FvH4_6g32340
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010813
Physical Location & Seq
Forward (+)
25389171 .. 25392460
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32340.t4

Sequence Viewer

Length: 1086 bp
ATGACTCGGCGCTGCTCCCACTGCAGCAACAACGGCCACAACTCCCGCACGTGCCCCTCGCGTGGCGGAGGCGCCTCCTCTTCCTGCTCCTCCGGCAGCGGCGGCGTGAGGCTCTTCGGCGTTAAGCTGACGGATGGCTCCATCATCAAGAAGAGCGCTAGTATGGGGAACCTATCCACCATGGCCTCGCACTACCAATCCTCGTCTCCCAACCCGGACTCTCCGCCGCTCCACGACCCGGTTCACGTCCGCGACGGTTACTTGTCCGACGACCCGGCCCACGCCTCATCCTCCGCCAATCGTCGTGGAGATCGTAAAAAAGGAGTCCCATGGACAGAAGAGGAGCATCGAATGTTCTTAATTGGTCTTCAGAAATTGGGGAAAGGAGACTGGCGTGGAATAGCGCGAAATTATGTAATCACAAGGACTCCTACACAGGTGGCAAGCCATGCCCAGAAGTATTTTATCCGGCAGAGCAATTCTAATAGAAGAAAGAGACGCTCGAGTCTCTTTGACATGGCCCCTGACATGGCCATGGATTCACCTCACATGCCAGAAGAACAAGCTTTGCTGCCTTCTTGTCAGGAGGAAAGAGAATCTGAAGATTCAAATGCACTACCTTCATTAAATCTTTCCCTTGGTTCAGAATGCAGCAGACCTATGGAAAGTACACAAGAAGACAACATAGTTATTAAACCCGATAATCAGTCCGTAATGGGATTCAATGGGTACCCAAATGGTTACCCACCAGTTATTCCTGGTTTCATCCCAGCGTATGTGCCTTTTCCTTTTCCTGTATGGCCAAGTGCGGGTCCTCTGATAATAGAAAATGGAGGCGATGCTTCTCATTACCCGCAGGTCTTAAAGCCGGTTCCTATCCTTCCCAAGGAACCTGTTAATGTTGATGCTCTAGTGGGTATGTCTCAGCTCAATCTAGGAGAGGCCGAGACTCTCCAAAGCAATCCTTCCTCTCTCTCTATGACATCATTAGGGGAGCCATCAAGGCAGTCGGCATTTCACCCAAATGCTCCGGCCAGTGAACCAGACTTGAGCAAGGGCAAGACCAGTGTCATCCAAGCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

362

Amino Acids

39.0

Weight (kDa)

7.17

Isoelectric Point (pI)

71.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 109 - 155 7.1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 504
Acc36I ACCTGC 1 cut(s) 847
Acc65I GGTACC 1 cut(s) 729
AccB1I GGYRCC 2 cut(s) 71, 729
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 3 cut(s) 61, 252, 406
AcoI YGGCCR 4 cut(s) 34, 531, 800, 1032
AcuI CTGAAG 2 cut(s) 353, 621
AcvI CACGTG 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 670, 731
AfeI AGCGCT 1 cut(s) 157
AfiI CCNNNNNNNGG 5 cut(s) 62, 238, 529, 809, 886
AgsI TTSAA 2 cut(s) 609, 724
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 757
AluBI AGCT 3 cut(s) 127, 566, 928
AluI AGCT 3 cut(s) 127, 566, 928
Alw26I GTCTC 6 cut(s) 210, 381, 490, 512, 927, 941
Ama87I CYCGRG 1 cut(s) 502
Aor51HI AGCGCT 1 cut(s) 157
AoxI GGCC 8 cut(s) 34, 183, 276, 519, 531, 800, 942, 1032
ApeKI GCWGC 5 cut(s) 12, 24, 96, 571, 651
Asp718I GGTACC 1 cut(s) 729
AspLEI GCGC 4 cut(s) 12, 74, 158, 406
AspS9I GGNCC 3 cut(s) 277, 520, 812
AsuC2I CCSGG 3 cut(s) 215, 239, 275
AsuHPI GGTGA 2 cut(s) 534, 1010
AvaI CYCGRG 1 cut(s) 502
AvaII GGWCC 1 cut(s) 812
BaeGI GKGCMC 1 cut(s) 56
BalI TGGCCA 2 cut(s) 533, 802
BanI GGYRCC 2 cut(s) 71, 729
BbrPI CACGTG 1 cut(s) 51
BbsI GAAGAC 2 cut(s) 359, 684
BbvI GCAGC 4 cut(s) 36, 108, 558, 663
BccI CCATC 3 cut(s) 128, 149, 1006
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 759
BcnI CCSGG 3 cut(s) 215, 239, 275
BcoDI GTCTC 6 cut(s) 210, 381, 490, 512, 927, 941
BfaI CTAG 3 cut(s) 159, 911, 935
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 3 cut(s) 13, 75, 159
BfuAI ACCTGC 1 cut(s) 847
BglI GCCNNNNNGGC 1 cut(s) 1003
BisI GCNGC 8 cut(s) 13, 25, 97, 100, 103, 227, 572, 652
BlsI GCNGC 8 cut(s) 14, 26, 98, 101, 104, 228, 573, 653
Bme1390I CCNGG 4 cut(s) 215, 239, 275, 759
Bme18I GGWCC 1 cut(s) 812
BmeT110I CYCGRG 1 cut(s) 502
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 3 cut(s) 277, 520, 812
BmiI GGNNCC 9 cut(s) 73, 139, 170, 522, 731, 813, 873, 891, 996
BmrFI CCNGG 4 cut(s) 215, 239, 275, 759
BmsI GCATC 3 cut(s) 355, 829, 895
BoxI GACNNNNGTC 1 cut(s) 1067
BpiI GAAGAC 2 cut(s) 359, 684
BpuEI CTTGAG 1 cut(s) 1069
BpuMI CCSGG 3 cut(s) 215, 239, 275
BsaAI YACGTR 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 5 cut(s) 180, 329, 534, 637, 885
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 238, 529, 809, 886
Bse118I RCCGGY 1 cut(s) 868
Bse1I ACTGG 4 cut(s) 395, 749, 1035, 1065
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 5 cut(s) 180, 329, 534, 637, 885
BseGI GGATG 4 cut(s) 139, 287, 765, 1071
BseLI CCNNNNNNNGG 5 cut(s) 62, 238, 529, 809, 886
BseMII CTCAG 1 cut(s) 938
BseNI ACTGG 4 cut(s) 395, 749, 1035, 1065
BseRI GAGGAG 3 cut(s) 67, 79, 356
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 4 cut(s) 36, 108, 558, 663
BseYI CCCAGC 1 cut(s) 769
Bsh1236I CGCG 3 cut(s) 61, 252, 406
BshFI GGCC 8 cut(s) 36, 185, 278, 521, 533, 802, 944, 1034
BshNI GGYRCC 2 cut(s) 71, 729
BsiHKCI CYCGRG 1 cut(s) 502
BsiSI CCGG 7 cut(s) 93, 215, 239, 275, 469, 869, 1031
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 5 cut(s) 62, 238, 529, 809, 886
BsmAI GTCTC 6 cut(s) 210, 381, 490, 512, 927, 941
BsmBI CGTCTC 2 cut(s) 210, 490
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 653
BsnI GGCC 8 cut(s) 36, 185, 278, 521, 533, 802, 944, 1034
BsoBI CYCGRG 1 cut(s) 502
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 310
Bsp19I CCATGG 3 cut(s) 180, 329, 534
BspANI GGCC 8 cut(s) 36, 185, 278, 521, 533, 802, 944, 1034
BspCNI CTCAG 1 cut(s) 937
BspFNI CGCG 3 cut(s) 61, 252, 406
BspLI GGNNCC 9 cut(s) 73, 139, 170, 522, 731, 813, 873, 891, 996
BspMAI CTGCAG 1 cut(s) 26
BspMI ACCTGC 1 cut(s) 847
BspQI GCTCTTC 2 cut(s) 119, 146
BspT107I GGYRCC 2 cut(s) 71, 729
BsrBI CCGCTC 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 868
BsrI ACTGG 4 cut(s) 395, 749, 1035, 1065
BssAI RCCGGY 1 cut(s) 868
BssECI CCNNGG 5 cut(s) 180, 329, 534, 637, 885
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 5 cut(s) 180, 329, 534, 637, 885
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 4 cut(s) 85, 119, 146, 333
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 1 cut(s) 924
BstDSI CCRYGG 3 cut(s) 180, 329, 534
BstEII GGTNACC 1 cut(s) 740
BstENI CCTNNNNNAGG 1 cut(s) 884
BstF5I GGATG 4 cut(s) 139, 287, 765, 1071
BstFNI CGCG 3 cut(s) 61, 252, 406
BstH2I RGCGCY 3 cut(s) 13, 75, 159
BstHHI GCGC 4 cut(s) 12, 74, 158, 406
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 6 cut(s) 210, 381, 490, 512, 927, 941
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 6 cut(s) 21, 33, 93, 102, 449, 1003
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 553
BstPAI GACNNNNGTC 1 cut(s) 1067
BstPI GGTNACC 1 cut(s) 740
BstSCI CCNGG 4 cut(s) 213, 237, 273, 757
BstSFI CTRYAG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 3 cut(s) 61, 252, 406
BstV1I GCAGC 4 cut(s) 36, 108, 558, 663
BstV2I GAAGAC 2 cut(s) 359, 684
BsuRI GGCC 8 cut(s) 36, 185, 278, 521, 533, 802, 944, 1034
BtgI CCRYGG 3 cut(s) 180, 329, 534
BtgZI GCGATG 1 cut(s) 852
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 4 cut(s) 139, 287, 765, 1071
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 3 cut(s) 19, 1042, 1072
BveI ACCTGC 1 cut(s) 847
Cac8I GCNNGC 1 cut(s) 445
CfoI GCGC 4 cut(s) 12, 74, 158, 406
Cfr10I RCCGGY 1 cut(s) 868
Cfr13I GGNCC 3 cut(s) 277, 520, 812
CseI GACGC 1 cut(s) 507
Csp6I GTAC 2 cut(s) 669, 730
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 7 cut(s) 181, 330, 449, 517, 529, 535, 550
CviQI GTAC 2 cut(s) 669, 730
DdeI CTNAG 1 cut(s) 924
DinI GGCGCC 1 cut(s) 73
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
DrdI GACNNNNNNGTC 1 cut(s) 504
DseDI GACNNNNNNGTC 1 cut(s) 504
EaeI YGGCCR 4 cut(s) 34, 531, 800, 1032
Eam1104I CTCTTC 4 cut(s) 85, 119, 146, 333
EarI CTCTTC 4 cut(s) 85, 119, 146, 333
EciI GGCGGA 3 cut(s) 81, 213, 283
Eco130I CCWWGG 5 cut(s) 180, 329, 534, 637, 885
Eco47I GGWCC 1 cut(s) 812
Eco47III AGCGCT 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 353, 621
Eco72I CACGTG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 502
Eco91I GGTNACC 1 cut(s) 740
EcoNI CCTNNNNNAGG 1 cut(s) 884
EcoO109I RGGNCCY 1 cut(s) 812
EcoO65I GGTNACC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 757
EcoT14I CCWWGG 5 cut(s) 180, 329, 534, 637, 885
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 5 cut(s) 180, 329, 534, 637, 885
Esp3I CGTCTC 2 cut(s) 210, 490
FaeI CATG 7 cut(s) 184, 333, 452, 520, 532, 538, 553
FalI AAGNNNNNCTT 2 cut(s) 949, 981
FaqI GGGAC 1 cut(s) 311
FatI CATG 7 cut(s) 180, 329, 448, 516, 528, 534, 549
FauI CCCGC 3 cut(s) 53, 802, 861
Fnu4HI GCNGC 8 cut(s) 13, 25, 97, 100, 103, 227, 572, 652
FokI GGATG 4 cut(s) 146, 274, 752, 1058
Fsp4HI GCNGC 8 cut(s) 13, 25, 97, 100, 103, 227, 572, 652
FspBI CTAG 3 cut(s) 159, 911, 935
GlaI GCGC 4 cut(s) 11, 73, 157, 405
GluI GCNGC 8 cut(s) 13, 25, 97, 100, 103, 227, 572, 652
GsaI CCCAGC 1 cut(s) 773
HaeII RGCGCY 3 cut(s) 13, 75, 159
HaeIII GGCC 8 cut(s) 36, 185, 278, 521, 533, 802, 944, 1034
HapII CCGG 7 cut(s) 93, 215, 239, 275, 469, 869, 1031
HgaI GACGC 1 cut(s) 507
HhaI GCGC 4 cut(s) 12, 74, 158, 406
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 7 cut(s) 184, 333, 452, 520, 532, 538, 553
Hin6I GCGC 4 cut(s) 10, 72, 156, 404
HinP1I GCGC 4 cut(s) 10, 72, 156, 404
HindIII AAGCTT 1 cut(s) 564
HpaII CCGG 7 cut(s) 93, 215, 239, 275, 469, 869, 1031
HphI GGTGA 2 cut(s) 534, 1010
Hpy166II GTNNAC 3 cut(s) 244, 671, 1040
Hpy188I TCNGA 6 cut(s) 268, 372, 601, 646, 819, 1085
Hpy188III TCNNGA 2 cut(s) 148, 584
Hpy8I GTNNAC 3 cut(s) 244, 671, 1040
Hpy99I CGWCG 3 cut(s) 257, 272, 306
HpyAV CCTTC 4 cut(s) 585, 630, 890, 975
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 2 cut(s) 50, 246
HpyCH4V TGCA 3 cut(s) 24, 614, 651
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 33, 93, 102, 449, 1003
HpyF3I CTNAG 1 cut(s) 924
HpySE526I ACGT 2 cut(s) 50, 246
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 7 cut(s) 184, 333, 452, 520, 532, 538, 553
HspAI GCGC 4 cut(s) 10, 72, 156, 404
KasI GGCGCC 1 cut(s) 71
KpnI GGTACC 1 cut(s) 733
Kzo9I GATC 1 cut(s) 310
LguI GCTCTTC 2 cut(s) 119, 146
LmnI GCTCC 7 cut(s) 20, 92, 143, 234, 343, 994, 1033
Lsp1109I GCAGC 4 cut(s) 36, 108, 558, 663
LweI GCATC 3 cut(s) 355, 829, 895
MaeI CTAG 3 cut(s) 159, 911, 935
MaeII ACGT 2 cut(s) 50, 246
MaeIII GTNAC 2 cut(s) 257, 740
MalI GATC 1 cut(s) 312
MbiI CCGCTC 1 cut(s) 229
MboI GATC 1 cut(s) 310
MboII GAAGA 9 cut(s) 72, 106, 163, 350, 359, 501, 569, 614, 689
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 2 cut(s) 533, 802
MluCI AATT 4 cut(s) 360, 374, 409, 478
MluNI TGGCCA 2 cut(s) 533, 802
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 5 cut(s) 212, 333, 421, 514, 943
MmeI TCCRAC 1 cut(s) 291
Mox20I TGGCCA 2 cut(s) 533, 802
MscI TGGCCA 2 cut(s) 533, 802
MseI TTAA 6 cut(s) 123, 359, 626, 693, 863, 897
MslI CAYNNNNRTG 2 cut(s) 533, 1023
Msp20I TGGCCA 2 cut(s) 533, 802
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 7 cut(s) 93, 215, 239, 275, 469, 869, 1031
MspR9I CCNGG 4 cut(s) 215, 239, 275, 759
Mva1269I GAATGC 1 cut(s) 653
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 3 cut(s) 61, 252, 406
MwoI GCNNNNNNNGC 6 cut(s) 21, 33, 93, 102, 449, 1003
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 3 cut(s) 215, 239, 275
NcoI CCATGG 3 cut(s) 180, 329, 534
NdeII GATC 1 cut(s) 310
NlaIII CATG 7 cut(s) 184, 333, 452, 520, 532, 538, 553
NlaIV GGNNCC 9 cut(s) 73, 139, 170, 522, 731, 813, 873, 891, 996
NmeAIII GCCGAG 1 cut(s) 970
NspI RCATGY 1 cut(s) 553
PaeR7I CTCGAG 1 cut(s) 502
PciSI GCTCTTC 2 cut(s) 119, 146
PcsI WCGNNNNNNNCGW 1 cut(s) 310
PctI GAATGC 1 cut(s) 653
PfeI GAWTC 4 cut(s) 539, 596, 605, 720
PkrI GCNGC 8 cut(s) 14, 26, 98, 101, 104, 228, 573, 653
PleI GAGTC 5 cut(s) 212, 332, 421, 513, 943
PluTI GGCGCC 1 cut(s) 75
PmaCI CACGTG 1 cut(s) 51
PmlI CACGTG 1 cut(s) 51
PpsI GAGTC 5 cut(s) 212, 332, 421, 513, 943
Ppu21I YACGTR 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 812
PshAI GACNNNNGTC 1 cut(s) 1067
Psp5II RGGWCCY 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 757
PspCI CACGTG 1 cut(s) 51
PspEI GGTNACC 1 cut(s) 740
PspFI CCCAGC 1 cut(s) 769
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 9 cut(s) 73, 139, 170, 522, 731, 813, 873, 891, 996
PspPI GGNCC 3 cut(s) 277, 520, 812
PspPPI RGGWCCY 1 cut(s) 812
PspXI VCTCGAGB 1 cut(s) 502
PstI CTGCAG 1 cut(s) 26
RsaI GTAC 2 cut(s) 670, 731
RsaNI GTAC 2 cut(s) 669, 730
RseI CAYNNNNRTG 2 cut(s) 533, 1023
SapI GCTCTTC 2 cut(s) 119, 146
SaqAI TTAA 6 cut(s) 123, 359, 626, 693, 863, 897
SatI GCNGC 8 cut(s) 13, 25, 97, 100, 103, 227, 572, 652
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 3 cut(s) 277, 520, 812
SchI GAGTC 5 cut(s) 212, 333, 421, 514, 943
ScrFI CCNGG 4 cut(s) 215, 239, 275, 759
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 3 cut(s) 355, 829, 895
SfcI CTRYAG 1 cut(s) 22
SfoI GGCGCC 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 502
SinI GGWCC 1 cut(s) 812
SlaI CTCGAG 1 cut(s) 502
SmiMI CAYNNNNRTG 2 cut(s) 533, 1023
SmlI CTYRAG 2 cut(s) 502, 1048
SmoI CTYRAG 2 cut(s) 502, 1048
Sse9I AATT 4 cut(s) 360, 374, 409, 478
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 3 cut(s) 159, 911, 935
StyD4I CCNGG 4 cut(s) 213, 237, 273, 757
StyI CCWWGG 5 cut(s) 180, 329, 534, 637, 885
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 2 cut(s) 53, 249
TaqI TCGA 2 cut(s) 349, 503
TasI AATT 4 cut(s) 360, 374, 409, 478
TatI WGTACW 1 cut(s) 668
TauI GCSGC 3 cut(s) 102, 105, 229
TfiI GAWTC 4 cut(s) 539, 596, 605, 720
Tru1I TTAA 6 cut(s) 123, 359, 626, 693, 863, 897
Tru9I TTAA 6 cut(s) 123, 359, 626, 693, 863, 897
TscAI CASTG 3 cut(s) 26, 1042, 1072
TseI GCWGC 5 cut(s) 12, 24, 96, 571, 651
TspDTI ATGAA 2 cut(s) 612, 754
TspGWI ACGGA 2 cut(s) 146, 700
TspRI CASTG 3 cut(s) 26, 1042, 1072
VpaK11BI GGWCC 1 cut(s) 812
XagI CCTNNNNNAGG 1 cut(s) 884
XceI RCATGY 1 cut(s) 553
XhoI CTCGAG 1 cut(s) 502
XspI CTAG 3 cut(s) 159, 911, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.