696, 708
BoxI GACNNNNGTC 1 cut(s) 234
BpiI GAAGAC 3 cut(s) 168, 583, 611
Bpu14I TTCGAA 1 cut(s) 602
BpuMI CCSGG 2 cut(s) 502, 853
BsaHI GRCGYC 3 cut(s) 54, 333, 695
BsaJI CCNNGG 4 cut(s) 109, 208, 487, 919
BsaWI WCCGGW 1 cut(s) 680
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse118I RCCGGY 2 cut(s) 661, 697
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 4 cut(s) 109, 208, 487, 919
BseGI GGATG 1 cut(s) 760
BseLI CCNNNNNNNGG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 466
BseX3I CGGCCG 1 cut(s) 699
BseXI GCAGC 4 cut(s) 51, 549, 645, 924
Bsh1236I CGCG 7 cut(s) 20, 111, 167, 220, 446, 470, 596
Bsh1285I CGRYCG 1 cut(s) 702
BshFI GGCC 5 cut(s) 93, 281, 311, 701, 918
BshNI GGYRCC 1 cut(s) 116
BsiEI CGRYCG 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 6 cut(s) 501, 507, 662, 681, 698, 852
BsiWI CGTACG 1 cut(s) 621
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 2 cut(s) 193, 242
BsmBI CGTCTC 1 cut(s) 193
BsnI GGCC 5 cut(s) 93, 281, 311, 701, 918
BsoBI CYCGRG 1 cut(s) 140
Bsp119I TTCGAA 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 430
BspANI GGCC 5 cut(s) 93, 281, 311, 701, 918
BspFNI CGCG 7 cut(s) 20, 111, 167, 220, 446, 470, 596
BspLI GGNNCC 3 cut(s) 118, 505, 774
BspPI GGATC 8 cut(s) 299, 310, 534, 767, 780, 818, 870, 905
BspT104I TTCGAA 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 199
BsrFI RCCGGY 2 cut(s) 661, 697
BssAI RCCGGY 2 cut(s) 661, 697
BssECI CCNNGG 4 cut(s) 109, 208, 487, 919
BssNI GRCGYC 3 cut(s) 54, 333, 695
BssT1I CCWWGG 1 cut(s) 487
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 3 cut(s) 526, 621, 906
BstACI GRCGYC 3 cut(s) 54, 333, 695
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 5 cut(s) 147, 156, 169, 175, 699
BstDSI CCRYGG 2 cut(s) 109, 919
BstF5I GGATG 1 cut(s) 760
BstFNI CGCG 7 cut(s) 20, 111, 167, 220, 446, 470, 596
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 5 cut(s) 20, 44, 173, 222, 470
BstMAI GTCTC 2 cut(s) 193, 242
BstMCI CGRYCG 1 cut(s) 702
BstMWI GCNNNNNNNGC 7 cut(s) 151, 155, 164, 210, 219, 667, 707
BstNI CCWGG 1 cut(s) 629
BstNSI RCATGY 2 cut(s) 226, 833
BstPAI GACNNNNGTC 1 cut(s) 234
BstSCI CCNGG 3 cut(s) 500, 627, 851
BstUI CGCG 7 cut(s) 20, 111, 167, 220, 446, 470, 596
BstV1I GCAGC 4 cut(s) 51, 549, 645, 924
BstV2I GAAGAC 3 cut(s) 168, 583, 611
BstX2I RGATCY 4 cut(s) 315, 539, 772, 862
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 4 cut(s) 315, 539, 772, 862
BstZI CGGCCG 1 cut(s) 699
BsuRI GGCC 5 cut(s) 93, 281, 311, 701, 918
BtgI CCRYGG 2 cut(s) 109, 919
BtgZI GCGATG 1 cut(s) 380
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 1 cut(s) 760
Cac8I GCNNGC 5 cut(s) 147, 156, 169, 175, 699
CfoI GCGC 5 cut(s) 20, 44, 173, 222, 470
Cfr10I RCCGGY 2 cut(s) 661, 697
Cfr13I GGNCC 3 cut(s) 280, 310, 504
Cfr42I CCGCGG 1 cut(s) 112
CseI GACGC 5 cut(s) 62, 173, 322, 452, 703
CsiI ACCWGGT 1 cut(s) 627
Csp6I GTAC 1 cut(s) 622
CviAII CATG 4 cut(s) 223, 520, 574, 830
CviQI GTAC 1 cut(s) 622
DrdI GACNNNNNNGTC 2 cut(s) 20, 587
DseDI GACNNNNNNGTC 2 cut(s) 20, 587
EaeI YGGCCR 2 cut(s) 699, 916
EagI CGGCCG 1 cut(s) 699
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 428
EclXI CGGCCG 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 487
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 504
Eco52I CGGCCG 1 cut(s) 699
Eco53kI GAGCTC 1 cut(s) 428
Eco88I CYCGRG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 627
EcoT14I CCWWGG 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 487
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 4 cut(s) 226, 523, 577, 833
FaiI YATR 8 cut(s) 76, 224, 389, 479, 521, 575, 780, 831
FatI CATG 4 cut(s) 222, 519, 573, 829
FauI CCCGC 4 cut(s) 160, 204, 777, 865
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 9 cut(s) 6, 40, 112, 115, 471, 563, 659, 913, 916
FokI GGATG 1 cut(s) 767
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 9 cut(s) 6, 40, 112, 115, 471, 563, 659, 913, 916
FspBI CTAG 1 cut(s) 362
GlaI GCGC 5 cut(s) 19, 43, 172, 221, 469
GluI GCNGC 9 cut(s) 6, 40, 112, 115, 471, 563, 659, 913, 916
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 5 cut(s) 93, 281, 311, 701, 918
HapII CCGG 6 cut(s) 501, 507, 662, 681, 698, 852
HgaI GACGC 5 cut(s) 62, 173, 322, 452, 703
HhaI GCGC 5 cut(s) 20, 44, 173, 222, 470
Hin1I GRCGYC 3 cut(s) 54, 333, 695
Hin1II CATG 4 cut(s) 226, 523, 577, 833
Hin6I GCGC 5 cut(s) 18, 42, 171, 220, 468
HinP1I GCGC 5 cut(s) 18, 42, 171, 220, 468
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 3 cut(s) 323, 483, 610
HpaII CCGG 6 cut(s) 501, 507, 662, 681, 698, 852
HphI GGTGA 5 cut(s) 40, 142, 799, 856, 899
Hpy166II GTNNAC 2 cut(s) 133, 337
Hpy188I TCNGA 8 cut(s) 193, 229, 539, 555, 754, 772, 862, 867
Hpy188III TCNNGA 2 cut(s) 406, 691
Hpy8I GTNNAC 2 cut(s) 133, 337
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 3 cut(s) 526, 621, 906
HpyCH4IV ACGT 4 cut(s) 256, 513, 534, 705
HpyCH4V TGCA 2 cut(s) 635, 721
HpyF10VI GCNNNNNNNGC 7 cut(s) 151, 155, 164, 210, 219, 667, 707
HpySE526I ACGT 4 cut(s) 256, 513, 534, 705
Hsp92I GRCGYC 3 cut(s) 54, 333, 695
Hsp92II CATG 4 cut(s) 226, 523, 577, 833
HspAI GCGC 5 cut(s) 18, 42, 171, 220, 468
KroI GCCGGC 1 cut(s) 697
KroNI GCCGGC 1 cut(s) 699
KspI CCGCGG 1 cut(s) 112
LmnI GCTCC 4 cut(s) 111, 182, 204, 425
Lsp1109I GCAGC 4 cut(s) 51, 549, 645, 924
LweI GCATC 3 cut(s) 93, 696, 708
MabI ACCWGGT 1 cut(s) 627
MaeI CTAG 1 cut(s) 362
MaeII ACGT 4 cut(s) 256, 513, 534, 705
MaeIII GTNAC 2 cut(s) 22, 691
MbiI CCGCTC 1 cut(s) 199
MboII GAAGA 4 cut(s) 79, 173, 583, 616
MfeI CAATTG 2 cut(s) 722, 763
MflI RGATCY 4 cut(s) 315, 539, 772, 862
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 3 cut(s) 400, 722, 763
MluI ACGCGT 1 cut(s) 444
MmeI TCCRAC 4 cut(s) 216, 252, 732, 840
MroNI GCCGGC 1 cut(s) 697
MslI CAYNNNNRTG 1 cut(s) 924
MspA1I CMGCKG 2 cut(s) 111, 915
MspI CCGG 6 cut(s) 501, 507, 662, 681, 698, 852
MspR9I CCNGG 3 cut(s) 502, 629, 853
MunI CAATTG 2 cut(s) 722, 763
MvaI CCWGG 1 cut(s) 629
MvnI CGCG 7 cut(s) 20, 111, 167, 220, 446, 470, 596
MwoI GCNNNNNNNGC 7 cut(s) 151, 155, 164, 210, 219, 667, 707
NaeI GCCGGC 1 cut(s) 699
NciI CCSGG 2 cut(s) 502, 853
NgoMIV GCCGGC 1 cut(s) 697
NlaIII CATG 4 cut(s) 226, 523, 577, 833
NlaIV GGNNCC 3 cut(s) 118, 505, 774
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 22, 691
NspI RCATGY 2 cut(s) 226, 833
NspV TTCGAA 1 cut(s) 602
OliI CACNNNNGTG 1 cut(s) 924
PcsI WCGNNNNNNNCGW 4 cut(s) 300, 342, 351, 540
PdiI GCCGGC 1 cut(s) 699
PfeI GAWTC 3 cut(s) 323, 483, 610
Pfl23II CGTACG 1 cut(s) 621
PflFI GACNNNGTC 1 cut(s) 587
PkrI GCNGC 9 cut(s) 7, 41, 113, 116, 472, 564, 660, 914, 917
PshAI GACNNNNGTC 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 627
PspGI CCWGG 1 cut(s) 627
PspLI CGTACG 1 cut(s) 621
PspN4I GGNNCC 3 cut(s) 118, 505, 774
PspPI GGNCC 3 cut(s) 280, 310, 504
PsuI RGATCY 4 cut(s) 315, 539, 772, 862
PsyI GACNNNGTC 1 cut(s) 587
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 924
SacI GAGCTC 1 cut(s) 430
SacII CCGCGG 1 cut(s) 112
SalI GTCGAC 1 cut(s) 335
SatI GCNGC 9 cut(s) 6, 40, 112, 115, 471, 563, 659, 913, 916
Sau96I GGNCC 3 cut(s) 280, 310, 504
ScrFI CCNGG 3 cut(s) 502, 629, 853
SduI GDGCHC 1 cut(s) 430
SexAI ACCWGGT 1 cut(s) 627
SfaNI GCATC 3 cut(s) 93, 696, 708
Sfr303I CCGCGG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 602
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 924
Sse9I AATT 3 cut(s) 400, 722, 763
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 3 cut(s) 500, 627, 851
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 3 cut(s) 526, 621, 906
TaiI ACGT 4 cut(s) 259, 516, 537, 708
TaqI TCGA 9 cut(s) 80, 266, 306, 321, 336, 345, 602, 792, 900
TasI AATT 3 cut(s) 400, 722, 763
TauI GCSGC 5 cut(s) 8, 114, 117, 473, 918
TfiI GAWTC 3 cut(s) 323, 483, 610
TseFI GTSAC 2 cut(s) 22, 691
TseI GCWGC 4 cut(s) 39, 562, 658, 912
Tsp45I GTSAC 2 cut(s) 22, 691
TspDTI ATGAA 2 cut(s) 376, 406
TspGWI ACGGA 5 cut(s) 169, 304, 532, 750, 765
Tth111I GACNNNGTC 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 504
XceI RCATGY 2 cut(s) 226, 833
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.