AT3G16350
MYB Family

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010813
Physical Location & Seq
Forward (+)
5547492 .. 5549862
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16350.1

Sequence Viewer

Length: 1164 bp
ATGACTCGTCGGTGTTCGCATTGTAGCAACAATGGGCACAATTCACGCACGTGTCCAACGCGTGGTGGTGGCACGTGCGGTGGAAGTGGCGGAGGAGGAGGAGGTGGTGGTGGAGGAGGGTCTGGTTCCTCCTCCGCCGTGAAGTTATTTGGTGTGAGGTTAACGGATGGCTCGATTATTAAAAAGAGTGCGAGTATGGGTAATCTCTCGGCATTGGCTGTTGCGGCGGCGGCGGCAACGCACCACCGTTTATCTCCGTCGTCTCCTCTGGCGACGTCAAATCTTAATGATTCGCCGTTATCGGATCATGCCCGATACTCTAATTTGCATCATAATGAAGGGTATTTATCTGATGATCCTGCTCATGGTTCTGGGTCTAGTCACCGTCGTGGTGAGAGGAAGAGAGGTGTTCCTTGGACTGAAGAGGAACATAGACTATTCTTAGTCGGTCTTCAGAAACTCGGGAAAGGAGATTGGCGCGGTATTTCGAGAAACTATGTAACGTCAAGAACTCCTACACAAGTGGCTAGTCATGCTCAAAAGTATTTTATTCGACATACTAGTTCAAGCCGCAGGAAAAGACGGTCTAGCCTCTTCGACATGGTTACAGATGAGATGGTAACCGATTCATCGCCAACACAGGAAGAGCAGACCTTAAACGGTTCCTCTCCAAGCAAGGAACCTGAAAAGAAAAGCTACCTTCCTTCACTTGAGCTCTCACTCAATAATACCACAGAAGCTGAAGAGGTCGTAGCCACGGCGCCACGACAGGAAAAATCTCAAGAAGCTATAGAACCATCAAATGGTGTTTCACCAATGCTAGTCCCGGGTGGCTTCTTTCCTCCTTGTTTTCCAGTGACTTACACGATTTGGCTCCCTGCGTCACTTCACGGAACAGAACATGCCTTAAACGCTGAGACTTCTTCTCAGCAGCATCAGGTCCTAAAACCAAAACCTGGATTTGCTAAAGAACGTGTGAACATGGACGAGTTGGTCGGTATGTCTCAGCTTAGCATAGGAATGGCGACAAGACACGAAACCGAAACTTCCCCTTCCCCGCTATCTTTGAGACTAGAGCCCTCAAGGCCATCAGCGTTTCACTCGAATGGCTCGGTTAATGGTGCAGATTTGAGTAAAGGCAACAGCGCGATTCAGGCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

387

Amino Acids

41.19

Weight (kDa)

9.07

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 137 - 183 1.5e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 992
AatII GACGTC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 760
AccB7I CCANNNNNTGG 3 cut(s) 62, 803, 956
AccII CGCG 3 cut(s) 61, 480, 1148
AclWI GGATC 2 cut(s) 312, 350
AcuI CTGAAG 3 cut(s) 437, 441, 762
AcvI CACGTG 2 cut(s) 51, 75
AcyI GRCGYC 2 cut(s) 275, 761
AfiI CCNNNNNNNGG 4 cut(s) 62, 365, 803, 956
AflIII ACRYGT 3 cut(s) 50, 59, 973
AgsI TTSAA 1 cut(s) 567
AhlI ACTAGT 1 cut(s) 560
AjnI CCWGG 1 cut(s) 955
AleI CACNNNNGTG 2 cut(s) 49, 387
AluBI AGCT 5 cut(s) 696, 715, 740, 788, 1009
AluI AGCT 5 cut(s) 696, 715, 740, 788, 1009
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 4 cut(s) 267, 911, 1008, 1063
AlwI GGATC 2 cut(s) 312, 350
AlwNI CAGNNNCTG 1 cut(s) 740
Ama87I CYCGRG 2 cut(s) 461, 826
AoxI GGCC 1 cut(s) 1085
ApeKI GCWGC 1 cut(s) 931
AspLEI GCGC 3 cut(s) 480, 763, 1148
AspS9I GGNCC 1 cut(s) 940
AsuC2I CCSGG 2 cut(s) 827, 828
AsuHPI GGTGA 3 cut(s) 374, 404, 804
AvaI CYCGRG 2 cut(s) 461, 826
AvaII GGWCC 1 cut(s) 940
BaeGI GKGCMC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 760
BanII GRGCYC 2 cut(s) 717, 1080
BbrPI CACGTG 2 cut(s) 51, 75
BbsI GAAGAC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 717
BbvI GCAGC 1 cut(s) 943
BccI CCATC 4 cut(s) 161, 610, 805, 1096
BceAI ACGGC 3 cut(s) 122, 280, 774
BciT130I CCWGG 1 cut(s) 957
BcnI CCSGG 2 cut(s) 827, 828
BcoDI GTCTC 4 cut(s) 267, 911, 1008, 1063
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 6 cut(s) 378, 528, 561, 588, 821, 1073
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 1 cut(s) 764
BglI GCCNNNNNGGC 1 cut(s) 1084
BisI GCNGC 6 cut(s) 225, 228, 231, 234, 571, 932
BlpI GCTNAGC 1 cut(s) 1010
BlsI GCNGC 6 cut(s) 226, 229, 232, 235, 572, 933
Bme1390I CCNGG 3 cut(s) 827, 828, 957
Bme18I GGWCC 1 cut(s) 940
BmeT110I CYCGRG 2 cut(s) 461, 826
BmgT120I GGNCC 1 cut(s) 940
BmiI GGNNCC 5 cut(s) 127, 664, 681, 762, 875
BmrFI CCNGG 3 cut(s) 827, 828, 957
BmsI GCATC 2 cut(s) 337, 943
BpiI GAAGAC 1 cut(s) 443
Bpu1102I GCTNAGC 1 cut(s) 1010
BpuEI CTTGAG 3 cut(s) 731, 765, 1066
BpuMI CCSGG 2 cut(s) 827, 828
BsaAI YACGTR 2 cut(s) 51, 75
BsaHI GRCGYC 2 cut(s) 275, 761
BsaJI CCNNGG 3 cut(s) 413, 756, 826
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 365, 803, 956
Bse1I ACTGG 1 cut(s) 854
BseBI CCWGG 1 cut(s) 957
BseDI CCNNGG 3 cut(s) 413, 756, 826
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 4 cut(s) 62, 365, 803, 956
BseMII CTCAG 3 cut(s) 906, 941, 1019
BseNI ACTGG 1 cut(s) 854
BseRI GAGGAG 6 cut(s) 108, 111, 114, 121, 129, 255
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 1 cut(s) 943
BsgI GTGCAG 1 cut(s) 1143
Bsh1236I CGCG 3 cut(s) 61, 480, 1148
BshFI GGCC 1 cut(s) 1087
BshNI GGYRCC 1 cut(s) 760
BsiHKAI GWGCWC 1 cut(s) 717
BsiHKCI CYCGRG 2 cut(s) 461, 826
BsiSI CCGG 1 cut(s) 827
BslFI GGGAC 1 cut(s) 809
BslI CCNNNNNNNGG 4 cut(s) 62, 365, 803, 956
BsmAI GTCTC 4 cut(s) 267, 911, 1008, 1063
BsmBI CGTCTC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 809
BsnI GGCC 1 cut(s) 1087
BsoBI CYCGRG 2 cut(s) 461, 826
Bsp1286I GDGCHC 3 cut(s) 39, 717, 1080
Bsp143I GATC 2 cut(s) 304, 355
Bsp1720I GCTNAGC 1 cut(s) 1010
BspANI GGCC 1 cut(s) 1087
BspCNI CTCAG 3 cut(s) 907, 940, 1018
BspFNI CGCG 3 cut(s) 61, 480, 1148
BspLI GGNNCC 5 cut(s) 127, 664, 681, 762, 875
BspPI GGATC 2 cut(s) 312, 350
BspQI GCTCTTC 1 cut(s) 639
BspT107I GGYRCC 1 cut(s) 760
BsrI ACTGG 1 cut(s) 854
BssECI CCNNGG 3 cut(s) 413, 756, 826
BssMI GATC 2 cut(s) 304, 355
BssNI GRCGYC 2 cut(s) 275, 761
BssT1I CCWWGG 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 957
Bst4CI ACNGT 4 cut(s) 248, 386, 585, 662
Bst6I CTCTTC 5 cut(s) 395, 417, 599, 639, 738
BstACI GRCGYC 2 cut(s) 275, 761
BstBAI YACGTR 2 cut(s) 51, 75
BstDEI CTNAG 5 cut(s) 442, 915, 927, 1005, 1010
BstDSI CCRYGG 1 cut(s) 756
BstEII GGTNACC 1 cut(s) 619
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 3 cut(s) 61, 480, 1148
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 3 cut(s) 480, 763, 1148
BstKTI GATC 2 cut(s) 307, 358
BstMAI GTCTC 4 cut(s) 267, 911, 1008, 1063
BstMBI GATC 2 cut(s) 304, 355
BstMWI GCNNNNNNNGC 7 cut(s) 224, 230, 233, 533, 911, 1084, 1154
BstNI CCWGG 1 cut(s) 957
BstNSI RCATGY 1 cut(s) 905
BstPI GGTNACC 1 cut(s) 619
BstSCI CCNGG 3 cut(s) 825, 826, 955
BstSFI CTRYAG 1 cut(s) 789
BstSLI GKGCMC 1 cut(s) 39
BstUI CGCG 3 cut(s) 61, 480, 1148
BstV1I GCAGC 1 cut(s) 943
BstV2I GAAGAC 1 cut(s) 443
BsuRI GGCC 1 cut(s) 1087
BtgI CCRYGG 1 cut(s) 756
BtgZI GCGATG 1 cut(s) 615
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 861
CaiI CAGNNNCTG 1 cut(s) 740
CfoI GCGC 3 cut(s) 480, 763, 1148
Cfr13I GGNCC 1 cut(s) 940
Cfr9I CCCGGG 1 cut(s) 826
CseI GACGC 1 cut(s) 870
CviAII CATG 6 cut(s) 308, 365, 533, 601, 902, 982
DdeI CTNAG 5 cut(s) 442, 915, 927, 1005, 1010
DinI GGCGCC 1 cut(s) 762
DpnI GATC 2 cut(s) 306, 357
DpnII GATC 2 cut(s) 304, 355
DrdI GACNNNNNNGTC 1 cut(s) 992
DseDI GACNNNNNNGTC 1 cut(s) 992
Eam1104I CTCTTC 5 cut(s) 395, 417, 599, 639, 738
EarI CTCTTC 5 cut(s) 395, 417, 599, 639, 738
EciI GGCGGA 2 cut(s) 105, 124
Ecl136II GAGCTC 1 cut(s) 715
Eco130I CCWWGG 1 cut(s) 413
Eco24I GRGCYC 2 cut(s) 717, 1080
Eco47I GGWCC 1 cut(s) 940
Eco53kI GAGCTC 1 cut(s) 715
Eco57I CTGAAG 3 cut(s) 437, 441, 762
Eco72I CACGTG 2 cut(s) 51, 75
Eco88I CYCGRG 2 cut(s) 461, 826
Eco91I GGTNACC 1 cut(s) 619
EcoICRI GAGCTC 1 cut(s) 715
EcoO109I RGGNCCY 1 cut(s) 940
EcoO65I GGTNACC 1 cut(s) 619
EcoRII CCWGG 1 cut(s) 955
EcoT14I CCWWGG 1 cut(s) 413
EcoT38I GRGCYC 2 cut(s) 717, 1080
EgeI GGCGCC 1 cut(s) 762
EheI GGCGCC 1 cut(s) 762
ErhI CCWWGG 1 cut(s) 413
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 6 cut(s) 311, 368, 536, 604, 905, 985
FaqI GGGAC 1 cut(s) 809
FatI CATG 6 cut(s) 307, 364, 532, 600, 901, 981
FauI CCCGC 1 cut(s) 1065
Fnu4HI GCNGC 6 cut(s) 225, 228, 231, 234, 571, 932
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 2 cut(s) 717, 1080
Fsp4HI GCNGC 6 cut(s) 225, 228, 231, 234, 571, 932
FspBI CTAG 6 cut(s) 378, 528, 561, 588, 821, 1073
GlaI GCGC 3 cut(s) 479, 762, 1147
GluI GCNGC 6 cut(s) 225, 228, 231, 234, 571, 932
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 1 cut(s) 1087
HapII CCGG 1 cut(s) 827
HgaI GACGC 1 cut(s) 870
HhaI GCGC 3 cut(s) 480, 763, 1148
Hin1I GRCGYC 2 cut(s) 275, 761
Hin1II CATG 6 cut(s) 311, 368, 536, 604, 905, 985
Hin6I GCGC 3 cut(s) 478, 761, 1146
HinP1I GCGC 3 cut(s) 478, 761, 1146
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 4 cut(s) 4, 290, 626, 1150
HpaI GTTAAC 1 cut(s) 162
HpaII CCGG 1 cut(s) 827
HphI GGTGA 3 cut(s) 374, 404, 804
Hpy166II GTNNAC 2 cut(s) 162, 979
Hpy188I TCNGA 3 cut(s) 304, 352, 456
Hpy188III TCNNGA 4 cut(s) 463, 489, 507, 782
Hpy8I GTNNAC 2 cut(s) 162, 979
Hpy99I CGWCG 4 cut(s) 12, 262, 277, 390
HpyAV CCTTC 4 cut(s) 332, 710, 714, 1062
HpyCH4III ACNGT 4 cut(s) 248, 386, 585, 662
HpyCH4IV ACGT 5 cut(s) 50, 74, 275, 503, 973
HpyCH4V TGCA 2 cut(s) 328, 1124
HpyF10VI GCNNNNNNNGC 7 cut(s) 224, 230, 233, 533, 911, 1084, 1154
HpyF3I CTNAG 5 cut(s) 442, 915, 927, 1005, 1010
HpySE526I ACGT 5 cut(s) 50, 74, 275, 503, 973
Hsp92I GRCGYC 2 cut(s) 275, 761
Hsp92II CATG 6 cut(s) 311, 368, 536, 604, 905, 985
HspAI GCGC 3 cut(s) 478, 761, 1146
KasI GGCGCC 1 cut(s) 760
KspAI GTTAAC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 304, 355
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 1 cut(s) 879
Lsp1109I GCAGC 1 cut(s) 943
LweI GCATC 2 cut(s) 337, 943
MaeI CTAG 6 cut(s) 378, 528, 561, 588, 821, 1073
MaeII ACGT 5 cut(s) 50, 74, 275, 503, 973
MaeIII GTNAC 6 cut(s) 380, 499, 604, 619, 856, 882
MalI GATC 2 cut(s) 306, 357
MboI GATC 2 cut(s) 304, 355
MboII GAAGA 7 cut(s) 412, 434, 443, 586, 656, 755, 915
MhlI GDGCHC 3 cut(s) 39, 717, 1080
MluCI AATT 2 cut(s) 40, 322
MluI ACGCGT 1 cut(s) 59
Mly113I GGCGCC 1 cut(s) 761
MmeI TCCRAC 1 cut(s) 80
MseI TTAA 6 cut(s) 161, 180, 285, 656, 908, 1116
MslI CAYNNNNRTG 5 cut(s) 49, 333, 387, 1019, 1104
MspI CCGG 1 cut(s) 827
MspR9I CCNGG 3 cut(s) 827, 828, 957
MvaI CCWGG 1 cut(s) 957
MvnI CGCG 3 cut(s) 61, 480, 1148
MwoI GCNNNNNNNGC 7 cut(s) 224, 230, 233, 533, 911, 1084, 1154
NarI GGCGCC 1 cut(s) 761
NciI CCSGG 2 cut(s) 827, 828
NdeII GATC 2 cut(s) 304, 355
NlaIII CATG 6 cut(s) 311, 368, 536, 604, 905, 985
NlaIV GGNNCC 5 cut(s) 127, 664, 681, 762, 875
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 3 cut(s) 380, 856, 882
NspI RCATGY 1 cut(s) 905
OliI CACNNNNGTG 2 cut(s) 49, 387
PciSI GCTCTTC 1 cut(s) 639
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PfeI GAWTC 3 cut(s) 290, 626, 1150
PflMI CCANNNNNTGG 3 cut(s) 62, 803, 956
PkrI GCNGC 6 cut(s) 226, 229, 232, 235, 572, 933
PluTI GGCGCC 1 cut(s) 764
PmaCI CACGTG 2 cut(s) 51, 75
PmlI CACGTG 2 cut(s) 51, 75
Ppu21I YACGTR 2 cut(s) 51, 75
PpuMI RGGWCCY 1 cut(s) 940
Psp124BI GAGCTC 1 cut(s) 717
Psp5II RGGWCCY 1 cut(s) 940
Psp6I CCWGG 1 cut(s) 955
PspCI CACGTG 2 cut(s) 51, 75
PspEI GGTNACC 1 cut(s) 619
PspGI CCWGG 1 cut(s) 955
PspN4I GGNNCC 5 cut(s) 127, 664, 681, 762, 875
PspPI GGNCC 1 cut(s) 940
PspPPI RGGWCCY 1 cut(s) 940
PstNI CAGNNNCTG 1 cut(s) 740
RseI CAYNNNNRTG 5 cut(s) 49, 333, 387, 1019, 1104
SacI GAGCTC 1 cut(s) 717
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 6 cut(s) 161, 180, 285, 656, 908, 1116
SatI GCNGC 6 cut(s) 225, 228, 231, 234, 571, 932
Sau3AI GATC 2 cut(s) 304, 355
Sau96I GGNCC 1 cut(s) 940
ScrFI CCNGG 3 cut(s) 827, 828, 957
SduI GDGCHC 3 cut(s) 39, 717, 1080
SfaNI GCATC 2 cut(s) 337, 943
SfcI CTRYAG 1 cut(s) 789
SfoI GGCGCC 1 cut(s) 762
SinI GGWCC 1 cut(s) 940
SmaI CCCGGG 1 cut(s) 828
SmiMI CAYNNNNRTG 5 cut(s) 49, 333, 387, 1019, 1104
SmlI CTYRAG 3 cut(s) 710, 780, 1081
SmoI CTYRAG 3 cut(s) 710, 780, 1081
SpeI ACTAGT 1 cut(s) 560
Sse9I AATT 2 cut(s) 40, 322
SspDI GGCGCC 1 cut(s) 760
SspMI CTAG 6 cut(s) 378, 528, 561, 588, 821, 1073
SstI GAGCTC 1 cut(s) 717
StyD4I CCNGG 3 cut(s) 825, 826, 955
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 4 cut(s) 248, 386, 585, 662
TaiI ACGT 5 cut(s) 53, 77, 278, 506, 976
TaqI TCGA 5 cut(s) 173, 488, 553, 597, 1103
TaqII GACCGA 1 cut(s) 437
TasI AATT 2 cut(s) 40, 322
TauI GCSGC 5 cut(s) 227, 230, 233, 236, 573
TfiI GAWTC 3 cut(s) 290, 626, 1150
Tru1I TTAA 6 cut(s) 161, 180, 285, 656, 908, 1116
Tru9I TTAA 6 cut(s) 161, 180, 285, 656, 908, 1116
TscAI CASTG 1 cut(s) 861
TseFI GTSAC 3 cut(s) 380, 856, 882
TseI GCWGC 1 cut(s) 931
Tsp45I GTSAC 3 cut(s) 380, 856, 882
TspDTI ATGAA 2 cut(s) 351, 618
TspGWI ACGGA 3 cut(s) 179, 246, 906
TspMI CCCGGG 1 cut(s) 826
TspRI CASTG 1 cut(s) 861
Van91I CCANNNNNTGG 3 cut(s) 62, 803, 956
VpaK11BI GGWCC 1 cut(s) 940
XceI RCATGY 1 cut(s) 905
XmaI CCCGGG 1 cut(s) 826
XspI CTAG 6 cut(s) 378, 528, 561, 588, 821, 1073
ZraI GACGTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.