Rh2CG399900
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010813
Physical Location & Seq
Forward (+)
54411621 .. 54414739
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG399900.1

Sequence Viewer

Length: 1104 bp
ATGACTCGGCGCTGCTCCCACTGCAGCAACAACGGCCACAACTCCCGCACGTGCCCCTCGCGTGGCGGAGGTGGTGGCTCCTCCTCCTGCTCTTCTGGAGGTGCCGGCGGCGGCGGCGTGAAGCTCTTCGGCGTTAGGCTGACGGATGGCTCCTTCATTAAGAAGAGCGCTAGCATGGGCAATTTGTCCACTATGGCCTCGCACTACCAATCCTCGTCTCCCAACCCGGACTCTCCTCCCGGATACGACCCGCCGCTCCACGACCCGGTTCATGTCCGCGACGGTTACTTGTCGGACGACCCGGCCCATGCCTCCTCCACCAATCGCCGTGGAGATCGTAAAAAAGGAGTTCCATGGACAGAAGAGGAGCATCGAATGTTCTTAATTGGTCTTCAAAAATTGGGGAAAGGAGACTGGCGCGGGATAGCGCGAAATTATGTAACTACTAGGACTCCTACTCAGGTGGCAAGCCATGCCCAGAAGTATTTTATCCGGCAGAGTAATTCTACCAGAAGAAAGAGACGCTCCAGTCTCTTTGACATGGCCCCTGACATGGCCATGGATCCACCTCACATGCCAGAAGAACAAGCTTTGCTGCCTTCTTGTCAGGAGGAAAGAGAATCTGAAGATTCAAAACCTTCATTAAATCTTTCCCTTGGTTCAGAATGCAGCAGACCTATGGAAAGCACACAAGAAGAAAAAGTGATTATAGAACCCGATAATCAGCCGGTAATGGGATTGAATGGGTACCCGAATGGTTACCCACCAGTTATTCCCGGCTTCATCCCAGCGTATTTGCCTTATCCTTATCCTGTATGGCCAAGTGCAGGTCCTCTGATAATAGAAAACGGAGGCGAGGCTTCTCATTATCCGAAGGTCTTAAAGCCGGTTCCTATGCTTCCCAAGGAACCTGTCAACGTTGATGCTTTAGTAGGTATGTCTCAGCTCAGTCTAGTAGAGGCCGAGAGTCTCCAAAGCAATCCTTCCCCTCTCTCTCTGACATCATTAGGAGAGCCGTCAAGGCAATCGGCATTTCACCCAAATGCTCCGGCCAGTGAACCAGACTTAAGCAAGGGCAAGACCAGTGCCATCCAAGCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

367

Amino Acids

39.57

Weight (kDa)

7.17

Isoelectric Point (pI)

70.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 117 - 163 5.5e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 528
Acc36I ACCTGC 1 cut(s) 818
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 2 cut(s) 101, 747
AccBSI CCGCTC 1 cut(s) 256
AccII CGCG 4 cut(s) 61, 279, 420, 430
AciI CCGC 9 cut(s) 46, 66, 108, 111, 114, 251, 254, 277, 420
AclI AACGTT 1 cut(s) 918
AclWI GGATC 2 cut(s) 557, 570
AcoI YGGCCR 4 cut(s) 34, 555, 818, 1050
AcuI CTGAAG 1 cut(s) 645
AcvI CACGTG 1 cut(s) 51
AfaI GTAC 1 cut(s) 749
AfeI AGCGCT 1 cut(s) 169
AfiI CCNNNNNNNGG 5 cut(s) 62, 265, 553, 734, 827
AflII CTTAAG 1 cut(s) 1066
AgsI TTSAA 3 cut(s) 395, 633, 742
AluBI AGCT 3 cut(s) 124, 590, 946
AluI AGCT 3 cut(s) 124, 590, 946
Alw26I GTCTC 6 cut(s) 222, 405, 514, 536, 945, 974
AlwI GGATC 2 cut(s) 557, 570
Aor51HI AGCGCT 1 cut(s) 169
AoxI GGCC 8 cut(s) 34, 195, 303, 543, 555, 818, 960, 1050
ApeKI GCWGC 4 cut(s) 12, 24, 595, 669
Asp700I GAANNNNTTC 1 cut(s) 125
Asp718I GGTACC 1 cut(s) 747
AspLEI GCGC 4 cut(s) 12, 170, 420, 430
AspS9I GGNCC 3 cut(s) 304, 544, 830
AsuC2I CCSGG 5 cut(s) 227, 240, 266, 302, 777
AsuHPI GGTGA 1 cut(s) 1028
AsuNHI GCTAGC 1 cut(s) 170
AvaII GGWCC 1 cut(s) 830
BaeGI GKGCMC 1 cut(s) 56
BalI TGGCCA 2 cut(s) 557, 820
BamHI GGATCC 1 cut(s) 562
BanI GGYRCC 2 cut(s) 101, 747
BbrPI CACGTG 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 383
BbvI GCAGC 3 cut(s) 36, 582, 681
BccI CCATC 2 cut(s) 140, 1097
BceAI ACGGC 3 cut(s) 49, 312, 1000
BciVI GTATCC 1 cut(s) 236
BcnI CCSGG 5 cut(s) 227, 240, 266, 302, 777
BcoDI GTCTC 6 cut(s) 222, 405, 514, 536, 945, 974
BfaI CTAG 3 cut(s) 171, 447, 953
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 2 cut(s) 13, 171
BfrI CTTAAG 1 cut(s) 1066
BfuAI ACCTGC 1 cut(s) 818
BfuI GTATCC 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 1021
BisI GCNGC 8 cut(s) 13, 25, 109, 112, 115, 254, 596, 670
BlsI GCNGC 8 cut(s) 14, 26, 110, 113, 116, 255, 597, 671
Bme1390I CCNGG 5 cut(s) 227, 240, 266, 302, 777
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 3 cut(s) 304, 544, 830
BmiI GGNNCC 8 cut(s) 79, 103, 151, 546, 564, 749, 891, 909
BmrFI CCNGG 5 cut(s) 227, 240, 266, 302, 777
BmsI GCATC 2 cut(s) 379, 913
BmtI GCTAGC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 383
BpmI CTGGAG 2 cut(s) 117, 511
BpuMI CCSGG 5 cut(s) 227, 240, 266, 302, 777
BsaAI YACGTR 1 cut(s) 51
BsaJI CCNNGG 5 cut(s) 328, 353, 558, 655, 903
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 265, 553, 734, 827
Bse118I RCCGGY 3 cut(s) 104, 727, 886
Bse1I ACTGG 5 cut(s) 419, 528, 767, 1053, 1083
BseDI CCNNGG 5 cut(s) 328, 353, 558, 655, 903
BseGI GGATG 3 cut(s) 151, 783, 1089
BseLI CCNNNNNNNGG 5 cut(s) 62, 265, 553, 734, 827
BseMII CTCAG 3 cut(s) 473, 956, 961
BseNI ACTGG 5 cut(s) 419, 528, 767, 1053, 1083
BseRI GAGGAG 5 cut(s) 70, 73, 225, 304, 380
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 3 cut(s) 36, 582, 681
BseYI CCCAGC 1 cut(s) 787
BsgI GTGCAG 1 cut(s) 846
Bsh1236I CGCG 4 cut(s) 61, 279, 420, 430
BshFI GGCC 8 cut(s) 36, 197, 305, 545, 557, 820, 962, 1052
BshNI GGYRCC 2 cut(s) 101, 747
BslI CCNNNNNNNGG 5 cut(s) 62, 265, 553, 734, 827
BsmAI GTCTC 6 cut(s) 222, 405, 514, 536, 945, 974
BsmBI CGTCTC 2 cut(s) 222, 514
BsmI GAATGC 1 cut(s) 671
BsnI GGCC 8 cut(s) 36, 197, 305, 545, 557, 820, 962, 1052
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 334, 562
Bsp19I CCATGG 2 cut(s) 353, 558
BspACI CCGC 9 cut(s) 46, 66, 108, 111, 114, 251, 254, 277, 420
BspANI GGCC 8 cut(s) 36, 197, 305, 545, 557, 820, 962, 1052
BspCNI CTCAG 3 cut(s) 472, 955, 960
BspFNI CGCG 4 cut(s) 61, 279, 420, 430
BspLI GGNNCC 8 cut(s) 79, 103, 151, 546, 564, 749, 891, 909
BspMAI CTGCAG 1 cut(s) 26
BspMI ACCTGC 1 cut(s) 818
BspOI GCTAGC 1 cut(s) 174
BspPI GGATC 2 cut(s) 557, 570
BspQI GCTCTTC 3 cut(s) 97, 131, 158
BspT107I GGYRCC 2 cut(s) 101, 747
BspTI CTTAAG 1 cut(s) 1066
BsrBI CCGCTC 1 cut(s) 256
BsrFI RCCGGY 3 cut(s) 104, 727, 886
BsrI ACTGG 5 cut(s) 419, 528, 767, 1053, 1083
BssAI RCCGGY 3 cut(s) 104, 727, 886
BssECI CCNNGG 5 cut(s) 328, 353, 558, 655, 903
BssMI GATC 2 cut(s) 334, 562
BssT1I CCWWGG 4 cut(s) 353, 558, 655, 903
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 4 cut(s) 97, 131, 158, 357
BstAFI CTTAAG 1 cut(s) 1066
BstAPI GCANNNNNTGC 1 cut(s) 473
BstBAI YACGTR 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 106, 172, 469
BstDEI CTNAG 3 cut(s) 459, 942, 947
BstDSI CCRYGG 3 cut(s) 328, 353, 558
BstEII GGTNACC 1 cut(s) 758
BstF5I GGATG 3 cut(s) 151, 783, 1089
BstFNI CGCG 4 cut(s) 61, 279, 420, 430
BstH2I RGCGCY 2 cut(s) 13, 171
BstHHI GCGC 4 cut(s) 12, 170, 420, 430
BstKTI GATC 2 cut(s) 337, 565
BstMAI GTCTC 6 cut(s) 222, 405, 514, 536, 945, 974
BstMBI GATC 2 cut(s) 334, 562
BstMWI GCNNNNNNNGC 6 cut(s) 21, 33, 114, 473, 1021, 1094
BstNSI RCATGY 1 cut(s) 577
BstPI GGTNACC 1 cut(s) 758
BstSCI CCNGG 5 cut(s) 225, 238, 264, 300, 775
BstSFI CTRYAG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 4 cut(s) 61, 279, 420, 430
BstV1I GCAGC 3 cut(s) 36, 582, 681
BstV2I GAAGAC 1 cut(s) 383
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 8 cut(s) 36, 197, 305, 545, 557, 820, 962, 1052
BtgI CCRYGG 3 cut(s) 328, 353, 558
BtsCI GGATG 3 cut(s) 151, 783, 1089
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 3 cut(s) 19, 1060, 1090
BveI ACCTGC 1 cut(s) 818
Cac8I GCNNGC 3 cut(s) 106, 172, 469
CfoI GCGC 4 cut(s) 12, 170, 420, 430
Cfr10I RCCGGY 3 cut(s) 104, 727, 886
Cfr13I GGNCC 3 cut(s) 304, 544, 830
CseI GACGC 1 cut(s) 531
Csp6I GTAC 1 cut(s) 748
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 9 cut(s) 175, 272, 308, 354, 473, 541, 553, 559, 574
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 3 cut(s) 459, 942, 947
DpnI GATC 2 cut(s) 336, 564
DpnII GATC 2 cut(s) 334, 562
DrdI GACNNNNNNGTC 1 cut(s) 528
DseDI GACNNNNNNGTC 1 cut(s) 528
EaeI YGGCCR 4 cut(s) 34, 555, 818, 1050
Eam1104I CTCTTC 4 cut(s) 97, 131, 158, 357
EarI CTCTTC 4 cut(s) 97, 131, 158, 357
EciI GGCGGA 1 cut(s) 81
Eco130I CCWWGG 4 cut(s) 353, 558, 655, 903
Eco47I GGWCC 1 cut(s) 830
Eco47III AGCGCT 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 645
Eco72I CACGTG 1 cut(s) 51
Eco91I GGTNACC 1 cut(s) 758
EcoO109I RGGNCCY 1 cut(s) 830
EcoO65I GGTNACC 1 cut(s) 758
EcoT14I CCWWGG 4 cut(s) 353, 558, 655, 903
ErhI CCWWGG 4 cut(s) 353, 558, 655, 903
Esp3I CGTCTC 2 cut(s) 222, 514
FaeI CATG 9 cut(s) 178, 275, 311, 357, 476, 544, 556, 562, 577
FalI AAGNNNNNCTT 2 cut(s) 967, 999
FatI CATG 9 cut(s) 174, 271, 307, 353, 472, 540, 552, 558, 573
FauI CCCGC 3 cut(s) 53, 258, 413
Fnu4HI GCNGC 8 cut(s) 13, 25, 109, 112, 115, 254, 596, 670
FokI GGATG 3 cut(s) 158, 770, 1076
Fsp4HI GCNGC 8 cut(s) 13, 25, 109, 112, 115, 254, 596, 670
FspBI CTAG 3 cut(s) 171, 447, 953
GlaI GCGC 4 cut(s) 11, 169, 419, 429
GluI GCNGC 8 cut(s) 13, 25, 109, 112, 115, 254, 596, 670
GsaI CCCAGC 1 cut(s) 791
GsuI CTGGAG 2 cut(s) 117, 511
HaeII RGCGCY 2 cut(s) 13, 171
HaeIII GGCC 8 cut(s) 36, 197, 305, 545, 557, 820, 962, 1052
HgaI GACGC 1 cut(s) 531
HhaI GCGC 4 cut(s) 12, 170, 420, 430
Hin1II CATG 9 cut(s) 178, 275, 311, 357, 476, 544, 556, 562, 577
Hin6I GCGC 4 cut(s) 10, 168, 418, 428
HinP1I GCGC 4 cut(s) 10, 168, 418, 428
HincII GTYRAC 1 cut(s) 916
HindII GTYRAC 1 cut(s) 916
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 6 cut(s) 4, 230, 451, 620, 629, 967
HphI GGTGA 1 cut(s) 1028
Hpy166II GTNNAC 3 cut(s) 189, 916, 1058
Hpy188I TCNGA 7 cut(s) 295, 625, 664, 837, 873, 999, 1103
Hpy188III TCNNGA 2 cut(s) 96, 608
Hpy8I GTNNAC 3 cut(s) 189, 916, 1058
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 5 cut(s) 163, 609, 648, 868, 993
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 2 cut(s) 50, 918
HpyCH4V TGCA 3 cut(s) 24, 669, 827
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 33, 114, 473, 1021, 1094
HpyF3I CTNAG 3 cut(s) 459, 942, 947
HpySE526I ACGT 2 cut(s) 50, 918
Hsp92II CATG 9 cut(s) 178, 275, 311, 357, 476, 544, 556, 562, 577
HspAI GCGC 4 cut(s) 10, 168, 418, 428
KpnI GGTACC 1 cut(s) 751
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 334, 562
LguI GCTCTTC 3 cut(s) 97, 131, 158
LmnI GCTCC 7 cut(s) 20, 83, 155, 261, 367, 530, 1051
Lsp1109I GCAGC 3 cut(s) 36, 582, 681
LweI GCATC 2 cut(s) 379, 913
MaeI CTAG 3 cut(s) 171, 447, 953
MaeII ACGT 2 cut(s) 50, 918
MaeIII GTNAC 3 cut(s) 284, 439, 758
MalI GATC 2 cut(s) 336, 564
MbiI CCGCTC 1 cut(s) 256
MboI GATC 2 cut(s) 334, 562
MboII GAAGA 9 cut(s) 84, 118, 175, 374, 383, 525, 593, 638, 707
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 2 cut(s) 557, 820
MluCI AATT 5 cut(s) 181, 384, 398, 433, 502
MluNI TGGCCA 2 cut(s) 557, 820
MlyI GAGTC 3 cut(s) 224, 445, 976
MmeI TCCRAC 1 cut(s) 273
Mox20I TGGCCA 2 cut(s) 557, 820
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 125
MscI TGGCCA 2 cut(s) 557, 820
MseI TTAA 5 cut(s) 159, 383, 644, 881, 1067
MslI CAYNNNNRTG 2 cut(s) 557, 1041
Msp20I TGGCCA 2 cut(s) 557, 820
MspCI CTTAAG 1 cut(s) 1066
MspR9I CCNGG 5 cut(s) 227, 240, 266, 302, 777
Mva1269I GAATGC 1 cut(s) 671
MvnI CGCG 4 cut(s) 61, 279, 420, 430
MwoI GCNNNNNNNGC 6 cut(s) 21, 33, 114, 473, 1021, 1094
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 5 cut(s) 227, 240, 266, 302, 777
NcoI CCATGG 2 cut(s) 353, 558
NdeII GATC 2 cut(s) 334, 562
NgoMIV GCCGGC 1 cut(s) 104
NheI GCTAGC 1 cut(s) 170
NlaIII CATG 9 cut(s) 178, 275, 311, 357, 476, 544, 556, 562, 577
NlaIV GGNNCC 8 cut(s) 79, 103, 151, 546, 564, 749, 891, 909
NmeAIII GCCGAG 1 cut(s) 988
NspI RCATGY 1 cut(s) 577
PciSI GCTCTTC 3 cut(s) 97, 131, 158
PctI GAATGC 1 cut(s) 671
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 2 cut(s) 620, 629
PfoI TCCNGGA 1 cut(s) 238
PkrI GCNGC 8 cut(s) 14, 26, 110, 113, 116, 255, 597, 671
PleI GAGTC 3 cut(s) 224, 445, 975
PmaCI CACGTG 1 cut(s) 51
PmlI CACGTG 1 cut(s) 51
PpsI GAGTC 3 cut(s) 224, 445, 975
Ppu21I YACGTR 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 830
Psp1406I AACGTT 1 cut(s) 918
Psp5II RGGWCCY 1 cut(s) 830
PspCI CACGTG 1 cut(s) 51
PspEI GGTNACC 1 cut(s) 758
PspFI CCCAGC 1 cut(s) 787
PspN4I GGNNCC 8 cut(s) 79, 103, 151, 546, 564, 749, 891, 909
PspPI GGNCC 3 cut(s) 304, 544, 830
PspPPI RGGWCCY 1 cut(s) 830
PstI CTGCAG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 562
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
RseI CAYNNNNRTG 2 cut(s) 557, 1041
SapI GCTCTTC 3 cut(s) 97, 131, 158
SaqAI TTAA 5 cut(s) 159, 383, 644, 881, 1067
SatI GCNGC 8 cut(s) 13, 25, 109, 112, 115, 254, 596, 670
Sau3AI GATC 2 cut(s) 334, 562
Sau96I GGNCC 3 cut(s) 304, 544, 830
SchI GAGTC 3 cut(s) 224, 445, 976
ScrFI CCNGG 5 cut(s) 227, 240, 266, 302, 777
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 2 cut(s) 379, 913
SfcI CTRYAG 1 cut(s) 22
SinI GGWCC 1 cut(s) 830
SmiMI CAYNNNNRTG 2 cut(s) 557, 1041
SmlI CTYRAG 1 cut(s) 1066
SmoI CTYRAG 1 cut(s) 1066
Sse9I AATT 5 cut(s) 181, 384, 398, 433, 502
SsiI CCGC 9 cut(s) 46, 66, 108, 111, 114, 251, 254, 277, 420
SspMI CTAG 3 cut(s) 171, 447, 953
StyD4I CCNGG 5 cut(s) 225, 238, 264, 300, 775
StyI CCWWGG 4 cut(s) 353, 558, 655, 903
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 2 cut(s) 53, 921
TaqI TCGA 1 cut(s) 373
TasI AATT 5 cut(s) 181, 384, 398, 433, 502
TauI GCSGC 4 cut(s) 111, 114, 117, 256
TfiI GAWTC 2 cut(s) 620, 629
Tru1I TTAA 5 cut(s) 159, 383, 644, 881, 1067
Tru9I TTAA 5 cut(s) 159, 383, 644, 881, 1067
TscAI CASTG 3 cut(s) 26, 1060, 1090
TseI GCWGC 4 cut(s) 12, 24, 595, 669
TspDTI ATGAA 4 cut(s) 145, 260, 630, 772
TspGWI ACGGA 2 cut(s) 158, 864
TspRI CASTG 3 cut(s) 26, 1060, 1090
Vha464I CTTAAG 1 cut(s) 1066
VpaK11BI GGWCC 1 cut(s) 830
XceI RCATGY 1 cut(s) 577
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 3 cut(s) 171, 447, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.