Rorug02G0350300

Belongs to the PdxS SNZ family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014311
Physical Location & Seq
Forward (+)
44023075 .. 44026276
3202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0350300.1

Sequence Viewer

Length: 876 bp
ATGGCACAAGAACAGTCTGCTGTCTCTCTTCTTCTTGATCTGGATGATACCTCCTTGTCAGCACTGATTCATCATGACTCTGATGATCCTGAAGATGAGATTCGCATCGATCCGACGATGATATCAGATGCCAAATACGCAGAAGAGTTGCAGTTCCAAGAGGCTATAATGGCGTCTTCTGCCTTCATTTCCCAAAACATGAGCAACATCGCGTCGTGTTCCTCATCAACTCTGACAATCCAAGCAGCCCAAGCAGTCCCATCCAGTGCAACCCATGAAGTCCTTGACCCAGAAACCCAAACCCTATGTGGGATTTGCGTTGAAGTCAAAGAGAATAACCAGATGTTCTCAAATGAAAGCTGTGCTCACTCCTTCTGCTCAGATTGCATAACCAGACAAGTAGCCGCGAAACTGGACGAGAGCTTTCACATTGTTTCCTGCCCCGGATTGGATTGCAAAGCAGTCCTCAAATTTGAGGATTGTACCCCAATTCTCCCCAAATTGGTTCTCGAAAGGTGGAATGATGCCCTTTGTGAAGCCTTGTTCGTGGGGTCGCAGAAACTCTACTGCCCTTTCAGTGATTGCTCAATGGTTTTGGTGATCGAGAACGAAGGGGAGGCAGTGAGAGAGTCAGAGTGCCCTGCTTGCCATAGACTGTTCTGCGCCGGATGTCAGGTTCCGTGGCATTCTGGGGTTGATTGTGAGGAGTTTCAGATGCTTAACGAGGACGAGAGAGGGAGGGAAGATCTTATGGTCAATCAGCTTGCAAAGGAGAAGAAGTGGAAGAGGTGCCCCAGGTGCCACTTTTATGTGGAGAAGACTCAAGGTTGTTTGCACATTTCTTGCAGGTCCATTGGGGAAATTACCGTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
ko00750 map00750
Pfam Domains
Protein Families
SOR_SNZ

Protein Analysis

291

Amino Acids

32.33

Weight (kDa)

4.58

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 173 - 234 2.6e-10 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014311)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16050
fragaria_vesca FvH4_6g31450
malus_domestica MD09G1211600.v1.1 MD17G1193900.v1.1
prunus_persica Prupe.3G069500_v2.0.a1
pyrus_communis pycom09g12880
rosa_chinensis RchiOBHm_Chr2g0138251
rosa_laevigata RLG00000019729
rosa_multiflora Rmu_sc0004576.1_g000032 Rmu_sc0006570.1_g000010
rosa_roxburghii Rroxscaffold_2G00106380
rosa_rugosa Rorug02G0350300
rosa_samantha Rh2AG396800 Rh2BG409500 Rh2CG383300 Rh2DG418600
rosa_wichuraiana Rw2G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 837
AccB1I GGYRCC 2 cut(s) 789, 798
AccII CGCG 2 cut(s) 212, 407
AciI CCGC 1 cut(s) 405
AclWI GGATC 2 cut(s) 80, 104
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 3 cut(s) 309, 448, 502
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 794
AloI GAACNNNNNNTCC 2 cut(s) 660, 692
AluBI AGCT 3 cut(s) 360, 423, 763
AluI AGCT 3 cut(s) 360, 423, 763
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 2 cut(s) 80, 104
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 470
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 1 cut(s) 849
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 610
AvaII GGWCC 1 cut(s) 849
BaeGI GKGCMC 2 cut(s) 641, 794
BanI GGYRCC 2 cut(s) 789, 798
BbsI GAAGAC 2 cut(s) 168, 824
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 257
BccI CCATC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 796
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 28
BfuAI ACCTGC 1 cut(s) 837
BglII AGATCT 1 cut(s) 745
BisI GCNGC 2 cut(s) 246, 405
BlsI GCNGC 2 cut(s) 247, 406
Bme1390I CCNGG 2 cut(s) 444, 796
Bme18I GGWCC 1 cut(s) 849
BmgT120I GGNCC 1 cut(s) 849
BmiI GGNNCC 3 cut(s) 678, 791, 800
BmrFI CCNGG 2 cut(s) 444, 796
BmsI GCATC 4 cut(s) 114, 118, 514, 705
BpiI GAAGAC 2 cut(s) 168, 824
BpuEI CTTGAG 1 cut(s) 807
BpuMI CCSGG 1 cut(s) 444
Bsa29I ATCGAT 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 3 cut(s) 442, 680, 794
BsaXI ACNNNNNCTCC 2 cut(s) 764, 794
Bsc4I CCNNNNNNNGG 3 cut(s) 309, 448, 502
Bse1I ACTGG 2 cut(s) 264, 417
Bse8I GATNNNNATC 1 cut(s) 104
BseBI CCWGG 1 cut(s) 796
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 442, 680, 794
BseGI GGATG 3 cut(s) 49, 260, 674
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 3 cut(s) 309, 448, 502
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 2 cut(s) 264, 417
BseRI GAGGAG 1 cut(s) 719
BseSI GKGCMC 2 cut(s) 641, 794
BseXI GCAGC 1 cut(s) 257
Bsh1236I CGCG 2 cut(s) 212, 407
BshNI GGYRCC 2 cut(s) 789, 798
BshVI ATCGAT 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 367
BsiSI CCGG 2 cut(s) 444, 666
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 309, 448, 502
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 685
Bsp1286I GDGCHC 3 cut(s) 367, 641, 794
Bsp143I GATC 5 cut(s) 37, 85, 109, 600, 745
BspACI CCGC 1 cut(s) 405
BspCNI CTCAG 1 cut(s) 392
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 2 cut(s) 212, 407
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 3 cut(s) 678, 791, 800
BspMI ACCTGC 1 cut(s) 837
BspPI GGATC 2 cut(s) 80, 104
BspT107I GGYRCC 2 cut(s) 789, 798
BsrI ACTGG 2 cut(s) 264, 417
BssECI CCNNGG 3 cut(s) 442, 680, 794
BssMI GATC 5 cut(s) 37, 85, 109, 600, 745
BssNI GRCGYC 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 796
Bst4CI ACNGT 3 cut(s) 15, 657, 868
Bst6I CTCTTC 3 cut(s) 33, 138, 779
BstACI GRCGYC 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 646, 765
BstDEI CTNAG 1 cut(s) 379
BstDSI CCRYGG 1 cut(s) 680
BstF5I GGATG 3 cut(s) 49, 260, 674
BstFNI CGCG 2 cut(s) 212, 407
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 5 cut(s) 40, 88, 112, 603, 748
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 5 cut(s) 37, 85, 109, 600, 745
BstMWI GCNNNNNNNGC 7 cut(s) 137, 170, 179, 251, 384, 645, 798
BstNI CCWGG 1 cut(s) 796
BstSCI CCNGG 2 cut(s) 442, 794
BstSLI GKGCMC 2 cut(s) 641, 794
BstUI CGCG 2 cut(s) 212, 407
BstV1I GCAGC 1 cut(s) 257
BstV2I GAAGAC 2 cut(s) 168, 824
BstX2I RGATCY 1 cut(s) 745
BstYI RGATCY 1 cut(s) 745
Bsu15I ATCGAT 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 680
BtgZI GCGATG 1 cut(s) 193
BtsCI GGATG 3 cut(s) 49, 260, 674
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 4 cut(s) 62, 271, 583, 627
BveI ACCTGC 1 cut(s) 837
Cac8I GCNNGC 2 cut(s) 646, 765
CciI TCATGA 1 cut(s) 73
CfoI GCGC 1 cut(s) 665
Cfr13I GGNCC 1 cut(s) 849
ClaI ATCGAT 1 cut(s) 108
CseI GACGC 2 cut(s) 162, 201
Csp6I GTAC 1 cut(s) 483
CviAII CATG 3 cut(s) 74, 199, 275
CviJI RGCY 7 cut(s) 164, 248, 360, 404, 423, 539, 763
CviKI_1 RGCY 7 cut(s) 164, 248, 360, 404, 423, 539, 763
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 1 cut(s) 379
DpnI GATC 5 cut(s) 39, 87, 111, 602, 747
DpnII GATC 5 cut(s) 37, 85, 109, 600, 745
Eam1104I CTCTTC 3 cut(s) 33, 138, 779
EarI CTCTTC 3 cut(s) 33, 138, 779
Eco32I GATATC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 849
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 794
EcoRV GATATC 1 cut(s) 123
FaeI CATG 3 cut(s) 77, 202, 278
FaiI YATR 9 cut(s) 75, 167, 200, 276, 307, 389, 651, 752, 810
FaqI GGGAC 1 cut(s) 242
FatI CATG 3 cut(s) 73, 198, 274
Fnu4HI GCNGC 2 cut(s) 246, 405
FokI GGATG 3 cut(s) 56, 247, 681
Fsp4HI GCNGC 2 cut(s) 246, 405
GlaI GCGC 1 cut(s) 664
GluI GCNGC 2 cut(s) 246, 405
HapII CCGG 2 cut(s) 444, 666
HgaI GACGC 2 cut(s) 162, 201
HhaI GCGC 1 cut(s) 665
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 3 cut(s) 77, 202, 278
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HinfI GANTC 5 cut(s) 67, 77, 100, 629, 820
HpaII CCGG 2 cut(s) 444, 666
HphI GGTGA 1 cut(s) 610
Hpy188I TCNGA 7 cut(s) 82, 114, 127, 234, 382, 634, 714
Hpy188III TCNNGA 6 cut(s) 35, 41, 74, 89, 509, 604
Hpy99I CGWCG 3 cut(s) 118, 217, 872
HpyAV CCTTC 3 cut(s) 193, 382, 605
HpyCH4III ACNGT 3 cut(s) 15, 657, 868
HpyCH4V TGCA 7 cut(s) 151, 269, 387, 456, 767, 835, 846
HpyF10VI GCNNNNNNNGC 7 cut(s) 137, 170, 179, 251, 384, 645, 798
HpyF3I CTNAG 1 cut(s) 379
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 3 cut(s) 77, 202, 278
HspAI GCGC 1 cut(s) 663
Kzo9I GATC 5 cut(s) 37, 85, 109, 600, 745
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 4 cut(s) 114, 118, 514, 705
MalI GATC 5 cut(s) 39, 87, 111, 602, 747
MboI GATC 5 cut(s) 37, 85, 109, 600, 745
MboII GAAGA 9 cut(s) 20, 23, 104, 155, 168, 755, 787, 796, 829
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 3 cut(s) 367, 641, 794
MluCI AATT 4 cut(s) 470, 489, 500, 861
MlyI GAGTC 3 cut(s) 71, 638, 814
MmeI TCCRAC 1 cut(s) 137
MseI TTAA 1 cut(s) 720
MslI CAYNNNNRTG 1 cut(s) 807
MspI CCGG 2 cut(s) 444, 666
MspR9I CCNGG 2 cut(s) 444, 796
Mva1269I GAATGC 1 cut(s) 685
MvaI CCWGG 1 cut(s) 796
MvnI CGCG 2 cut(s) 212, 407
MwoI GCNNNNNNNGC 7 cut(s) 137, 170, 179, 251, 384, 645, 798
NciI CCSGG 1 cut(s) 444
NdeII GATC 5 cut(s) 37, 85, 109, 600, 745
NlaIII CATG 3 cut(s) 77, 202, 278
NlaIV GGNNCC 3 cut(s) 678, 791, 800
PagI TCATGA 1 cut(s) 73
PctI GAATGC 1 cut(s) 685
PfeI GAWTC 2 cut(s) 67, 100
PkrI GCNGC 2 cut(s) 247, 406
PleI GAGTC 3 cut(s) 71, 637, 814
PpsI GAGTC 3 cut(s) 71, 637, 814
Psp6I CCWGG 1 cut(s) 794
PspGI CCWGG 1 cut(s) 794
PspN4I GGNNCC 3 cut(s) 678, 791, 800
PspPI GGNCC 1 cut(s) 849
PsuI RGATCY 1 cut(s) 745
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 807
SaqAI TTAA 1 cut(s) 720
SatI GCNGC 2 cut(s) 246, 405
Sau3AI GATC 5 cut(s) 37, 85, 109, 600, 745
Sau96I GGNCC 1 cut(s) 849
SchI GAGTC 3 cut(s) 71, 638, 814
ScrFI CCNGG 2 cut(s) 444, 796
SduI GDGCHC 3 cut(s) 367, 641, 794
SfaNI GCATC 4 cut(s) 114, 118, 514, 705
SinI GGWCC 1 cut(s) 849
SmiMI CAYNNNNRTG 1 cut(s) 807
SmlI CTYRAG 1 cut(s) 822
SmoI CTYRAG 1 cut(s) 822
Sse9I AATT 4 cut(s) 470, 489, 500, 861
SsiI CCGC 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 442, 794
TaaI ACNGT 3 cut(s) 15, 657, 868
TaqI TCGA 3 cut(s) 108, 510, 603
TasI AATT 4 cut(s) 470, 489, 500, 861
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 2 cut(s) 67, 100
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TscAI CASTG 4 cut(s) 69, 271, 583, 627
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 4 cut(s) 59, 175, 291, 369
TspGWI ACGGA 1 cut(s) 669
TspRI CASTG 4 cut(s) 69, 271, 583, 627
VpaK11BI GGWCC 1 cut(s) 849
XapI RAATTY 1 cut(s) 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.